diff --git a/Dockerfile b/Dockerfile deleted file mode 100644 index 17b7d1f..0000000 --- a/Dockerfile +++ /dev/null @@ -1,3 +0,0 @@ -FROM swift:latest - -RUN apt-get update && apt-get install -y python3 python3-pip python3-venv python3-mysqldb libmysqlclient-dev \ No newline at end of file diff --git a/Makefile b/Makefile deleted file mode 100644 index 01643fc..0000000 --- a/Makefile +++ /dev/null @@ -1,10 +0,0 @@ -.PHONY: venv build run - -venv: - docker compose exec app bash -c 'python3 -m venv venv && . venv/bin/activate && python3 -m pip install -r requirements.txt' - -build: - docker compose exec app bash -c 'swift build' - -run: - docker compose exec app bash -c '. venv/bin/activate && swift run simulator-swift $(ARGS)' \ No newline at end of file diff --git a/Package.resolved b/Package.resolved deleted file mode 100644 index e0a0552..0000000 --- a/Package.resolved +++ /dev/null @@ -1,59 +0,0 @@ -{ - "pins" : [ - { - "identity" : "cryptoswift", - "kind" : "remoteSourceControl", - "location" : "https://github.com/krzyzanowskim/CryptoSwift.git", - "state" : { - "revision" : "7892a123f7e8d0fe62f9f03728b17bbd4f94df5c", - "version" : "1.8.1" - } - }, - { - "identity" : "pythonkit", - "kind" : "remoteSourceControl", - "location" : "https://github.com/pvieito/PythonKit.git", - "state" : { - "branch" : "master", - "revision" : "41dd1e76bb31661f59efbc1784e8f60ccc32a9d5" - } - }, - { - "identity" : "rainbow", - "kind" : "remoteSourceControl", - "location" : "https://github.com/onevcat/Rainbow", - "state" : { - "revision" : "e0dada9cd44e3fa7ec3b867e49a8ddbf543e3df3", - "version" : "4.0.1" - } - }, - { - "identity" : "swift-algorithms", - "kind" : "remoteSourceControl", - "location" : "https://github.com/apple/swift-algorithms", - "state" : { - "revision" : "f6919dfc309e7f1b56224378b11e28bab5bccc42", - "version" : "1.2.0" - } - }, - { - "identity" : "swift-argument-parser", - "kind" : "remoteSourceControl", - "location" : "https://github.com/apple/swift-argument-parser", - "state" : { - "revision" : "c8ed701b513cf5177118a175d85fbbbcd707ab41", - "version" : "1.3.0" - } - }, - { - "identity" : "swift-numerics", - "kind" : "remoteSourceControl", - "location" : "https://github.com/apple/swift-numerics.git", - "state" : { - "revision" : "0a5bc04095a675662cf24757cc0640aa2204253b", - "version" : "1.0.2" - } - } - ], - "version" : 2 -} diff --git a/Package.swift b/Package.swift deleted file mode 100644 index eedde2e..0000000 --- a/Package.swift +++ /dev/null @@ -1,32 +0,0 @@ -// swift-tools-version: 5.9 -// The swift-tools-version declares the minimum version of Swift required to build this package. - -import PackageDescription - -let package = Package( - name: "simulator-swift", - platforms: [ - .macOS(.v13) - ], - dependencies: [ - .package(url: "https://github.com/krzyzanowskim/CryptoSwift.git", .upToNextMajor(from: "1.8.1")), - .package(url: "https://github.com/pvieito/PythonKit.git", branch: "master"), - .package(url: "https://github.com/apple/swift-algorithms", from: "1.2.0"), - .package(url: "https://github.com/onevcat/Rainbow", .upToNextMajor(from: "4.0.0")), - .package(url: "https://github.com/apple/swift-argument-parser", from: "1.3.0") - ], - targets: [ - // Targets are the basic building blocks of a package, defining a module or a test suite. - // Targets can depend on other targets in this package and products from dependencies. - .executableTarget( - name: "simulator-swift", - dependencies: [ - .product(name: "PythonKit", package: "PythonKit"), - .product(name: "Algorithms", package: "swift-algorithms"), - .product(name: "CryptoSwift", package: "CryptoSwift"), - .product(name: "ArgumentParser", package: "swift-argument-parser"), - .product(name: "Rainbow", package: "Rainbow") - ] - ) - ] -) diff --git a/bib_on_BigDataAccessControl.bib b/bib_on_BigDataAccessControl.bib index b69c049..b35a425 100644 --- a/bib_on_BigDataAccessControl.bib +++ b/bib_on_BigDataAccessControl.bib @@ -86,7 +86,9 @@ @inproceedings{aissa2020decide month = {November}, booktitle = {Proc. of EMCIS}, address = {Dubai, EAU}, - volume = 402 + volume = 402, + pages = {63--78}, + organization = {Springer} } @inproceedings{5v, title = {Addressing big data issues in Scientific Data Infrastructure}, @@ -462,7 +464,8 @@ @inproceedings{IBE:2006 year = 2006, month = {August}, booktitle = {Proc. of CRYPTO}, - address = {Santa Barbara, USA} + address = {Santa Barbara, USA}, + pages = {290--307} } @inproceedings{ABE1:2004, title = {Fuzzy Identity-Based Encryption}, @@ -470,7 +473,9 @@ @inproceedings{ABE1:2004 year = 2005, month = {May}, booktitle = {Proc. of EUROCRYPT}, - address = {Aarhus, Denmark} + address = {Aarhus, Denmark}, + pages = {457--473}, + abstract = {We introduce a new type of Identity-Based Encryption (IBE) scheme that we call Fuzzy Identity-Based Encryption. In Fuzzy IBE we view an identity as set of descriptive attributes. A Fuzzy IBE scheme allows for a private key for an identity, $\omega$, to decrypt a ciphertext encrypted with an identity, $\omega$ {\textasciiacutex}, if and only if the identities $\omega$ and $\omega$ {\textasciiacutex} are close to each other as measured by the ``set overlap'' distance metric. A Fuzzy IBE scheme can be applied to enable encryption using biometric inputs as identities; the error-tolerance property of a Fuzzy IBE scheme is precisely what allows for the use of biometric identities, which inherently will have some noise each time they are sampled. Additionally, we show that Fuzzy-IBE can be used for a type of application that we term ``attribute-based encryption''.} } @inproceedings{ABE2:2006, title = {Attribute-Based Encryption for Fine-Grained Access Control of Encrypted Data}, @@ -478,7 +483,11 @@ @inproceedings{ABE2:2006 year = 2006, month = 11, booktitle = {Proc. of ACM CCS}, - address = {Alexandria, USA} + publisher = {ACM}, + address = {Alexandria, USA}, + pages = {89--98}, + numpages = 10, + keywords = {hierarchical identity-based encryption, broadcast encryption, attribute-based encryption, delegation, audit logs, access control} } @article{HOMOMEnc:2015, title = {A Guide to Fully Homomorphic Encryption}, @@ -494,9 +503,13 @@ @article{k-anon year = 2001, journal = {IEEE transactions on Knowledge and Data Engineering}, publisher = {IEEE}, + address = {USA}, volume = 13, number = 6, - pages = {1010--1027} + pages = {1010--1027}, + issue_date = {October 2002}, + abstract = {Consider a data holder, such as a hospital or a bank, that has a privately held collection of person-specific, field structured data. Suppose the data holder wants to share a version of the data with researchers. How can a data holder release a version of its private data with scientific guarantees that the individuals who are the subjects of the data cannot be re-identified while the data remain practically useful? The solution provided in this paper includes a formal protection model named k-anonymity and a set of accompanying policies for deployment. A release provides k-anonymity protection if the information for each person contained in the release cannot be distinguished from at least k-1 individuals whose information also appears in the release. This paper also examines re-identification attacks that can be realized on releases that adhere to k- anonymity unless accompanying policies are respected. The k-anonymity protection model is important because it forms the basis on which the real-world systems known as Datafly, µ-Argus and k-Similar provide guarantees of privacy protection.}, + keywords = {re-identification, data anonymity, data fusion, data privacy, privacy} } @article{s.tkde01, title = {Protecting Respondents' Identities in Microdata Release}, @@ -514,7 +527,9 @@ @incollection{DEMCHENKO201721 booktitle = {Big Data Analytics for Sensor-Network Collected Intelligence}, publisher = {Academic Press}, series = {Intelligent Data-Centric Systems}, - pages = {21--62} + pages = {21--62}, + keywords = {Big Data, Big Data Architecture Framework (BDAF), Big data infrastructure, NIST Big Data Architecture (BDRA), Cloud computing, Intercloud Architecture Framework (ICAF), Cloud powered design, SlipStream cloud automation platform}, + abstract = {This chapter describes the general architecture and functional components of the cloud-based big data infrastructure (BDI). The chapter starts with the analysis of emerging Big Data and data intensive technologies and provides the general definition of the Big Data Architecture Framework (BDAF) that includes the following components: Big Data definition, Data Management including data lifecycle and data structures, generically cloud based BDI, Data Analytics technologies and platforms, and Big Data security, compliance, and privacy. The chapter refers to NIST Big Data Reference Architecture (BDRA) and summarizes general requirements to Big Data systems described in NIST documents. The proposed BDI and its cloud-based components are defined in accordance with the NIST BDRA and BDAF. This chapter provides detailed analysis of the two bioinformatics use cases as typical example of the Big Data applications that have being developed by the authors in the framework of the CYCLONE project. The effective use of cloud for bioinformatics applications requires maximum automation of the applications deployment and management that may include resources from multiple clouds and providers. The proposed CYCLONE platform for multicloud multiprovider applications deployment and management is based on the SlipStream cloud automation platform and includes all necessary components to build and operate complex scientific applications. The chapter discusses existing platforms for cloud powered applications development and deployment automation, in particularly referring to the SlipStream cloud automation platform, which allows multicloud applications deployment and management. The chapter also includes a short overview of the existing Big Data platforms and services provided by the major cloud services providers which can be used for fast deployment of customer Big Data applications using the benefits of cloud technologies and global cloud infrastructure.} } @article{laney20013d, title = {3D data management: Controlling data volume, velocity and variety}, @@ -532,12 +547,17 @@ @book{SHINDER2013187 year = 2013, booktitle = {Windows Server 2012 Security from End to Edge and Beyond}, publisher = {Syngress}, - pages = {187--210} + address = {Boston}, + pages = {187--210}, + keywords = {Dynamic Access Control, Picture Password}, + abstract = {Access control requires both authentication and authorization. Windows Server 2012 includes a number of new features and technologies that enhance your ability to control access to information contained on your network file servers. The major advance in this area is Dynamic Access Control, which makes it possible for you to use claims-based authorization for accessing information on your file servers. This means that you are no longer limited to conventional user/group-based access control. Windows 8 and Windows Server 2012 also introduced a new method for logging onto computers called Picture Password. With Picture Password, the user can select a picture and then perform a number of gestures on the picture. The picture and the gestures are packaged with the user's user name and password. The user can then log on by being presented with the picture and repeating the gestures, which will open the package and expose the user name and password to the system. In this chapter, we will look at how these technologies work and how to implement them.