sars_igv.html

<!DOCTYPE html>
<html lang="en">
<head>
    <meta charset="utf-8">
    <meta http-equiv="X-UA-Compatible" content="IE=edge">
    <meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=1, user-scalable=no">
    <meta name="description" content="">
    <meta name="author" content="">
    <link rel="shortcut icon" href="https://igv.org/web/img/favicon.ico">

    <title>igv.js</title>

    <!-- IGV JS-->
    <script src="dist/igv.min.js"></script>

</head>

<body>


<div id="igv-div" style="padding-top: 10px;padding-bottom: 10px; border:1px solid lightgray"></div>

<script type="text/javascript">

    document.addEventListener("DOMContentLoaded", function () {

        var igvDiv = document.getElementById("igv-div");
        var options =
        {
            reference: {
                id: "sarscov2",
                fastaURL: "https://sysbio.informatics.iupui.edu/primer_project/genomes/sarscov2/sars_cov_2.fasta",
                indexURL: "https://sysbio.informatics.iupui.edu/primer_project/genomes/sarscov2/sars_cov_2.fasta.fai",
                wholeGenomeView: false
            },

        };


        igv.createBrowser(igvDiv, options)
                .then(function (browser) {
                    console.log("Created IGV browser");
                })

    });

</script>

</body>

</html>