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Rename the TNscope wgs script

DonFreedpushed 1 commit to master • edcb389…ac2b0b8 • 
on Oct 23, 2024

Remove BQSR from the TNscope pipelines

Pull request merge
DonFreedpushed 4 commits to master • 0e925b8…edcb389 • 
on Oct 23, 2024

Remove BQSR from the TNscope pipelines

DonFreedcreated somatic_pipeline_updates • f9e91b0 • 
on Oct 23, 2024

Add --metrics to Somatic_ctDNA_with_UMI.sh

haodongchenpushed 1 commit to master • 1897cda…0e925b8 • 
on Aug 12, 2024

Deprecate the LongRead shell scripts

DonFreedpushed 1 commit to master • cba3143…1897cda • 
on May 2, 2024

Merge pull request #12 from haodongchen/master

Pull request merge
haodongchenpushed 2 commits to master • e24684d…cba3143 • 
on Dec 12, 2023

Merge pull request #11 from haodongchen/master

Pull request merge
haodongchenpushed 2 commits to master • 4cad6a5…e24684d • 
on Dec 12, 2023

Update tnscope_filter.py

haodongchenpushed 1 commit to master • 8d33f29…4cad6a5 • 
on Dec 11, 2023

Add the DNAscope LongRead script for HiFi data

DonFreedpushed 1 commit to master • 90e4b91…8d33f29 • 
on Sep 22, 2023

Update the LongRead README with a section on modification

DonFreedpushed 1 commit to master • 43028de…90e4b91 • 
on Sep 1, 2023

Fix typo in the LongRead script command-line help

DonFreedpushed 1 commit to master • 36bc32f…43028de • 
on Aug 29, 2023

Add the DNAscope LongRead pipeline scripts

DonFreedpushed 1 commit to master • 335bdd8…36bc32f • 
on Aug 29, 2023

Update the DNAscope pipelines to use the new model bundle files

DonFreedpushed 1 commit to master • d42340f…335bdd8 • 
on Aug 25, 2023

Update Somatic_ctDNA_with_UMI.sh

haodongchenpushed 1 commit to master • 5786eeb…d42340f • 
on Aug 10, 2023

Update the example_pipelines README for the new somatic scripts

DonFreedpushed 1 commit to master • 8073895…5786eeb • 
on Aug 1, 2023

Reorganize the germline example scripts

DonFreedpushed 1 commit to master • 0b2f8c5…8073895 • 
on Jul 24, 2023

Add a DNAscope WES pipeline

DonFreedpushed 1 commit to master • 36c2017…0b2f8c5 • 
on Jul 21, 2023

Add the DNAscope pipeline to the README

DonFreedpushed 1 commit to master • d422516…36c2017 • 
on Apr 28, 2023

Add a script for WGS variant calling with DNAscope

DonFreedpushed 1 commit to master • 28d3a05…d422516 • 
on Apr 28, 2023