} } @article{Byun2008, title = {Purpose based access control for privacy protection in relational database systems}, author = {Byun, Ji-Won and Li, Ninghui}, year = 2008, + month = {Jul}, + day = {01}, journal = {The VLDB Journal}, volume = 17, number = 4, @@ -664,19 +684,18 @@ @article{Colombo:JournCybersec:2019 %%%%%%%FROM MEDES%%%%%%% %%%%% FROM MEDES 2 %%%%%%%%% %%%%%%% FROM MEDES2 1 %%%%%%% - @article{RAHMAN20102707, -title = {Jaccard Index based availability prediction in enterprise grids}, -journal = {Procedia Computer Science}, -volume = {1}, -number = {1}, -pages = {2707-2716}, -year = {2010}, -note = {ICCS 2010}, -issn = {1877-0509}, -doi = {https://doi.org/10.1016/j.procs.2010.04.304}, -url = {https://www.sciencedirect.com/science/article/pii/S1877050910003054}, -author = {Mustafizur Rahman and Md. Rafiul Hassan and Rajkumar Buyya}, -keywords = {Availability, Data mining, Forecasting, Enterprise grid, Jaccard Index}, -abstract = {Enterprise Grid enables sharing and aggregation of a set of computing or storage resources connected by enterprise network, but the availability of the resources in this environment varies widely. Thus accurate prediction of the availability of these resources can significantly improve the performance of executing compute-intensive complex scientific and business applications in enterprise Grid environment by avoiding possible runtime failures. In this paper, we propose a Jaccard Index based prediction approach utilizing lazy learning algorithm that searches for a best match of a sequence pattern in the historical data in order to predict the availability of a particular machine in the system. We compare it against three other well known availability prediction techniques using simulation based study. The experimental results show that our Jaccard Index based prediction approach achieves better prediction accuracy with reduced computational complexity when compared to other similar techniques.} + title = {Jaccard Index based availability prediction in enterprise grids}, + author = {Mustafizur Rahman and Md. Rafiul Hassan and Rajkumar Buyya}, + year = 2010, + journal = {Procedia Computer Science}, + volume = 1, + number = 1, + pages = {2707--2716}, + doi = {https://doi.org/10.1016/j.procs.2010.04.304}, + issn = {1877-0509}, + url = {https://www.sciencedirect.com/science/article/pii/S1877050910003054}, + note = {ICCS 2010}, + keywords = {Availability, Data mining, Forecasting, Enterprise grid, Jaccard Index}, + abstract = {Enterprise Grid enables sharing and aggregation of a set of computing or storage resources connected by enterprise network, but the availability of the resources in this environment varies widely. Thus accurate prediction of the availability of these resources can significantly improve the performance of executing compute-intensive complex scientific and business applications in enterprise Grid environment by avoiding possible runtime failures. In this paper, we propose a Jaccard Index based prediction approach utilizing lazy learning algorithm that searches for a best match of a sequence pattern in the historical data in order to predict the availability of a particular machine in the system. We compare it against three other well known availability prediction techniques using simulation based study. The experimental results show that our Jaccard Index based prediction approach achieves better prediction accuracy with reduced computational complexity when compared to other similar techniques.} } diff --git a/docker-compose.yml b/docker-compose.yml deleted file mode 100644 index 96a46e9..0000000 --- a/docker-compose.yml +++ /dev/null @@ -1,19 +0,0 @@ -version: '3' -services: - app: - build: - context: . - dockerfile: Dockerfile - working_dir: /app - volumes: - - .:/app - tty: true - mysql: - image: mysql:5.7 - environment: - MYSQL_ROOT_PASSWORD: r00t - MYSQL_DATABASE: pippo - ports: - - "3309:3306" - volumes: - - ./mysql:/var/lib/mysql diff --git a/dump.sql b/dump.sql deleted file mode 100644 index 559e53d..0000000 --- a/dump.sql +++ /dev/null @@ -1,55 +0,0 @@ --- MySQL dump 10.13 Distrib 8.0.36, for Linux (x86_64) --- --- Host: 127.0.0.1 Database: pippo --- ------------------------------------------------------ --- Server version 5.7.44 - -/*!40101 SET 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-/*!40000 ALTER TABLE `mytable_gamma` ENABLE KEYS */; -UNLOCK TABLES; -/*!40103 SET TIME_ZONE=@OLD_TIME_ZONE */; - -/*!40101 SET SQL_MODE=@OLD_SQL_MODE */; -/*!40014 SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS */; -/*!40014 SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS */; -/*!40101 SET CHARACTER_SET_CLIENT=@OLD_CHARACTER_SET_CLIENT */; -/*!40101 SET CHARACTER_SET_RESULTS=@OLD_CHARACTER_SET_RESULTS */; -/*!40101 SET COLLATION_CONNECTION=@OLD_COLLATION_CONNECTION */; -/*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */; - --- Dump completed on 2024-02-27 18:42:10 diff --git a/experiment copy.tex b/experiment copy.tex deleted file mode 100644 index d34b410..0000000 --- a/experiment copy.tex +++ /dev/null @@ -1,40 +0,0 @@ -\section{Experiments}\label{sec:experiment} -In this section, we will discuss the experiments conducted to evaluate the effectiveness, particularly of the proposed metrics and framework as a whole. -The experiments were carried out using a reference dataset and various manipulations were performed on it with the specific objective of evaluating the efficacy of the proposed solution. - -The reference dataset served as a baseline for comparison and provided a known starting point for the evaluation. -By applying specific manipulations to the dataset, different scenarios and variations were created to thoroughly test the proposed solution's performance under diverse conditions. -The evaluation process proceeded as follows: - - - -\textbf{Generation of synthetic datasets from a public dataset:} Synthetic datasets were generated with the aim of testing the performance of the metrics. These datasets were preceded by perturbations designed to alter both the number of items using a purely quantitative approach and the statistical distribution of the dataset. The alterations involved multiple columns to assess the behavior of the weighted metrics. - -\textbf{Identification of parameters:} To apply the modifications mentioned above, it was necessary to identify the parameters to be altered. Figure \ref{fig:distributions} shows plots of the statistical distributions and features involved in the identification process. - -\textbf{Implementation of software environment and tools:} The following components were implemented: a software environment aimed at emulating the behaviors of the services, the heuristics, and a tool to emulate the behavior of the framework as a whole. This tool enabled the selection of services from a predetermined set, with the goal of minimizing the metrics by applying the proposed heuristics. - -\textbf{Comparison with manually computed optimum:} Finally, the results of the end-to-end test were compared with the manually computed optimum. Table \ref{tab:results} presents the compared and ranked results obtained from this comparison. - - -By following this experimental procedure, the effectiveness of the proposed metrics and framework was thoroughly evaluated, providing valuable insights into their performance and capabilities. - -\begin{figure}[ht] - \centering - \includegraphics[width=\columnwidth]{example-image-a} - \caption{Plots of the statistical distributions and features involved in the identification of parameters.} - \label{fig:distributions} -\end{figure} - -\begin{table}[ht] - \centering - \caption{Comparison and ranking of the results obtained from the end-to-end test and the manually computed optimum.} - \label{tab:results} - \begin{tabular}{c|c} - \textbf{Rank} & \textbf{Result Comparison} \\ - - $\vdots$ & $\vdots$ \\ - \end{tabular} -\end{table} - -This experimental approach provides a assessment of the proposed metrics and framework, offering insights into their performance and capabilities. \ No newline at end of file diff --git a/functions.py b/functions.py deleted file mode 100644 index ff158aa..0000000 --- a/functions.py +++ /dev/null @@ -1,24 +0,0 @@ -from scipy.spatial import distance - -from pandas import DataFrame -from sqlalchemy import create_engine, types -my_conn = create_engine("mysql+mysqldb://root:r00t@mysql:3306/pippo") # fill details -my_conn = my_conn.connect() -def mydistance(df1, df2): - ds = [] - - for col in df1.columns: - try: - p = df1[col].value_counts(normalize=True).sort_index() - q = df2[col].value_counts(normalize=True).reindex(p.index, fill_value=0.0).sort_index() - ds.append(distance.jensenshannon(p, q)) - except Exception as e: - print(e) - ds.append(1.0) - - return sum(ds) / len(ds) - - -def store(item): - - DataFrame(item, index=[0]).to_sql('gamma_10nodes', my_conn, if_exists='append', index=False) diff --git a/introduction copia.tex b/introduction copia.tex deleted file mode 100644 index 8de1a9e..0000000 --- a/introduction copia.tex +++ /dev/null @@ -1,23 +0,0 @@ -\section{Introduction} -The usage of multitenancy coupled with cloud infrastructure represents a paradigm shift in the big data scenario, redefining scalability and efficiency in data analytics. Multitenancy enables multiple users to share resources, such as computing power and storage, optimizing resource utilization and reducing operational costs. Leveraging cloud infrastructure further enhances flexibility and scalability. -%allowing organizations to dynamically allocate resources based on demand while ensuring seamless access to cutting-edge data analytics tools and services. -% -The flip side of multitenancy is the increased complexity of data governace: the shared model introduces unique security challenges, as tenants may have different security requirements, levels of access, and data sensitivity. Adequate measures such as encryption, access control mechanisms, and data anonymization techniques must be implemented to safeguard data against unauthorized access and ensure compliance with regulatory requirements such as GDPR or HIPAA. -% -As a consequence, achieving a balance between data protection and data quality is crucial, as the removal or alteration of personally identifiable information from datasets to safeguard individuals' privacy can compromise the accuracy of analytics results. - -So far, all research endeavors have been concentrated on exploring these two issues separately: on one hand, the concept of data quality, encompassing accuracy, reliability, and suitability, has been investigated to understand the implications in analytical contexts. Although extensively studied, these investigations often prioritize enhancing the quality of source data rather than ensuring data quality throughout the entire processing pipeline, or the integrity of outcomes derived from data. On the other hand, there is a focus on data privacy and security, entailing the protection of confidential information and adherence to rigorous privacy regulations. -There are very few solutions that that find a good balance between them since it requires a holistic approach that integrates technological solutions, organizational policies, and ongoing monitoring and adaptation to emerging threats and regulatory changes. - -To this aim, we propose a data governance framework tailored to contemporary data-driven pipelines, which aims to limit the privacy and security risks. The primary objective of this framework is to facilitate the assembly of data processing services, with a central focus on the selection of those services that optimize data quality, while upholding privacy and security requirements. - -The key contributions of this study are as follows: -\begin{enumerate} - \item each service in the pipeline is tagged with \textit{annotations} to specify data protection requirements expressing transformation on data to enforce data protection, as well as functional specifications on services expressing data manipulations carried out during services execution; - \item the annotated pipeline, called \textit{pipeline template}, now acts as a skeleton, specifying the structure of the pipeline and both the functional and non-functional requirements; - \item the \textit{pipeline instance} is built by instantiating the template with services according to the specified requirements. Our service selection approach focuses on maximizing data quality by retaining the maximum amount of information when applying data protection transformations; - \item The composite selection problem is NP-hard, but we present a parametric heuristic tailored to address the computational - complexity. We evaluated the performance and quality of the algorithm by running some experiments on a dataset. -\end{enumerate} - -The rest of the paper is organized as follows. %In Section \ref{sec:requirements} In Section \ref{} In Section \ref{} diff --git a/main.tex b/main.tex index 768323f..1186aa0 100644 --- a/main.tex +++ b/main.tex @@ -22,7 +22,6 @@ \usepackage{xcolor} \usepackage{url} \usepackage{amsthm} -% \usepackage{pgfplots} \usepackage{float} \usepackage{amsmath} \usepackage[capitalise]{cleveref} @@ -37,7 +36,6 @@ \theoremstyle{definition} \newtheorem{theorem}{Theorem}[section] -%\newtheorem{problem}{Problem}[section] \newtheorem{definition}{Definition} \newtheorem{example}{Example}[section] @@ -58,7 +56,6 @@ \maketitle - \abstract{ The conflict between the need of protecting and sharing data is hampering the spread of big data applications. Proper security and privacy assurance is required to protect data owners, while proper data access and sharing are fundamental to implement smart big data solutions. @@ -72,19 +69,6 @@ Our approach seeks to harmonize these objectives by establishing a data governance framework that balances privacy and data quality. } - - -% \begin{IEEEkeywords} -% Access Control, Big Data, Data Transformation, Data Ingestion -% \end{IEEEkeywords}} - -% \maketitle - -% \IEEEdisplaynotcompsoctitleabstractindextext - -% \IEEEpeerreviewmaketitle - - \tikzset{ do path picture/.style={% path picture={% @@ -104,7 +88,6 @@ } \input{introduction} -%\input{motivations} \input{system_model} \input{pipeline_template.tex} \input{pipeline_template_example.tex} diff --git a/meth.pdf b/meth.pdf deleted file mode 100644 index 20794ef..0000000 Binary files a/meth.pdf and /dev/null differ diff --git a/simulator-swift/Sources/Distance.swift b/simulator-swift/Sources/Distance.swift index a5dcab9..6646f6d 100644 --- a/simulator-swift/Sources/Distance.swift +++ b/simulator-swift/Sources/Distance.swift @@ -8,7 +8,7 @@ func jensenshannon(df1: PythonObject, df2: PythonObject) -> Double { func hash(_ x: [UInt8]) -> Double { let a = Double(x.crc32() & 0xffff_ffff) / pow(2, 32) - let b = a.normalize(min: 0, max: 1, from: 0.7, to: 1) + let b = a.normalize(min: 0, max: 1, from: Double(lib.lowerBound)!, to: Double(lib.upperBound)! ) return b } diff --git a/simulator-swift/Sources/Service.swift b/simulator-swift/Sources/Service.swift index 0f6e183..f3f59da 100644 --- a/simulator-swift/Sources/Service.swift +++ b/simulator-swift/Sources/Service.swift @@ -24,12 +24,11 @@ struct Service: CustomStringConvertible, Equatable { } func run(_ input: PythonObject, weight: Double) -> PythonObject { - np.random.seed(EXPERIMENT_SEED) + return input.sample( frac: weight, - random_state: EXPERIMENT_SEED, - weights: np.random.gamma(shape: weight * 100, scale: 1.0, size: input.count) - ) + random_state: EXPERIMENT_SEED + ) } static func == (lhs: Service, rhs: Service) -> Bool { diff --git a/simulator-swift/Sources/Simulation.swift b/simulator-swift/Sources/Simulation.swift index 995a54c..41e62c6 100644 --- a/simulator-swift/Sources/Simulation.swift +++ b/simulator-swift/Sources/Simulation.swift @@ -23,8 +23,7 @@ struct Simulation { output = service.run(output, weight: hash(weights)) } - let metric = jensenshannon(df1: original, df2: output) - print(choosed, services, "p:", hash(weights), "m:", metric) + var percentage: Double = 1.0 var allWeights: [UInt8] = [] @@ -32,7 +31,9 @@ struct Simulation { allWeights += s.weight percentage = percentage * hash(allWeights) } - + let metric = jensenshannon(df1: original, df2: output) + // let metric = percentage + print(choosed, services, "p:", hash(weights), "m:", metric) return .init( services: services, metric: metric, diff --git a/simulator-swift/Sources/main.swift b/simulator-swift/Sources/main.swift index ad7c493..bc05922 100644 --- a/simulator-swift/Sources/main.swift +++ b/simulator-swift/Sources/main.swift @@ -14,6 +14,7 @@ let np = Python.import("numpy") let dataframe = pd.read_csv("Input/inmates_enriched_10k.csv") let lib = Python.import("functions") + var EXPERIMENT_SEED: Int = 0 // Read Experiment number, number of nodes and number of services from command line struct MyCLI: ParsableCommand { @@ -26,10 +27,20 @@ struct MyCLI: ParsableCommand { @Argument(help: "Number of services") var numberOfServices: Int + @Argument(help: "lower bound") + var lowerBound: Float + + @Argument(help: " upper bound") + var upperBound: Float + func run() throws { let experimentRange = experimentNumber let nodesRange = 3...numberOfNodes let servicesRange = 2...numberOfServices + lib.lowerBound = PythonObject( lowerBound ) + lib.upperBound = PythonObject( upperBound ) + lib.number_of_nodes = PythonObject( numberOfNodes ) + lib.number_of_services = PythonObject( numberOfServices ) EXPERIMENT_SEED = experimentRange diff --git a/simulator-swift/functions.py b/simulator-swift/functions.py index 29aa6a6..96021bb 100644 --- a/simulator-swift/functions.py +++ b/simulator-swift/functions.py @@ -5,8 +5,17 @@ from sqlalchemy import create_engine, types my_conn = create_engine("mysql+mysqldb://root:r00t@mysql:3306/pippo") # fill details my_conn = my_conn.connect() +lowerBound = 0.0 +upperBound = 0.0 +number_of_nodes = 0 +number_of_services = 0 + + + + def mydistance(df1, df2): ds = [] + ws = [] for col in df1.columns: try: @@ -14,15 +23,24 @@ def mydistance(df1, df2): q = df2[col].value_counts(normalize=True).reindex(p.index, fill_value=0.0).sort_index() if np.sum(np.asarray(q), axis=0, keepdims=True) != 0: ds.append(distance.jensenshannon(p, q)) + ws.append(len(df1[col].unique()) / len(df1[col])) else: ds.append(1.0) except Exception as e: print(e) ds.append(1.0) - - return sum(ds) / len(ds) + ws = [w/sum(ws) for w in ws] + try: + return np.average(ds,weights=ws) + except: + return 1.0 +def quantitative(df1, df2): + return len(df2)/len(df1) def store(item): - - DataFrame(item, index=[0]).to_sql('n7_s7_70_100', my_conn, if_exists='append', index=False) + my_conn = create_engine("mysql+mysqldb://root:r00t@mysql:3306/pippo") # fill details + my_conn2 = my_conn.connect() + DataFrame(item, index=[0]).to_sql(f'qualitative_n{number_of_nodes}_s{number_of_services}_{int(lowerBound*100)}_{int(upperBound*100)}', my_conn, if_exists='append', index=False) + my_conn2.close() + my_conn.dispose() \ No newline at end of file diff --git a/sn-bibliography.bib b/sn-bibliography.bib new file mode 100644 index 0000000..0224b17 --- /dev/null +++ b/sn-bibliography.bib @@ -0,0 +1,163 @@ +%% Journal article +@article{bib1, + author = "Campbell, S. L. and Gear, C. W.", + title = "The index of general nonlinear {D}{A}{E}{S}", + journal = "Numer. {M}ath.", + volume = "72", + number = "2", + pages = "173--196", + year = "1995" +} + +%% Journal article with DOI +@article{bib2, + author = "Slifka, M. K. and Whitton, J. L.", + title = "Clinical implications of dysregulated cytokine production", + journal = "J. {M}ol. {M}ed.", + volume = "78", + pages = "74--80", + year = "2000", + doi = "10.1007/s001090000086" +} + +%% Journal article +@article{bib3, + author = "Hamburger, C.", + title = "Quasimonotonicity, regularity and duality for nonlinear systems of + partial differential equations", + journal = "Ann. Mat. Pura. Appl.", + volume = "169", + number = "2", + pages = "321--354", + year = "1995" +} + +%% book, authored +@book{bib4, + author = "Geddes, K. O. and Czapor, S. R. and Labahn, G.", + title = "Algorithms for {C}omputer {A}lgebra", + address = "Boston", + publisher = "Kluwer", + year = "1992" +} + +%% Item 8. Book, chapter +@incollection{bib5, + author = "Broy, M.", + title = "Software engineering---from auxiliary to key technologies", + editor = "Broy, M. and Denert, E.", + booktitle = "Software Pioneers", + pages = "10--13", + address = "New {Y}ork", + publisher = "Springer", + year = "1992" +} + +%% Book, edited +@book{bib6, + editor = "Seymour, R. S.", + title = "Conductive {P}olymers", + address = "New {Y}ork", + publisher = "Plenum", + year = "1981" +} + +%% Chapter in a book in a series with volume titles +@inproceedings{bib7, + author = "Smith, S. E.", + title = "Neuromuscular blocking drugs in man", + editor = "Zaimis, E.", + volume = "42", + booktitle = "Neuromuscular junction. {H}andbook of experimental pharmacology", + pages = "593--660", + address = "Heidelberg", + publisher = "Springer", + year = "1976" +} + +%% Paper presented at a conference +@misc{bib8, + author = "Chung, S. T. and Morris, R. L.", + title = "Isolation and characterization of plasmid deoxyribonucleic acid from + Streptomyces fradiae", + year = "1978", + note = "Paper presented at the 3rd international symposium on the genetics + of industrial microorganisms, University of {W}isconsin, {M}adison, + 4--9 June 1978" +} + +%% Data citation example +@misc{bib9, + author = "Hao, Z. and AghaKouchak, A. and Nakhjiri, N. and Farahmand, A.", + title = "Global integrated drought monitoring and prediction system (GIDMaPS) data sets", + year = "2014", + note = "figshare \url{https://doi.org/10.6084/m9.figshare.853801}" +} + +%% Preprint citation example +@misc{bib10, + author = "Babichev, S. A. and Ries, J. and Lvovsky, A. I.", + title = "Quantum scissors: teleportation of single-mode optical states by means + of a nonlocal single photon", + year = "2002", + note = "Preprint at \url{https://arxiv.org/abs/quant-ph/0208066v1}" +} + +@article{bib11, + author = "Beneke, M. and Buchalla, G. and Dunietz, I.", + title = "Mixing induced {CP} asymmetries in inclusive {B} decays", + journal = "Phys. {L}ett.", + volume = "B393", + year = "1997", + pages = "132-142", + archivePrefix = "arXiv", + eprint = "0707.3168", + primaryClass = "gr-gc" +} + +@softmisc{bib12, + author = "Stahl, B.", + title = "deep{SIP}: deep learning of {S}upernova {I}a {P}arameters", + version = "0.42", + keywords = "Software", + howpublished = "Astrophysics {S}ource {C}ode {L}ibrary", + year = "2020", + month = "Jun", + eid = "ascl:2006.023", + pages = "ascl:2006.023", + archivePrefix = "ascl", + eprint = "2006.023", + adsurl = "{https://ui.adsabs.harvard.edu/abs/2020ascl.soft06023S}", + adsnote = "Provided by the SAO/NASA Astrophysics Data System" +} + +@article{bib13, + author = "Abbott, T. M. C. and others", + collaboration = "DES", + title = "{Dark Energy Survey Year 1 Results: Constraints on Extended Cosmological Models from Galaxy Clustering and Weak Lensing}", + eprint = "1810.02499", + archivePrefix = "arXiv", + primaryClass = "astro-ph.CO", + reportNumber = "FERMILAB-PUB-18-507-PPD", + doi = "10.1103/PhysRevD.99.123505", + journal = "Phys. Rev. D", + volume = "99", + number = "12", + pages = "123505", + year = "2019" +} + +%%============================================================================%% +%% while using chicago reference style, both abbreviated and expanded form of %% +%% author name format is acceptable. Refer below example for expanded form %% +%%============================================================================%% + +%% author = "{Cameron, Deborah}", - single author +%% author = "{Saito, Yukio} and {Hyuga, Hiroyuki}", - double author + +%%======================================%% +%% Example for author names with suffix %% +%%======================================%% + +%% author = "{Price, R. A. Jr} and {Curry, N. {III}} and McCann, K. E. and +%% Fielding, J. L. and {Abercrombie, E. 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Appendix Theorem Lemma} % %%%%%%%%%%%%%%%%%%%%%%%%%%% Math Settings %%%%%%%%%%%%%%%%%%%%%%%%%%% % %%%%%%%%%%%%%%%%%%%%%%%%%%%% For above/below spacing \def\eqnarray{% \stepcounter{equation}% \def\@currentlabel{\p@equation\theequation}% \global\@eqnswtrue \m@th \global\@eqcnt\z@ \tabskip\@centering \let\\\@eqncr $$\everycr{}\halign to\displaywidth\bgroup \hskip\@centering$\displaystyle\tabskip\z@skip{##}$\@eqnsel &\global\@eqcnt\@ne\hskip \tw@\arraycolsep \hfil${##}$\hfil &\global\@eqcnt\tw@ \hskip \tw@\arraycolsep $\displaystyle{##}$\hfil\tabskip\@centering &\global\@eqcnt\thr@@ \hb@xt@\z@\bgroup\hss##\egroup \tabskip\z@skip \cr } \def\endeqnarray{% \@@eqncr \egroup \global\advance\c@equation\m@ne $$\@ignoretrue } % %%%%%%%%%%%%%%%%%%%%%%%%%%% Titles %%%%%%%%%%%%%%%%%%%%%%%%%%% % \renewcommand\refname{References}% \renewcommand\figurename{Fig.}% defined as per springer style \renewcommand\tablename{Table}% \renewcommand\appendixname{Appendix}% \renewcommand\abstractname{Abstract}% % %%%%%%%%%%%%%%%%%%%%%%%%%%% Article Front Matter %%%%%%%%%%%%%%%%%%%%%%%%%%% % \def\raggedleft{\leftskip0pt plus 1fil\parfillskip=0pt\relax}% \def\raggedright{\rightskip0pt plus 1fil\parfillskip=0pt\relax}% \def\raggedcenter{\leftskip=0pt plus 0.5fil\rightskip=0pt plus 0.5fil% \parfillskip=0pt\let\hb=\break}% \def\titraggedcenter{\leftskip=12pt plus 0.5fil\rightskip=12pt plus 0.5fil% \parfillskip=0pt\let\hb=\break}% \def\absraggedcenter{\leftskip=24pt plus 0.5fil\rightskip=24pt plus 0.5fil% \parfillskip=0pt\let\hb=\break}% % %%% Font Def \def\Artcatfont{\reset@font\fontsize{8bp}{10bp}\selectfont}% \def\Titlefont{\reset@font\fontsize{17bp}{22.5bp}\selectfont\titraggedcenter}% \def\SubTitlefont{\reset@font\fontsize{14bp}{16.5bp}\selectfont\titraggedcenter}% \def\Authorfont{\reset@font\fontsize{12bp}{14.5bp}\selectfont\boldmath\titraggedcenter}% \def\addressfont{\reset@font\fontsize{11bp}{13.5bp}\selectfont\titraggedcenter}% \def\abstractheadfont{\reset@font\fontsize{9bp}{11bp}\bfseries\selectfont\titraggedcenter}% \def\abstractsubheadfont{\reset@font\fontsize{9bp}{11bp}\bfseries\selectfont}% \def\abstractfont{\reset@font\fontsize{9bp}{11bp}\selectfont\leftskip=24pt\rightskip=24pt\parfillskip=0pt plus 1fil}% \def\keywordfont{\reset@font\fontsize{8bp}{9.5bp}\selectfont\leftskip=24pt\rightskip=24pt plus0.5fill}% \def\historyfont{\reset@font\fontsize{8bp}{9.5bp}\selectfont\leftskip=24pt\rightskip=24pt plus0.5fill}% %% Article Type \newbox\artcatbox% \def\articletype#1{\if!#1!\else\setbox\artcatbox\hbox{\Artcatfont\hskip1mm#1\hskip1mm}\fi% \gdef\ArtType{\fboxsep=0pt{\vbox to 4mm{\vfil% {\raggedright\box\artcatbox}\vfil}}}% \gdef\@ArtType{#1}}% %%\articletype{RESEARCH ARTICLE}% \articletype{}% %% Article Title \renewcommand{\title}[2][]{% \gdef\@checktitle{#1}\ifx\@checktitle\empty\gdef\@title{#2}% \gdef\s@title{#2}\else\gdef\@title{#2}\gdef\s@title{#1}\fi% \markboth{\textit{\s@title}}{\textit{\s@title}}}% \def\subtitle#1{\gdef\@subtitle{#1}}\subtitle{}% %% Cross Link for Author & Address \def\jmkLabel#1{\@bsphack\protected@write\@auxout{}{\string\Newlabel{#1}{\@currentlabel}}\@esphack}% \def\Newlabel#1#2{\expandafter\xdef\csname X@#1\endcsname{#2}}% \def\jmkRef#1{\@ifundefined{X@#1}{0}{\csname X@#1\endcsname}}% %% Article Author(s) \let\sep\@empty% \let\authorsep\@empty% \newcount\aucount% \newcount\corraucount% \newcount\punctcount% % \def\artauthors{}% \newif\if@auemail% \newif\if@corauemail% % \def\au@and{\ifnum\punctcount=2\ and\else\unskip, \advance\punctcount by -1 \fi}% % \def\author{\advance\aucount by 1\@ifstar\@@corrauthor\@@author}% % \newcommand{\@@author}[2][]{\def\@authfrstarg{#1}\@corauemailfalse% \g@addto@macro\artauthors{% \ifnum\aucount=1% \global\@auemailtrue% \else% \global\@auemailfalse% \fi% \Authorfont% \def\baselinestretch{1}% \authorsep{#2}\unskip\ifx\@authfrstarg\empty\else\textsuperscript{\smash{{% \@for\@@affmark:=#1\do{\edef\affnum{\@ifundefined{X@\@@affmark}{\@@affmark}{\jmkRef{\@@affmark}}}% \unskip\sep\affnum\let\sep=,}}}}\fi% \def\authorsep{{\au@and} }%%% \global\let\sep\@empty\global\let\@corref\@empty% }}% % \newcommand{\@@corrauthor}[2][]{\def\@authfrstarg{#1}\@corauemailtrue\advance\corraucount by 1% \g@addto@macro\artauthors{% \global\@auemailtrue% \Authorfont% \def\baselinestretch{1}% \authorsep{#2}\unskip\ifx\@authfrstarg\empty\else\textsuperscript{\smash{{% \@for\@@affmark:=#1\do{\edef\affnum{\@ifundefined{X@\@@affmark}{\@@affmark}{\jmkRef{\@@affmark}}}% \unskip\sep\affnum\let\sep=,}}}{*}\hskip-1pt}\fi\unskip% \def\authorsep{\au@and~}%%% \global\let\sep\@empty\global\let\@corref\@empty% }}% %% %% Miscellaneous macros %% %% \def\fnm#1{\leavevmode\hbox{#1}}% \def\sur#1{\unskip~\nobreak\leavevmode\hbox{#1}}% \def\spfx#1{#1}% \def\pfx#1{#1}% \def\sfx#1{#1}% \def\tanm#1{#1}% \def\dgr#1{#1}% % %% Author Email % \let\nomail\relax% \def\corrauthemail{}% \def\authemail{}% \newcount\emailcnt% \def\email#1{\global\advance\emailcnt by 1\relax% \if@corauemail% \g@addto@macro\corrauthemail{% \setcounter{footnote}{0}% \textcolor{blue}{#1};\ % }% \else% \g@addto@macro\authemail{% \setcounter{footnote}{0}% \textcolor{blue}{#1};\ % }% \fi} %% Corrseponding Address \def\@copycorthanks{}% \def\auaddress{}% \def\@auaddress{}% \newcounter{affn}% \newcount\addcount% To check the count of address \renewcommand\theaffn{\arabic{affn}}% \def\affil{\advance\addcount by 1\@ifstar\@@coraddress\@@address}% \newcommand{\@@coraddress}[2][]{%\advance\addcount by 1 \g@addto@macro\auaddress{% \stepcounter{affn}% \xdef\@currentlabel{\theaffn}% \jmkLabel{\theaffn}% {\textsuperscript{#1*}#2.\par} } } %% Macros for present address \newif\ifpresentaddress% \def\@presentaddresstxt{}% \def\presentaddresstxt#1{\gdef\@presentaddresstxt{#1:}}\presentaddresstxt{Present Address}% \newcommand{\presentaddress}[1]{\gdef\@presentaddresstext{\@presentaddresstxt\par#1}\global\presentaddresstrue}% %% Macros for equally contributed \newif\ifequalcont% %\def\@equalconttxt{}% %\def\equalcontxt#1{\gdef\@equalconttxt{#1}}\equalcontxt{These authors contributed equally to this work.}% %\newcommand{\equalcont}[1][\@equalconttxt]{\gdef\@equalconttext{#1}\g@addto@macro\artauthors{$^{\dagger}$}\global\equalconttrue}% \def\@equalconttxt{}% \def\equalcontxt#1{\gdef\@equalconttxt{#1}}\equalcontxt{}% \newcommand{\equalcont}[1]{\gdef\@equalconttext{#1}\g@addto@macro\artauthors{$^{\dagger}$}\global\equalconttrue}% %% Author Address \newcommand{\@@address}[2][]{%%\advance\addcount by 1 \g@addto@macro\auaddress{% \stepcounter{affn}% \xdef\@currentlabel{\theaffn}% \jmkLabel{\theaffn}% {\textsuperscript{#1}#2.\par} }%\theaffn } %% Address tagging \newcommand{\orgdiv}[1]{#1}% \newcommand{\orgname}[1]{#1}% \newcommand{\orgaddress}[1]{#1}% \newcommand{\street}[1]{#1}% \newcommand{\postcode}[1]{#1}% \newcommand{\city}[1]{#1}% \newcommand{\state}[1]{#1}% \newcommand{\country}[1]{#1}% %% Article notes \def\@artnote{}% \def\artnote#1{\gdef\@artnote{#1}}% %% Miscellaneous notes \def\@miscnote{}% \def\miscnote#1{\gdef\@miscnote{\par\addvspace{3pt}#1}}% %% Motto \def\mottofont{\reset@font\fontfamily{\rmdefault}\fontsize{8.5bp}{10bp}\fontshape{it}\selectfont\raggedright} % \let\@motto\@empty \def\mottoraggedright{\rightskip0mm\leftskip=42mm plus 1fil\parfillskip=0pt\relax}% \newcommand{\motto}[2][]{\gdef\@headcheck{#1}\gdef\@motto{\@headcheck\ifx\@headcheck\@empty\vskip12pt\else\fi{\mottofont\mottoraggedright#2\par}}} %% Article Abstract \newcommand\abstracthead{\@startsection {section}{1}{\z@}{-22pt \@plus0ex \@minus0ex}{3pt}{\abstractheadfont}} \newcommand\subabstracthead{\@startsection{subsection}{2}{\z@}{3pt \@plus0ex \@minus0ex}{-.5em}{\abstractsubheadfont}} \def\@abstract{}% \long\def\abstract#1{\def\@abstract{% \let\paragraph\subabstracthead% \abstractfont% \abstracthead*{\abstractname}% #1\par}}% \def\printabstract{\ifx\@abstract\empty\else\@abstract\fi\par}% \def\printkeywords{\ifx\@keywords\empty\else\@keywords\fi\par}% % %% Keywords \def\keywordname{Keywords}% \def\keywords#1{\ifx#1\empty\else\def\@keywords{\par\addvspace{10pt}{\keywordfont{\bfseries\keywordname:} #1\par}}\fi}% \def\@keywords{}% %% PACs \def\pacsbullet{\hbox{\hskip2.5pt,\hskip2.5pt}}% \def\change@commas#1,#2{% \ifx#2\@empty% #1% \else% #1\nobreak\hbox{\pacsbullet}\allowbreak\expandafter\change@commas% \fi% #2}% \newcommand\keywordhead[1]{\par\addvspace{10pt}% {{\keywordfont\bfseries#1:\ }}}% \newcommand{\pacs}[1]{\keywordhead{\pacsname}#1}% % \newcount\PacsCount% \PacsCount=0% % \newcount\PacsTmpCnt% \PacsTmpCnt=1% % \gdef\StorePacsText#1#2{% \edef\GetRoman{\romannumeral#1}% \expandafter\gdef\csname\GetRoman StorePacsTxt\endcsname{#2}% }% % \let\oldpacs\pacs% \renewcommand\pacs[2][PAC Codes]{\gdef\pacsname{{\bfseries#1}}\gdef\@pacs{\keywordfont\raggedright\oldpacs\change@commas#2,\@empty\par} \StepUpCounter{\PacsCount}% \StorePacsText{\the\PacsCount}{\gdef\pacsname{{\bfseries#1}}\keywordfont\raggedright\oldpacs\change@commas#2,\@empty}% }% \def\@pacs{}% %% Glossary \def\gloshead{Glossary}% \newenvironment{glos}[1][\gloshead]{\begingroup\parindent=0pt% \section*{#1} \def\item[##1]{##1,\ }}{% \endgroup}% % %% Article History \def\received#1{\g@addto@macro\@history{{Received #1}}}% \def\revised#1{\g@addto@macro\@history{{; revised #1}}}% \def\accepted#1{\g@addto@macro\@history{{; accepted #1}}}% %% Remark on Front page %% \newdimen\FMremarkdim% \newcommand{\FMremark}{\begingroup\parindent=0pt\parskip=0pt% \if@referee\singlespacing\fi% \fboxsep=6pt\fboxrule=0.5pt% \FMremarkdim=\textwidth%%\paperwidth% \advance\FMremarkdim-\fboxsep% \advance\FMremarkdim-2\fboxrule% \if@referee\vskip-21pt\fi% %%\fbox{\vbox{\hsize=\FMremarkdim\small% \unvbox\fmremarkbox %%}}% \endgroup} \newbox\fmremarkbox% \newenvironment{fmremark}{\begingroup\parindent=0pt% \fboxsep=6pt\fboxrule=0.5pt% \FMremarkdim=\textwidth%%\paperwidth% \advance\FMremarkdim-\fboxsep% \advance\FMremarkdim-2\fboxrule% \global\setbox\fmremarkbox\vbox\bgroup\small% }{\egroup\endgroup} %% Article Header Definition \renewcommand{\@maketitle}{\newpage\null% \if@remarkboxon\vbox to 0pt{\vspace*{-78pt}\hspace*{-18pt}\FMremark}\else\vskip21pt\fi%%\par% \hsize\textwidth\parindent0pt%%%\vskip7pt% %% Aritle Type {\hbox to \textwidth{{\Artcatfont\ArtType\hfill}\par}} %% Aritle Title \ifx\@title\empty\else% \removelastskip\vskip20pt\nointerlineskip% {\Titlefont\@title\par} %\addcontentsline{toc}{chapter}{\@title}% for bookmarks \fi% %% Aritle SubTitle \ifx\@subtitle\empty\else% \vskip9pt% {{\SubTitlefont\@subtitle\par}} \fi% %% Aritle Authors, Address and Correspondings \ifnum\aucount>0 \global\punctcount\aucount% \vskip20pt% \artauthors\par%% authors and emails {\vskip7pt\addressfont\auaddress\par%% corresponding adress \removelastskip\vskip24pt% \ifnum\emailcnt>0\relax% \ifx\corrauthemail\@empty\else{\ifnum\aucount>1*\fi}% Corresponding author(s). E-mail(s): \corrauthemail\par\fi% \ifx\authemail\@empty\else Contributing authors:\ \authemail\fi% \fi% \ifequalcont{\par$^{\dagger}$\@equalconttext\par}\fi% \removelastskip\vskip24pt% \ifpresentaddress{\par\@presentaddresstext\par}\fi% } \fi% {\printabstract\par}% {\printkeywords\par}% \ifx\@pacs\empty\else% \loop\ifnum\PacsCount>0% \csname\romannumeral\PacsTmpCnt StorePacsTxt\endcsname\par% \StepDownCounter{\PacsCount}% \StepUpCounter{\PacsTmpCnt}% \repeat% \fi% %%{\printhistory\par}% %%{\ifx\@motto\empty\else\@motto\fi}% \removelastskip\vskip36pt\vskip0pt}% \usepackage{cuted}% \@ifpackageloaded{cuted}{\gdef\@setmarks{}}{}% %% Printing Article Header \newdimen\firstpagehtcheck \renewcommand\maketitle{\par \@afterindentfalse% \begingroup \gdef\UrlFont{\rmfamily}% \renewcommand\thefootnote{\@fnsymbol\c@footnote}% \def\@makefnmark{\rlap{\@textsuperscript{\normalfont\smash{\@thefnmark}}}}% \long\def\@makefntext##1{\parindent 1em\noindent\small\selectfont \hbox{\@textsuperscript{\normalfont\@thefnmark}}##1}% \if@twocolumn \ifnum \col@number=\@ne% \setbox0=\vbox{\@maketitle} \firstpagehtcheck=\ht0% \advance\firstpagehtcheck by \dp0% \ifdim\firstpagehtcheck>\textheight% \setbox1=\vsplit0to2\textheight% \setbox1=\vbox{\unvbox1}% \setbox2=\vbox{\unvbox0}% \unvbox1% \stripsep=0pt% \begin{strip} \unvbox2% \end{strip} \else \twocolumn[\@maketitle]% \fi \else \@maketitle \fi% \else% \newpage% \global\@topnum\z@% Prevents figures from going at top of page. \@maketitle% \fi% \endgroup% \ifx\@artnote\@empty\else\footnoteA{\@artnote}\fi% \ifx\@miscnote\@empty\else\footnoteA{\@miscnote\par}\fi% \setcounter{footnote}{0}% \global\let\thanks\relax% \global\let\artnote\relax% \global\let\maketitle\relax% \global\let\@maketitle\relax% \global\let\@thanks\@empty% \global\let\@author\@empty% \global\let\@date\@empty% \global\let\title\relax% \global\let\author\relax% \global\let\date\relax% \global\let\and\relax% \pagestyle{headings}% %%%print continuous abstract on next page \@afterheading% %%\vskip-18pt% this is included to avoid vertical space at the beginning of left column on article opening pages }% % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Page Styles %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % \def\opheaderfont{\reset@font\fontsize{10bp}{0bp}\selectfont}% \def\headerfont{\reset@font\fontsize{10bp}{0bp}\selectfont}% \def\footerfont{\reset@font\fontsize{10bp}{0bp}\selectfont}% %% Regular Page Style \def\ps@headings{% \def\@oddfoot{\hfill\thepage\hfill}% \let\@evenfoot\@oddfoot% \def\@evenhead{% \vbox to 0pt{\vspace*{-48pt}% \hbox to \hsize{\hfill \relax\hfill}}\par%% \hspace*{-\textwidth}\hbox to \hsize{\hfill}}% \def\@oddhead{% \vbox to 0pt{\vspace*{-48pt}% \hbox to \hsize{\hfill \relax\hfill}}\par%% \hspace*{-\textwidth}\hbox to \hsize{\hfill}}% \let\@mkboth\markboth% }% %% Opening Page Style \def\ps@titlepage{% %%\def\@oddhead{\vbox{\vskip-36pt\hbox to \textwidth{\hfill\includegraphics{springer-nature-logo}\hspace*{-1pt}}}}% %%\let\@oddhead\@empty\let\@evenhead\@empty% \def\@oddhead{% \vbox to 0pt{\vspace*{-38pt}% \hbox to \hsize{\hfill \hfill}}}%% \let\@evenhead\@oddhead% \def\@oddfoot{\vbox to 18pt{\vfill\reset@font\rmfamily\hfil\thepage\hfil}}%% \def\@evenfoot{}}% \def\ps@plain{\let\@mkboth\@gobbletwo% \let\@oddhead\@empty\let\@evenhead\@empty% \def\@oddfoot{\vbox to 18pt{\vfill\reset@font\rmfamily\hfil ddd\thepage\hfil}}% \let\@evenfoot\@oddfoot}% % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Sections %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % \def\numbered{\setcounter{secnumdepth}{3}}% \def\unnumbered{\setcounter{secnumdepth}{0}}% \numbered%% default is numbered Sections \renewcommand\thesection {\@arabic\c@section}% \renewcommand\thesubsection {\thesection.\@arabic\c@subsection}% \renewcommand\thesubsubsection{\thesubsection.\@arabic\c@subsubsection}% \renewcommand\theparagraph {\thesubsubsection.\@arabic\c@paragraph}% \renewcommand\thesubparagraph {\theparagraph.\@arabic\c@subparagraph}% %% \def\@seccntformat#1{\csname the#1\endcsname\hskip.5em}% \def\@sect#1#2#3#4#5#6[#7]#8{% \ifnum #2>\c@secnumdepth \let\@svsec\@empty \else \refstepcounter{#1}% \protected@edef\@svsec{\@seccntformat{#1}\relax}% \fi \@tempskipa #5\relax \ifdim \@tempskipa>\z@ \begingroup #6{% \@hangfrom{\hskip #3\relax\@svsec}% \interlinepenalty \@M #8\@@par}% \endgroup \csname #1mark\endcsname{#7}% \addcontentsline{toc}{#1}{% \ifnum #2>\c@secnumdepth \else \protect\numberline{\csname the#1\endcsname}% \fi #7}% \else \def\@svsechd{% #6{\hskip #3\relax \@svsec #8.}% \csname #1mark\endcsname{#7}% \addcontentsline{toc}{#1}{% \ifnum #2>\c@secnumdepth \else \protect\numberline{\csname the#1\endcsname}% \fi #7}}% \fi \@xsect{#5}} % \def\sectionfont{\reset@font\fontfamily{\rmdefault}\fontsize{14bp}{16bp}\bfseries\selectfont\raggedright\boldmath}% \def\subsectionfont{\reset@font\fontfamily{\rmdefault}\fontsize{12bp}{14bp}\bfseries\selectfont\raggedright\boldmath}% \def\subsubsectionfont{\reset@font\fontsize{11bp}{13bp}\bfseries\selectfont\raggedright\boldmath}% \def\paragraphfont{\reset@font\fontsize{10bp}{12bp}\bfseries\itshape\selectfont\raggedright}% % \def\subparagraphfont{\itshape}% \def\bmheadfont{\reset@font\fontfamily{\rmdefault}\fontsize{10bp}{12bp}\bfseries\selectfont\raggedright\boldmath}% % \renewcommand\section{\@startsection{section}{1}{\z@}% {-12pt \@plus -4pt \@minus -2pt}% {9pt}% {\sectionfont}} \renewcommand\subsection{\@startsection{subsection}{2}{\z@}% {-12pt \@plus -4pt \@minus -2pt}% {6pt}% {\subsectionfont}} \renewcommand\subsubsection{\@startsection{subsubsection}{3}{\z@}% {-12pt \@plus -4pt \@minus -2pt}% {6pt}% {\subsubsectionfont}} \renewcommand\paragraph{\@startsection{paragraph}{4}{\z@}% {-12pt \@plus -4pt \@minus-2pt}% {3pt}% {\paragraphfont}} \renewcommand\subparagraph{\@startsection{subparagraph}{5}{\z@}% {6pt \@plus1ex \@minus.2ex}% {-1em}% {\subparagraphfont}} \newcommand\bmhead{\@startsection{subparagraph}{5}{\z@}% {6pt \@plus1ex \@minus .2ex}% {-1em}% {\bmheadfont}} % \def\@startsection#1#2#3#4#5#6{% \if@noskipsec \leavevmode \fi \par \@tempskipa #4\relax \@afterindenttrue \ifdim \@tempskipa <\z@ \@tempskipa -\@tempskipa \@afterindentfalse \fi \if@nobreak \everypar{}% \else \addpenalty\@secpenalty\addvspace\@tempskipa \fi \@ifstar {\@ssect{#3}{#4}{#5}{#6}}% {\@dblarg{\@sect{#1}{#2}{#3}{#4}{#5}{#6}}}} % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Lists %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % \newdimen\labelwidthi% \newdimen\labelwidthii% \newdimen\labelwidthiii% \newdimen\labelwidthiv% \def\normal@labelsep{0.5em}% \labelsep\normal@labelsep% \settowidth{\labelwidthi}{(iii)}% \settowidth{\labelwidthii}{(d)}% \settowidth{\labelwidthiii}{(iii)}% \settowidth{\labelwidthiv}{(M)}% \leftmargini\labelwidthi \advance\leftmargini\labelsep \leftmarginii\labelwidthii \advance\leftmarginii\labelsep \leftmarginiii\labelwidthiii \advance\leftmarginiii\labelsep \leftmarginiv\labelwidthiv \advance\leftmarginiv\labelsep \def\setleftmargin#1#2{\settowidth{\@tempdima}{#2}\labelsep\normal@labelsep \csname labelwidth#1\endcsname\@tempdima \@tempdimb\@tempdima \advance\@tempdimb\labelsep \csname leftmargin#1\endcsname\@tempdimb} \def\@listI{\leftmargin\leftmargini \labelwidth\labelwidthi \labelsep\normal@labelsep \topsep \z@ \partopsep\z@ \parsep\z@ \itemsep\z@ \listparindent 1em} \def\@listii{\leftmargin\leftmarginii \labelwidth\labelwidthii \labelsep\normal@labelsep \topsep\z@ \partopsep\z@ \parsep\z@ \itemsep\z@ \listparindent 1em} \def\@listiii{\leftmargin\leftmarginiii \labelwidth\labelwidthiii \labelsep\normal@labelsep \topsep\z@ \partopsep\z@ \parsep\z@ \itemsep\z@ \listparindent 1em} \def\@listiv{\leftmargin\leftmarginiv \labelwidth\labelwidthiv \labelsep\normal@labelsep \topsep\z@ \partopsep\z@ \parsep\z@ \itemsep\z@ \listparindent 1em} \let\@listi\@listI \@listi % \setlength \labelsep {.5em} \setlength \labelwidth{\leftmargini} \addtolength\labelwidth{-\labelsep} \@beginparpenalty -\@lowpenalty \@endparpenalty -\@lowpenalty \@itempenalty -\@lowpenalty \def\labelitemi{$\bullet$} \def\labelitemii{$\cdot$} \def\labelenumi{\theenumi.} \def\theenumi{\arabic{enumi}} \def\labelenumii{(\alph{enumii})} \def\theenumii{\alph{enumii}} \def\labelenumiii{(\roman{enumiii})}\def\theenumiii{\roman{enumiii}} \def\labelenumiv{(\Alph{enumiv})} \def\theenumiv{\Alph{enumiv}} % %%%%%%%%%%%%%%%%%%%%%%%%%%% Ordered & Unordered List %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % \def\listfont{\normalsize}% % \def\enumargs{% \listfont% \leftmargini0pt% \leftmarginii0pt% \leftmarginiii0pt% \ifnum\@enumdepth=3\topsep0pt\else\ifnum\@enumdepth=2\topsep0pt\else\topsep 6pt\fi\fi% \partopsep \z@% \itemsep \z@% \parsep \z@% \labelsep 0.5em% \rightmargin \z@% \raggedright% \listparindent \parindent% \itemindent \z@}% \def\enumerate{% \@ifnextchar[{\@numerate}{\@numerate[0.]}} \def\@numerate[#1]{\par% \ifnum \@enumdepth >3 \@toodeep\else \advance\@enumdepth \@ne \edef\@enumctr{enum\romannumeral\the\@enumdepth} \list{\csname label\@enumctr\endcsname}{% \enumargs% \setlength{\leftmargin}{\csname leftmargin\romannumeral\the\@enumdepth\endcsname} \usecounter{\@enumctr} \settowidth\labelwidth{#1} \addtolength{\leftmargin}{\labelwidth} \addtolength{\leftmargin}{\labelsep} \def\makelabel##1{\hss\llap{##1}}}% \fi } \let\endenumerate\endlist %%Unnumbered list%% \def\unenumargs{% \listfont% \leftmargini\parindent% \topsep6pt% \partopsep \z@% \itemsep \z@% \parsep \z@% \labelsep 0\p@% \rightmargin \z@% \raggedright% \listparindent \parindent% \itemindent -12pt}% \def\unenumerate{% \@ifnextchar[{\@unenumerate}{\@unenumerate[0.]}} \def\@unenumerate[#1]{\par% \ifnum \@enumdepth >3 \@toodeep\else \advance\@enumdepth \@ne \edef\@enumctr{enum\romannumeral\the\@enumdepth} \list{}{% \unenumargs \setlength{\leftmargin}{\csname leftmargin\romannumeral\the\@enumdepth\endcsname} \usecounter{\@enumctr} \settowidth\labelwidth{#1} \addtolength{\leftmargin}{0pt} \addtolength{\leftmargin}{0pt} \def\makelabel##1{\hss\llap{##1}}}% \fi } \let\endunenumerate\endlist% %% bulleted list \def\itemargs{% \listfont% \leftmargini0pt% \leftmarginii0pt% \ifnum\@enumdepth=3\topsep0pt\else\ifnum\@enumdepth=2\topsep0pt\else\topsep 6pt\fi\fi% \partopsep \z@% \itemsep \z@% \parsep \z@% \labelsep 0.5em% \rightmargin \z@% \raggedright% \listparindent \z@% \itemindent \z@}% \renewcommand\labelitemi{\raise1pt\hbox{\textbullet}}% \renewcommand\labelitemii{\textendash}% \def\itemize{% \@ifnextchar[{\@itemize}{\@itemize[$\bullet$]}} \def\@itemize[#1]{\par% \ifnum \@itemdepth >3 \@toodeep\else \advance\@itemdepth \@ne \edef\@itemctr{item\romannumeral\the\@itemdepth} \list{\csname label\@itemctr\endcsname}{% \itemargs \setlength{\leftmargin}{\csname leftmargin\romannumeral\the\@itemdepth\endcsname} \settowidth\labelwidth{#1} \addtolength{\leftmargin}{\labelwidth} \addtolength{\leftmargin}{\labelsep} \def\makelabel##1{\hss \llap{##1}}}% \fi } \let\enditemize\endlist % \def\quote{\list{}{\itemindent\z@ \leftmargin 1em \rightmargin \z@}% \item[]} \let\endquote\endlist % \def\descriptionlabel#1{\hspace\labelsep \itshape #1} \def\description{\list{}{\labelwidth\z@ \leftmargin \z@ \topsep6pt\itemindent \z@ %-\leftmargin \let\makelabel\descriptionlabel}} \let\enddescription\endlist % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Float %%%%%%%%%%%%%%%%%%%%%%%%%%%% \setlength\abovecaptionskip{2.25\p@}% \setlength\belowcaptionskip{6\p@}% \setlength\arraycolsep{2\p@}% \setlength\tabcolsep{6\p@}% \setlength\arrayrulewidth{.4\p@}% \setlength\doublerulesep{2\p@}% \setlength\tabbingsep{\labelsep}% \def\fnum@figure{{\bfseries\figurename\space\thefigure}}% \def\fnum@table{{\bfseries\tablename\space\thetable}}% \def\FigName{figure}% \long\def\@makecaption#1#2{% \ifx\FigName\@captype \vskip\abovecaptionskip \@figurecaption{#1}{#2} \else \@tablecaption{#1}{#2} \vskip\belowcaptionskip \fi% } %% Figure \def\figurecaptionfont{\reset@font\fontfamily{\rmdefault}\fontsize{8}{9.5}\selectfont}% \newdimen\figwidth% \newdimen\figheight% \newdimen\sidecapwidth \newdimen\wrapcapline% \newdimen\totalwrapline% \newdimen\wraptotline% %% Figures macro \newbox\figurebox% \newbox\wrapfigcapbox \def\FIG#1#2{% \setbox\figurebox\hbox{#1}% %% Figure dimensions \figwidth\wd\figurebox% \figheight\ht\figurebox% {\parbox{\hsize}{% \centerline{\box\figurebox}% %% Caption #2}}} %% Figures caption \newbox\figcapbox \newbox\capbox \long\def\@figurecaption#1#2{{\figurecaptionfont{\bfseries#1}\hskip.7em#2\par}}% \newenvironment{unnumfigure}{\begingroup\setlength{\topsep}{12pt}% \begin{center}}{\end{center}\endgroup} % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % \@ifpackageloaded{booktabs}{\cmidrulewidth=.15pt}{}% % \def\tablecaptionfont{\reset@font\fontsize{8bp}{9.5bp}\selectfont}% \def\tablebodyfont{\reset@font\fontsize{8bp}{9.5bp}\selectfont}% \def\tablecolheadfont{\reset@font\fontsize{8bp}{9.5bp}\selectfont\bfseries\boldmath}% \def\tablefootnotefont{\reset@font\fontsize{8bp}{9.5bp}\selectfont}% %% Table Macro \newskip\headwidthskip% \def\tabraggedcenter{\leftskip=0pt plus 0.5fil\rightskip=0pt plus 0.5fil\parfillskip=0pt}% \newenvironment{@processtable}[4]{% \setbox4=\hbox to \hsize{\hss% \begin{minipage}[t]{#4}% \tabraggedcenter% \caption{#1}\par% {\tablebodyfont\noindent\ignorespaces#2\par}\par\vglue6pt% {\if!#3!\else{\tablefootnotefont#3}\fi}% \end{minipage}% \hss}% \box4\par}% \newcommand\TBL[3]{\begingroup% % \if!#1!\let\caption\relax\fi% % \global\setbox\temptbox=\hbox{\bgroup{\tablebodyfont#2}\egroup}% \global\tempdime\wd\temptbox% \@processtable{#1}{\global\headwidthskip=\tempdime% \vbox{#2}}{#3}{\tempdime}% \endgroup}% %% Table Caption \newbox\tabcapbox% \newbox\temptbox% \newdimen\tempdime% \newdimen\tabhtdime% \long\def\@tablecaption#1#2{% \setbox\tabcapbox\vbox{\tablecaptionfont\raggedright% {\bfseries #1}{\hskip2mm}#2\vphantom{y}\par}% \box\tabcapbox% } %% Table Column Heads \def\TCH#1{{\tablecolheadfont #1}} %% Table Footnotes \newenvironment{tablenotes}{\list{}{\setlength{\labelsep}{0pt}% \setlength{\labelwidth}{0pt}% \setlength{\leftmargin}{0pt}% \setlength{\rightmargin}{0pt}% \setlength{\topsep}{-6pt}% \setlength{\itemsep}{2pt}% \setlength{\partopsep}{0pt}% \setlength{\listparindent}{0em}% \setlength{\parsep}{0pt}}% \item\relax% }{\endlist}% \def\tnote#1{$^{#1}$}%% %% Table Rules \def\toprule{%\noalign{\vskip3pt} \noalign{\ifnum0=`}\fi \hrule \@height 0\p@ \@width 0pt \hrule \@height 0.75\p@ % <- rule height \hrule \@height 5pt \@width 0pt \futurelet\@tempa\@xhline} % Middle rule \def\midrule{\noalign{\ifnum0=`}\fi% \hrule \@height 3pt \@width 0pt \hrule \@height .5pt % <- rule height \hrule \@height 5pt \@width 0pt \futurelet \@tempa\@xhline} % Bottom rule \def\botrule{\noalign{\ifnum0=`}\fi \hrule \@height 3pt \@width 0pt \hrule \@height 0.75\p@ % <- rule height \hrule \@height 3pt \@width 0pt \futurelet\@tempa\@xhline} % \def\@@@cmidrule[#1-#2]#3#4{\global\@cmidla#1\relax \global\advance\@cmidla\m@ne \ifnum\@cmidla>0\global\let\@gtempa\@cmidrulea\else \global\let\@gtempa\@cmidruleb\fi \global\@cmidlb#2\relax \global\advance\@cmidlb-\@cmidla \global\@thisrulewidth=#3 \@setrulekerning{#4} \ifnum\@lastruleclass=\z@\vskip 3\p@\fi \ifnum0=`{\fi}\@gtempa \noalign{\ifnum0=`}\fi\futurenonspacelet\@tempa\@xcmidrule} \def\@xcmidrule{% \ifx\@tempa\cmidrule \vskip-\@thisrulewidth \global\@lastruleclass=\@ne \else \ifx\@tempa\morecmidrules \vskip \cmidrulesep \global\@lastruleclass=\@ne\else \vskip 5\p@ \global\@lastruleclass=\z@ \fi\fi \ifnum0=`{\fi}} \let\cline\cmidrule \usepackage[figuresright]{rotating}% \usepackage{threeparttable} \let\tableorg\table% \let\endtableorg\endtable% \let\sidewaystableorg\sidewaystable% \let\endsidewaystableorg\endsidewaystable% \renewenvironment{table}[1][]% {\begin{tableorg}[#1]% \begin{center} \begin{threeparttable} \tablebodyfont% \renewcommand\footnotetext[2][]{{\removelastskip\vskip3pt% \let\tablebodyfont\tablefootnotefont% \hskip0pt\if!##1!\else{\smash{$^{##1}$}}\fi##2\par}}% }{\end{threeparttable}\end{center}\end{tableorg}} \renewenvironment{sidewaystable}[1][]% {\begin{sidewaystableorg}[#1]% \begin{center} \begin{threeparttable} \tablebodyfont% \renewcommand\footnotetext[2][]{{\removelastskip\vskip3pt% \let\tablebodyfont\tablefootnotefont% \hskip0pt\if!##1!\else{\smash{$^{##1}$}}\fi##2\par}}% }{\end{threeparttable}\end{center}\end{sidewaystableorg}} %%%%%%%%%%%%%%%%%%%%%%%%%%%% Other Env. %%%%%%%%%%%%%%%%%%%%%%%%% \def\quotefont{\reset@font\fontfamily{\rmdefault}\fontsize{9}{11}\selectfont}% \renewenvironment{quote} {\list{}{\topsep=0pt\topsep6pt\leftmargin=1em\raggedright\quotefont}% \item\relax} {\endlist} % %%%%%%%%%%%%%%%%%%%%%%%%%%%% Appendix %%%%%%%%%%%%%%%%%%%%%%%%% % \newif\ifbackmatter% \newcommand{\backmatter}{\global\backmattertrue}% \usepackage[title]{appendix}% \@ifpackageloaded{appendix}{% % \renewenvironment{appendices}{% \@resets@pp \if@dotoc@pp \if@dopage@pp % both page and toc \if@chapter@pp % chapters \clear@ppage \fi \appendixpage \else % toc only \if@chapter@pp % chapters \clear@ppage \fi \addappheadtotoc \fi \else \if@dopage@pp % page only \appendixpage \fi \fi \if@chapter@pp \if@dotitletoc@pp \@redotocentry@pp{chapter} \fi \else \if@dotitletoc@pp \@redotocentry@pp{section} \fi \if@dohead@pp \def\sectionmark##1{% \if@twoside \markboth{\@formatsecmark@pp{##1}}{} \else \markright{\@formatsecmark@pp{##1}}{} \fi} \fi \if@dotitle@pp \def\sectionname{\appendixname} \def\@seccntformat##1{\@ifundefined{##1name}{}{\csname ##1name\endcsname\ }% \csname the##1\endcsname\quad} \fi \fi }{% \@ppsaveapp\@pprestoresec} %% \AtBeginDocument{% % \let\oldappendices\appendices% \let\oldendappendices\endappendices% %% \renewenvironment{appendices}{% \setcounter{figure}{0}% \setcounter{table}{0}% \setcounter{equation}{0}% %% \begin{oldappendices}% \gdef\thefigure{\@Alph\c@section\arabic{figure}}% \gdef\thetable{\@Alph\c@section\arabic{table}}% \gdef\theequation{\@Alph\c@section\arabic{equation}}% }{\end{oldappendices}} } %% }{} % %%%%%%%%%%%%%%%%%%%%%%%%%%% Article History %%%%%%%%%%%%%%%%%%%% % \def\@history{} \def\printhistory{{\par\addvspace{8pt}% \historyfont\noindent% \ifx\@history\empty\gdef\@history{Received xx xxx xxxx}\fi\@history\par}}% % %%%%%%%%%%%%%%%%%%%%%%% Footnotes %%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % \renewcommand\@makefntext[1]{% \hskip8pt{\smash{\@makefnmark}}#1} % \RequirePackage{hyperref}% %%\RequirePackage{hypcap}% \gdef\breakurldefns{% \if@pdflatex\else% \RequirePackage[hyphenbreaks]{breakurl}% % \let\href\burlalt% \fi}% \breakurldefns% % \bgroup % \catcode`\&=12\relax % \hyper@normalise\burl@addtocharlistbefore{%} % \hyper@normalise\burl@addtocharlistafter{:/.?#&_,;!=+~}%% for extra breaks in url % \egroup % \burl@defifstructure % \hypersetup{% colorlinks, breaklinks=true, plainpages=false,% citecolor=blue, linkcolor=blue, urlcolor=blue, bookmarksopen=true,% bookmarksnumbered=false,% bookmarksdepth=5% } % \AtBeginDocument{\renewcommand\UrlFont{\rmfamily}}% % \AtBeginDocument{% \@ifpackageloaded{natbib}{% \renewcommand\bibsection{% \section*{\refname}% }% }{}% }% % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % \pagestyle{headings}% \pagenumbering{arabic}% \sloppy% \frenchspacing% \flushbottom% %%% special parameters for TeX \adjdemerits=100 \linepenalty=100 % %%%%%%%%%%%%%%% Biography % \RequirePackage{wrapfig}% % % % \begin{wrapfigure}[12]{r}[34pt]{5cm}
\end{wrapfigure} % -- - ---- --- % [number of narrow lines] {placement} [overhang] {width of figure} \newcount\wraplines% %%\wraplines=5% % \newbox\@authorfigbox% \newskip\@authorfigboxdim% % \newskip\biofigadjskip% \biofigadjskip=0pt% % \def\authbiotextfont{\reset@font\fontsize{8bp}{9.5bp}\selectfont}% % \newenvironment{biography}[2]{\par\addvspace{11.5pt plus3.375pt minus1.6875pt}%\lineno@off% \def\author##1{{\bfseries##1}}% \if!#1!\def\@authorfig{}\else\def\@authorfig{{#1}}\fi% \setbox\@authorfigbox=\hbox{#1}% \@authorfigboxdim=\wd\@authorfigbox% \if@iicol\advance\@authorfigboxdim by -10pt\else\advance\@authorfigboxdim by -2pt\fi% \wraplines=9\fboxrule=1pt\fboxsep=6pt% \noindent{% \ifx\@authorfig\@empty\else\unskip% \begin{wrapfigure}[\wraplines]{l}[0pt]{\@authorfigboxdim}%{38.25mm}% \vskip-19pt\addvspace{\biofigadjskip}% \@authorfig% \end{wrapfigure}% \fi% {\authbiotextfont#2\par}% \par% }}{\par\addvspace{10.5pt plus3.375pt minus1.6875pt}} % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Theorem %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % \@ifpackageloaded{amsthm}{% % %\let\proof\relax% %\let\endproof\relax% \def\@begintheorem#1#2[#3]{% \deferred@thm@head{\the\thm@headfont \thm@indent \@ifempty{#1}{\let\thmname\@gobble}{\let\thmname\@iden}% \@ifempty{#2}{\let\thmnumber\@gobble}{\let\thmnumber\@iden}% \@ifempty{#3}{\let\thmnote\@gobble}{\let\thmnote\@iden}% \thm@swap\swappedhead\thmhead{#1}{#2}{#3}% \the\thm@headpunct \thmheadnl % possibly a newline. \hskip\thm@headsep }% \ignorespaces } \def\@endtheorem{\endtrivlist\@endpefalse} \AtBeginDocument{% % \DeclareRobustCommand{\S}{\ifmmode\mathsection\else\textsection\fi} \DeclareSymbolFont{AMSa}{U}{msa}{m}{n}% \DeclareMathSymbol{\opensquare}{\mathord}{AMSa}{"03}% \def\qedsymbol{\ensuremath{\opensquare}}% % \newenvironment{spiproof}[1][\proofname]{\par\removelastskip%\vspace*{2pt}% \pushQED{\qed}% \small\normalfont \topsep7.5\p@\@plus7.5\p@\relax% \trivlist% \item[\hskip\labelsep% \itshape% #1\@addpunct{}]\ignorespaces% }{% \popQED\endtrivlist\@endpefalse% }% % \let\proof\spiproof\let\endproof\endspiproof% % }% % \def\thm@space@setup{% \thm@preskip=12pt% \thm@postskip=12pt} % %%%%%%%%%%%%%%%%%% StyleOne % \newtheoremstyle{thmstyleone}% Numbered {18pt plus2pt minus1pt}% Space above {18pt plus2pt minus1pt}% Space below {\small\itshape}% Body font {0pt}% Indent amount {\small\bfseries}% Theorem head font {}% Punctuation after theorem head {.5em}% Space after theorem headi {\thmname{#1}\thmnumber{\@ifnotempty{#1}{ }\@upn{#2}}% \thmnote{ {\the\thm@notefont(#3)}}}% Theorem head spec (can be left empty, meaning `normal') % \newtheoremstyle{thmstyletwo}% Numbered {18pt plus2pt minus1pt}% Space above {18pt plus2pt minus1pt}% Space below {\small\normalfont}% Body font {0pt}% Indent amount {\small\itshape}% Theorem head font {}% Punctuation after theorem head {.5em}% Space after theorem headi {\thmname{#1}\thmnumber{\@ifnotempty{#1}{ }{#2}}% \thmnote{ {\the\thm@notefont(#3)}}}% Theorem head spec (can be left empty, meaning `normal') % \newtheoremstyle{thmstylethree}% Definition {18pt plus2pt minus1pt}% Space above {18pt plus2pt minus1pt}% Space below {\small\normalfont}% Body font {0pt}% Indent amount {\small\bfseries}% Theorem head font {}% Punctuation after theorem head {.5em}% Space after theorem headi {\thmname{#1}\thmnumber{\@ifnotempty{#1}{ }\@upn{#2}}% \thmnote{ {\the\thm@notefont(#3)}}}% Theorem head spec (can be left empty, meaning `normal') % \newtheoremstyle{thmstylefour}% Proof {18pt plus2pt minus1pt}% Space above {18pt plus2pt minus1pt}% Space below {\small\normalfont}% Body font {0pt}% Indent amount {\small\itshape}% Theorem head font {}% Punctuation after theorem head {.5em}% Space after theorem headi {\global\proofthmtrue\thmname{#1} \thmnote{#3}}% Theorem head spec (can be left empty, meaning `normal') % }{} %% Macros for bibliographystyles %% % \def\bibcommenthead{\if@bibcomment\begingroup\parindent=0pt\parskip=0pt% % \removelastskip\vskip13pt\nointerlineskip% % % \vbox{\bibfont If you are submitting to one of the Nature Research journals, using the eJP % submission system, please include the references within the manuscript file itself. You may % do this by copying the reference list from your .bbl file, and pasting it into the bibliography % environment of the main manuscript .tex file.}\par% % \removelastskip\nobreak\vskip13pt\nobreak% % \endgroup\fi}% \def\bibcommenthead{}% \if@Spr@basic@refstyle% \if@Numbered@refstyle% \usepackage[numbers,sort&compress]{natbib}% \gdef\NumBib{YES}% \else% \usepackage[authoryear]{natbib}% \gdef\NumBib{NO}% \fi% \bibliographystyle{sn-basic}% \setlength{\bibsep}{1em}% \def\bibfont{\reset@font\fontfamily{\rmdefault}\normalsize\selectfont}% \fi% \if@Mathphys@numrefstyle% \usepackage[numbers,sort&compress]{natbib}% \gdef\NumBib{YES}% \bibliographystyle{sn-mathphys-num}% \setlength{\bibsep}{1em}% \def\bibfont{\reset@font\fontfamily{\rmdefault}\normalsize\selectfont}% \else% \if@Mathphys@ayrefstyle% \usepackage[authoryear]{natbib}% \gdef\NumBib{NO}% \bibliographystyle{sn-mathphys-ay}% \setlength{\bibsep}{1em}% \def\bibfont{\reset@font\fontfamily{\rmdefault}\normalsize\selectfont}% \fi\fi% \if@APS@refstyle% \usepackage[numbers,sort&compress]{natbib}% \gdef\NumBib{YES}% \bibliographystyle{sn-APS}% \setlength{\bibsep}{1em}% \def\bibfont{\reset@font\fontfamily{\rmdefault}\normalsize\selectfont}% \fi% \if@Vancouver@refstyle% \if@Numbered@refstyle% \usepackage[numbers,sort&compress]{natbib}% \gdef\NumBib{YES}% \else% \usepackage[authoryear]{natbib}% \gdef\NumBib{NO}% \fi% \bibliographystyle{sn-vancouver}% \setlength{\bibsep}{1em}% \def\bibfont{\reset@font\fontfamily{\rmdefault}\normalsize\selectfont}% \fi% \if@APA@refstyle% \if@Numbered@refstyle% \usepackage[natbibapa]{apacite}% \gdef\NumBib{YES}% \else% \usepackage[natbibapa]{apacite}% \gdef\NumBib{NO}% \fi% \bibliographystyle{sn-apacite}% \def\refdoi#1{\urlstyle{rm}\url{#1}}% \renewcommand{\doiprefix}{}% \AtBeginDocument{% \renewcommand{\BPBI}{.}% Period between initials - command from apacite.sty }% \setlength{\bibsep}{1em}% \def\bibfont{\reset@font\fontfamily{\rmdefault}\normalsize\selectfont}% \fi% \if@Chicago@refstyle% \if@Numbered@refstyle% \usepackage[numbers,sort&compress]{natbib}% \gdef\NumBib{YES}% \else% \usepackage[authoryear]{natbib}% \gdef\NumBib{NO}% \fi% \bibliographystyle{sn-chicago}% \hypersetup{urlcolor=black,colorlinks=false,pdfborder={0 0 0}}\urlstyle{same}% \setlength{\bibsep}{1em}% \def\bibfont{\reset@font\fontfamily{\rmdefault}\normalsize\selectfont}% \fi% \if@Standard@Nature@refstyle% \usepackage[numbers,sort&compress]{natbib}% \gdef\NumBib{YES}% \bibliographystyle{sn-nature}% \setlength{\bibsep}{1em}% \def\bibfont{\reset@font\fontfamily{\rmdefault}\normalsize\selectfont}% \fi% \AtBeginDocument{\allowdisplaybreaks}% \def\eqnheadfont{\reset@font\fontfamily{\rmdefault}\fontsize{16}{18}\bfseries\selectfont}% \newcommand{\eqnhead}[1]{\begingroup% \begin{center} {\eqnheadfont #1}\par% \end{center} \removelastskip\vskip24pt% \thispagestyle{titlepage}%% %%\thispagestyle{empty}% \endgroup} %% Macros for border matrix %% \newif\if@borderstar \def\bordermatrix{\@ifnextchar*{% \@borderstartrue\@bordermatrix@i}{\@borderstarfalse\@bordermatrix@i*}% } \def\@bordermatrix@i*{\@ifnextchar[{\@bordermatrix@ii}{\@bordermatrix@ii[()]}} \def\@bordermatrix@ii[#1]#2{% \begingroup \m@th\@tempdima8.75\p@\setbox\z@\vbox{% \def\cr{\crcr\noalign{\kern 2\p@\global\let\cr\endline }}% \ialign {$##$\hfil\kern 2\p@\kern\@tempdima & \thinspace % \hfil $##$\hfil && \quad\hfil $##$\hfil\crcr\omit\strut % \hfil\crcr\noalign{\kern -\baselineskip}#2\crcr\omit % \strut\cr}}% \setbox\tw@\vbox{\unvcopy\z@\global\setbox\@ne\lastbox}% \setbox\tw@\hbox{\unhbox\@ne\unskip\global\setbox\@ne\lastbox}% \setbox\tw@\hbox{% $\kern\wd\@ne\kern -\@tempdima\left\@firstoftwo#1% \if@borderstar\kern2pt\else\kern -\wd\@ne\fi% \global\setbox\@ne\vbox{\box\@ne\if@borderstar\else\kern 2\p@\fi}% \vcenter{\if@borderstar\else\kern -\ht\@ne\fi% \unvbox\z@\kern-\if@borderstar2\fi\baselineskip}% \if@borderstar\kern-2\@tempdima\kern2\p@\else\,\fi\right\@secondoftwo#1 $% }\null \;\vbox{\kern\ht\@ne\box\tw@}% \endgroup } %% Macros for line numbers %% \if@vrulerlinenumberon% % \usepackage{vruler}% % %%\setvruler[][][][][][][][][] \def\linenoon{%%\definecolor{blue}{gray}{0}% \def\tiny{\normalsize\color{black}}% \setvruler[12bp][1][1][3][1][1.18\textwidth][26pt][-7pt][0.99\textheight]% for even pages: left side; for odd pages: right side; %%\linkbluecolor }% \linenoon% \def\lineno@off{\unsetvruler}% \fi% %% url macros %% \gdef\orcidlogo{% \includegraphics{Orcidlogo.eps}% }% \gdef\orcid#1{\href{#1}{\orcidlogo}}% \endinput \ No newline at end of file diff --git a/sn-mathphys-num.bst b/sn-mathphys-num.bst new file mode 100644 index 0000000..236a058 --- /dev/null +++ b/sn-mathphys-num.bst @@ -0,0 +1,3208 @@ +%% This is file `bmc-mathphys.bst' (created: 2011-12-27) +%% Compatible with bibtex version 0.99d. +%% +%% Please submit bugs or your comments to vtex@vtex.lt +%% Start subject with a "[BMC] bibtex: " + subject +%% +%% Sorting entries is done by name and year fields! +%% +%% You are free to use this style file as you see fit, provided +%% that you do not make changes to the file. +%% If you DO make changes, you are required to rename this file. +%% +%% It may be distributed under the terms of the LaTeX Project Public +%% License, as described in lppl.txt in the base LaTeX distribution. +%% Either version 1.0 or, at your option, any later version. +%% +%% LIMITATIONS: +%% If you are getting error like +%% "Sorry---you've exceeded BibTeX's number of string global-variables" +%% that means you are using to old bibtex version. You should download latest version 0.99d. +%% (One of the binaries location is minimals.contextgarden.net/current/bin/common/) +%% +%% BibTeX programming: Linas Stonys, VTeX, Lithuania, lstonys@vtex.lt +% +% Changes: +% 2013-07-15 -- added XML output (taken from bmc_article.bst) v2.0 +% + +ENTRY + { address + author + booktitle + bnumber + chapter + doi + edition + editor + howpublished + institution + isbn + journal + key + keywords + month + note + number + organization + pages + publisher + school + series + title + type + volume + year + url + info + options + urldate + eprint + archive + archivePrefix + primaryClass + eid + adsurl + adsnote + version + } + {} + { label extra.label sort.label short.list} + +INTEGERS { output.state before.all mid.sentence after.sentence + after.block after.authors between.elements bother + Nisbn Nmonth slen set.settings tmp month.printed} + +FUNCTION {init.state.consts} +{ #0 'before.all := + #1 'mid.sentence := + #2 'after.sentence := + #3 'after.block := + #4 'after.authors := + #5 'between.elements := +} + +STRINGS { s t element} +STRINGS { longest.label last.label list.string default.list} +STRINGS { v l f j b temp.str} + +FUNCTION {output.nonnull} +{ 's := + output.state mid.sentence = + { " " * write$ newline$} + { output.state after.block = + { add.period$ write$ + newline$ + } + { + output.state after.authors = + { ": " * write$ + newline$ + } + { output.state between.elements = + { ", " * write$ newline$} + { output.state before.all = + 'write$ + { add.period$ " " * write$ newline$} + if$ + } + if$ + } + if$ + } + if$ + mid.sentence 'output.state := + } + if$ + s +} + +FUNCTION {output} +{ duplicate$ empty$ + 'pop$ + 'output.nonnull + if$ +} + +FUNCTION {output.check} +{ 't := + duplicate$ empty$ + { pop$ "empty " t * " in " * cite$ * warning$ } + 'output.nonnull + if$ +} +FUNCTION {fin.entry} +{ write$ newline$ } + +FUNCTION {stupid.colon} +{ after.authors 'output.state := } + + +FUNCTION {insert.comma} +{ output.state before.all = + 'skip$ + { between.elements 'output.state := } + if$ +} + +FUNCTION {new.sentence} +{ output.state after.block = + 'skip$ + { output.state before.all = + 'skip$ + { after.sentence 'output.state := } + if$ + } + if$ +} + +FUNCTION {not} +{ { #0 } + { #1 } + if$ +} + +FUNCTION {and} +{ 'skip$ + { pop$ #0 } + if$ +} + +FUNCTION {or} +{ { pop$ #1 } + 'skip$ + if$ +} + + +FUNCTION {field.or.null} +{ duplicate$ empty$ + { pop$ "" } + 'skip$ + if$ +} + +FUNCTION {sort.format.month} +{ 't := + t #1 #2 substring$ "01" = + t #1 #1 substring$ "1" = + t #2 #2 substring$ "" = + and or + { "January" } + { t #1 #2 substring$ "02" = + t #1 #1 substring$ "2" = + t #2 #2 substring$ "" = + and or + { "February" } + { t #1 #2 substring$ "03" = + t #1 #1 substring$ "3" = + t #2 #2 substring$ "" = + and or + { "March" } + { t #1 #2 substring$ "04" = + t #1 #1 substring$ "4" = + or + { "April" } + { t #1 #2 substring$ "05" = + t #1 #1 substring$ "5" = + or + { "May" } + { t #1 #2 substring$ "06" = + t #1 #1 substring$ "6" = + or + { "June" } + { t #1 #2 substring$ "07" = + t #1 #1 substring$ "7" = + or + { "July" } + { t #1 #2 substring$ "08" = + t #1 #1 substring$ "8" = + or + { "August" } + { t #1 #2 substring$ "09" = + t #1 #1 substring$ "9" = + or + { "September" } + { t #1 #2 substring$ "10" = + { "October" } + { t #1 #2 substring$ "11" = + { "November" } + { t #1 #2 substring$ "12" = + { "December" } + { t } % No match + if$ + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + +} + +INTEGERS {sk} +FUNCTION {is.num} +{ chr.to.int$ + duplicate$ "0" chr.to.int$ < not + swap$ "9" chr.to.int$ > not and +} + +FUNCTION {make.tag} +{ 't := + duplicate$ empty$ + { pop$ "" } + { bother #0 = + { + t "volume" = + {"\textbf{" swap$ * "}" * } + 'skip$ + if$ + } + { "\b" t * "{" * swap$ * "}" * } + if$ + } + if$ +} + + + +FUNCTION {springer.publisher} +{publisher #1 #8 substring$ "Springer" = + { "Springer" } + { publisher } + if$ +} + +FUNCTION {format.adsurl} +{ + adsurl empty$ + { "" } + {" \href{" adsurl "}" *} + if$ +} + +FUNCTION {format.adsnote} +{ + adsnote empty$ + { "" } + { ". " * adsnote *} + if$ +} + + +FUNCTION {format.soft.title} +{ + title empty$ + { "" } + { title "," *} + if$ +} + +FUNCTION {format.softmisctitle} +{ title empty$ + { ""} + { version empty$ + { title ", " *} + { title ", " * version " " *} + if$ + } + if$ +} + +FUNCTION {format.softmisc.archive} +{ + archivePrefix empty$ + { "" } + { "" } + if$ +} + +FUNCTION {format.archive} +{ + archivePrefix empty$ + { "" } + { archivePrefix ":" *} + if$ +} + +FUNCTION {format.primaryClass} +{ + primaryClass empty$ + { "" } + { "{[" primaryClass * "]}" *} + if$ +} + +FUNCTION {format.eprint} +{ eprint empty$ + { ""} + { archive empty$ + {"{\href{https://arxiv.org/abs/" eprint * "}" * + "{{" * format.archive * eprint * "}}}" *} + {"{\href{https://arxiv.org/abs/" eprint * "}" * + "{{" * format.archive * eprint * "}}}" *} + if$ + } + if$ +} + +FUNCTION {format.softmisc.eprint} +{ eprint empty$ + { ""} + { archive empty$ + {"{\href{https://ascl.net/" format.softmisc.archive * eprint * "}" * + "{{" * format.archive * eprint * "}}}" *} + {"{\href{https://ascl.net/" format.softmisc.archive * eprint * "}" * + "{{" * format.archive * eprint * "}}}" *} + if$ + } + if$ +} + +FUNCTION {format.pub.address} +{ publisher empty$ + howpublished empty$ + and + { + address empty$ + 'skip$ + { volume empty$ + 'insert.comma + 'new.sentence + if$ + address + type$ "inproceedings" = + {"conflocation"} + {"location"} + if$ + make.tag output + } + if$ + } + { + address empty$ + { publisher empty$ + {howpublished} + {springer.publisher} + if$ + "publisher" make.tag + #1 bother = + {", \blocation{???}" * } + 'skip$ + if$ + output + } + { + publisher empty$ + {howpublished } + {springer.publisher } + if$ + "publisher" make.tag output + insert.comma + address "location" make.tag output + } + if$ + } + if$ +} + +INTEGERS { nameptr namesleft numnames } + +FUNCTION {mk.tag} +{ 'temp.str := + duplicate$ empty$ + { pop$ "" } + { + b "nothing" = + 'skip$ + { "\b" temp.str * "{" * swap$ * "}" * } + if$ + } + if$ +} + +FUNCTION {space.after.dot} +{'j := + t 'f := + j 't := + s 'j := + "" 'l := + "" 's := + { t empty$ not } + { + t #1 #3 substring$ "{-}" = + { l " {q}. " * 'l := + t #4 global.max$ substring$ 't := + } + 'skip$ + if$ + + t #1 #1 substring$ 's := + l s * 'l := + s "." = + { + t #2 #1 substring$ " " = + 'skip$ + { + l " " * 'l := + t #2 #4 substring$ "{\,}" = + { t #5 global.max$ substring$ 't := } + 'skip$ + if$ + } + if$ + } + 'skip$ + if$ + t #2 global.max$ substring$ 't := + } + while$ + f 't := + j 's := + l +} + +FUNCTION {fix.inits}{ + 't := + "" 'element := + { t empty$ not } + { + t #1 #3 substring$ ".q." = + { element ".-" * 'element := + t #3 global.max$ substring$ 't := + } + {element t #1 #1 substring$ * 'element :=} + if$ + + t #2 global.max$ substring$ 't := + } + while$ + element +} + +FUNCTION {fix.snm}{ + 't := + "" 'element := + { t empty$ not } + { + t #1 #3 substring$ "{-}" = + {element "-" * 'element := + t #3 global.max$ substring$ 't := + } + {element t #1 #1 substring$ * 'element :=} + if$ + + t #2 global.max$ substring$ 't := + } + while$ + element +} + +FUNCTION {enbrace.dash}{ + 't := + "" 'element := + { t empty$ not } + { + t #1 #1 substring$ "-" = + {element "{-}" * 'element :=} + {element t #1 #1 substring$ * 'element :=} + if$ + t #2 global.max$ substring$ 't := + } + while$ + element +} + +FUNCTION {fix.name}{ + + enbrace.dash 's := + "" 'l := + "" 't := + + #1 'nameptr := + s num.names$ 'numnames := + numnames 'namesleft := + { namesleft #0 > } + { + s nameptr "{vv~}{ll}{, jj}" format.name$ + s nameptr "{, ff}" format.name$ space.after.dot * 'l := + #1 nameptr = + {l 't :=} + {t " and " * l * 't := } + if$ + nameptr #1 + 'nameptr := + namesleft #1 - 'namesleft := + } + while$ + t +} + +FUNCTION {name.separator}{ + namesleft #1 > + {", " * } + 'skip$ + if$ +} + +FUNCTION {format.author.editor} +{ 'b := + + bother #1 = + b "nothing" = + or + 'skip$ + {"b" b * 'b :=} + if$ + + b "editor" = + b "beditor" = + b "nothing" = + or or + {editor 's :=} + {author 's :=} + if$ + + %% modifying name + s fix.name 's := + + "" 't := + + #1 'nameptr := + s num.names$ 'numnames := + numnames 'namesleft := + + s numnames "{ll}" format.name$ 'l := + l "others" = + l "{others}" = + l "et al." = + l "{et al.}" = + or or or + {#1 'tmp :=} + {#0 'tmp :=} + if$ + + { namesleft #0 > } + { s nameptr "{vv}" format.name$ "particle" mk.tag 'v := + s nameptr "{ll}" format.name$ fix.snm "snm" mk.tag 'l := + s nameptr "{f{.}.}" format.name$ fix.inits "inits" mk.tag 'f := + s nameptr "{jj}" format.name$ "suffix" mk.tag 'j := + + + namesleft #1 = + tmp #1 = + and + { b "bauthor" = + b "beditor" = + or + {"et al."} + {"\betal"} + if$ + #1 'tmp := + } + { + b "bauthor" = + b "beditor" = + or + {"\oauthor{"} + { + b "nothing" = + {""} + {"\b" b * "{" *} + if$ + } +%% if$ +%% +%% v empty$ +%% 'skip$ +%% {v * " " *} + if$ + + l empty$ + 'skip$ + { l *} + if$ + + f empty$ + 'skip$ + {", " * f *} + if$ + + j empty$ + 'skip$ + {" " * j *} + if$ + + b "nothing" = + {""} + {"}"} + if$ + + * "" 't := + } + if$ + + name.separator + write$ + + namesleft #1 > + b "nothing" = not + and + { namesleft #2 = + tmp #1 = + and + 'skip$ + 'newline$ + if$ + } + 'skip$ + if$ + + nameptr #1 + 'nameptr := + namesleft #1 - 'namesleft := + } + while$ +} + +FUNCTION {format.editors} +{ editor empty$ + 'skip$ + { + bother #0 = + { author empty$ + {"editor"} + {"nothing"} + if$ + } + {"editor"} + if$ + format.author.editor + editor num.names$ #1 > + { " (eds.)" } + { " (ed.)" } + if$ + write$ + } + if$ +} + +FUNCTION {format.authors} +{ author empty$ + 'skip$ + {"author" format.author.editor} + if$ +} + +FUNCTION {cite.author.editor} +{ 's := + s #1 "{vv~}{ll}" format.name$ + s num.names$ duplicate$ + #2 > + { pop$ " et~al." * } + { #2 = + { s #2 "{vv~}{ll}{ jj}{ f}" format.name$ "others" = + { " et~al." * } + { " and " * s #2 "{vv~}{ll}" format.name$ * } + if$ + } + 'skip$ + if$ + } + if$ +} + +FUNCTION {check.auth.edit.org} +{author empty$ + { + editor empty$ + { + organization empty$ + {""} + {organization} + if$ + } + {editor cite.author.editor} + if$ + } + {author cite.author.editor} + if$ +} + +FUNCTION {check.year} +{ year empty$ + {""} + {year extra.label *} + if$ +} + +INTEGERS { multiresult char.num k int} +INTEGERS {str.length count return save.num1 save.num2} +FUNCTION {is.in.list}{ + 'f := + %%%% saveing "s" and "t" + s 'j := + f 's := + t 'f := + list.string text.length$ 'str.length := + list.string 't := +% s text.length$ 'slen := + int 'save.num1 := + count 'save.num2 := + #1 'int := + #1 'count := + #0 'return := + + { count str.length = not + #0 str.length = not + and + } + { + count #1 + 'count := + t int #1 substring$ "," = + { + t #1 int substring$ s "," * = + { + #1 'return := + str.length 'count := + } + 'skip$ + if$ + + int #1 + 'int := + t int global.max$ substring$ 't := + #0 'int := + } + 'skip$ + if$ + int #1 + 'int := + } + while$ + + save.num1 'int := + save.num2 'count := + + #0 return = + { s t = + {#1 'return :=} + 'skip$ + if$ + } + 'skip$ + if$ + %%%% returning original "s" and "t" + j 's := + f 't := + + return +} + +INTEGERS {bibitem.count} + +FUNCTION {print.count} +{ bibitem.count #1 + 'bibitem.count := + newline$ + "%%% " + bibitem.count int.to.str$ * write$ +} + + +FUNCTION {output.bibitem} +{ print.count + newline$ + "\bibitem[\protect\citeauthoryear{" write$ + check.auth.edit.org write$ + "}{" write$ + check.year write$ + "}]{" write$ + cite$ write$ + "}" write$ + newline$ + "" before.all 'output.state := +} + + + + +FUNCTION {string.to.integer} +{ 't := + t text.length$ 'k := + #1 'char.num := + { t char.num #1 substring$ 's := + s is.num + s "." = + or + char.num k = not + and + } + { char.num #1 + 'char.num := } + while$ + char.num #1 - 'char.num := + t #1 char.num substring$ +} + + +FUNCTION {find.integer} +{ 't := + #0 'int := + { int not + t empty$ not + and + } + { t #1 #1 substring$ 's := + s is.num + {#1 'int :=} + { t #2 global.max$ substring$ 't := } + if$ + } + while$ + int +} + +function{title.lowerwords}{ +"a,an,and,of,the,for,in,to,over,from,on,or,so,than,that,this,as,but,with,by,at,down,up,upon,al,ale,aus,aux,d'Analyse,d'Analystes,d'Architecture,d'Etudes,d'Histoire,da,dans,de,degli,dei,del," +"dell',dell'Accademia,dell'Istituto,dell'Universita,della,delle,dem,der,des,detta,di,die,din,dlia,do,du,e,eXpress,ed,ego,el,em,en,et,fur,i,iz,l'Academie,l'Age,l'Antiquite," * +"l'Approximation,l'Ecole,l'Histoire,l'I.S.U.P.,l'INSA,l'IREM,l'Indirizzo,l'Institut,l'Institute,l'UFR,l'Union,l'Universite,la,las,les,na,nella,per,po,si,sue,sur,ta,tes,und,van,voor,zu,zum,zur" * +} + +FUNCTION {upercase.first.letters}{ + 't := + "" 's := + #1 'int := + #1 'count := + list.string 'v := + "" 'b := + title.lowerwords 'list.string := + + t text.length$ 'slen := + + {count slen = not } + {t int #1 substring$ " " = + { + int #1 - 'int := + t #1 int substring$ 'b := + + % if word not in title.lowerwords - uppercase first letter + b is.in.list not + { b "l" change.case$ b = + { b "u" change.case$ "t" change.case$ 'b := } + 'skip$ + if$ + } + 'skip$ + if$ + + int #1 + 'int := + + s b " " * * 's := + int #1 + 'int := + t int global.max$ substring$ 't := + #0 'int := + } + 'skip$ + if$ + int #1 + 'int := + count #1 + 'count := +% "count=" count int.to.str$ * " slen=" * slen int.to.str$ * top$ + } + while$ + v 'list.string := + % last word is "t" and need to check it too + s t + t "l" change.case$ t = + { "u" change.case$ "t" change.case$ } + 'skip$ + if$ + * +} + + +FUNCTION {format.title} +{ title empty$ + { "" } + { title + "article" type$ = + type$ "techreport" = + type$ "inbook" = + type$ "inproceedings" = + type$ "incollection" = + type$ "phdthesis" = + type$ "mastersthesis" = + or or or or or or + {"t" change.case$} + { type$ "unpublished" = + type$ "misc" = + or + 'skip$ + 'upercase.first.letters + if$ + } + if$ + } + if$ +} + + +FUNCTION {note.presented} +{ note #1 #9 substring$ "presented" = + note #1 #9 substring$ "Presented" = + or +} + +FUNCTION {n.filter} +{ 't := + "" + { t empty$ not } + { t #1 #1 substring$ "," = + t #1 #1 substring$ "\" = + t #1 #1 substring$ "~" = + or or + { "" * + t #2 global.max$ substring$ 't := + } + { t #1 #1 substring$ * + t #2 global.max$ substring$ 't := + } + if$ + } + while$ +} + +FUNCTION {byear} +{ duplicate$ empty$ + { pop$ "" } + { 't := + t text.length$ 'sk := + #5 sk = + { t #1 #4 substring$ 's := + t #5 #1 substring$ 'longest.label := + longest.label is.num not + {s "year" make.tag + "nameyear" is.in.list + {longest.label * } + 'skip$ + if$ + } + {t "year" make.tag } + if$ + } + { t "year" make.tag + "nameyear" is.in.list + {extra.label *} + 'skip$ + if$ + } + if$ + } + if$ +} + +FUNCTION {format.date} +{ year empty$ + { "" } + { year byear } + if$ +} + +FUNCTION {parens} +{ "(" swap$ * ")" * } + +FUNCTION {format.date.parens} +{ year empty$ + { "" } + { year byear parens } + if$ +} + +FUNCTION {noparens} +{ " " swap$ * "" * } + +FUNCTION {format.softmiscdate} +{ year empty$ + { "" } + { year byear parens } + if$ +} + +FUNCTION {format.month}{ + month empty$ + {""} + {month sort.format.month "confdate" make.tag} + if$ +} + +FUNCTION {formatpatent.date} +{ year empty$ + 'skip$ + { month empty$ + { year } + {format.month " " * year *} + if$ + } + if$ +} + +FUNCTION {month.year.date} +{ year empty$ + {""} + { month empty$ + {year byear} + { format.month " " * year byear * } + if$ + type$ "inproceedings" = + 'skip$ + {"(" swap$ * ")" * } + if$ + } + if$ +} + +FUNCTION {tie.or.space.connect} +{ duplicate$ text.length$ #3 < + { "~" } + { " " } + if$ + swap$ * * +} +FUNCTION {format.volume} +{ volume empty$ + { "book" type$ = + {number empty$ + {""} + {"vol. " number "seriesno" make.tag *} + if$ + } + {""} + if$ + } + {"vol. " volume "seriesno" make.tag *} + if$ +} +FUNCTION {format.volume2} +{ volume empty$ + {""} + {"vol. " volume "seriesno" make.tag *} + if$ +} + +FUNCTION {format.art.vol} +{ + volume empty$ + {""} + {volume n.filter "volume" make.tag} + if$ + number empty$ + 'skip$ + { "(" number "issue" make.tag * ")" * * } + if$ +} + +FUNCTION {format.series} +{ series empty$ + 'skip$ + {series "sertitle" make.tag} + if$ +} + +FUNCTION {format.edition} +{ edition empty$ + { "" } + { "" 'v := + "" 'l := + "" 'f := + edition "l" change.case$ 's := + "1" s = + "first" s = + or + { + "1" 'v := + "st" 'l := + } + { + "2" s = + "second" s = + or + { + "2" 'v := + "nd" 'l := + } + { + "3" s = + "third" s = + or + { + "3" 'v := + "rd" 'l := + } + { + "4" s = + "fourth" s = + or + { + "4" 'v := + "th" 'l := + } + { + "5" s = + "fifth" s = + or + { + "5" 'v := + "th" 'l := + } + { + "6" s = + "sixth" s = + or + { + "6" 'v := + "th" 'l := + } + { + "7" s = + "seventh" s = + or + { + "7" 'v := + "th" 'l := + } + { + "8" s = + "eighth" s = + or + { + "8" 'v := + "th" 'l := + } + { + "9" s = + "nineth" s = + or + { + "9" 'v := + "th" 'l := + } + { + edition "t" change.case$ 'f := + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + } + if$ + #0 bother = + { f "" = + { v l * 'f :=} + 'skip$ + if$ + } + { f "" = + { "\bedition{" v * "}" * l * 'f :=} + { "\bedition{" f * "}" * 'f :=} + if$ + } + if$ + f " edn." * + } + if$ +} +FUNCTION {format.isbn} +{ isbn empty$ + { "" } + { isbn "isbn" make.tag} + if$ +} + +INTEGERS {default.info} + + +FUNCTION {multi.page.check} +{ 't := + #0 'multiresult := + "" 'l := + + {t empty$ not} + { t #1 #1 substring$ 's := + + s is.num not + { "" l = not + {t find.integer + {#1 'multiresult := } + {#0 'multiresult := } + if$ + "" 't := + } + { + t #2 global.max$ substring$ 't := + } + if$ + } + { l s * 'l := + t #2 global.max$ substring$ 't := + } + if$ + } + while$ + multiresult +} +FUNCTION {clearpage} +{ 't := + "" 's := + "" 'l := + + { t empty$ not } + { + t #1 #1 substring$ 's := + s is.num not + 'skip$ + { l s * 'l := } + if$ + t #2 global.max$ substring$ 't := + } + while$ + l + +} +FUNCTION {do.pages} +{'t := + "" 'j := + "" 'v := + {t empty$ not} + { t #1 #1 substring$ 's := + s is.num not + s "," = not + and + { "" j = + { + t #2 global.max$ substring$ 't := + } + {t find.integer + { t clearpage 'v := } + 'skip$ + if$ + "" 't := + } + if$ + } + { j s * 'j := + t #2 global.max$ substring$ 't := + } + if$ + } + while$ + j clearpage 'j := + j "fpage" make.tag + "cnd" is.in.list + 'skip$ + {"--" * v "lpage" make.tag *} + if$ +} + + +FUNCTION {format.pages} +{ pages empty$ + { "" } + { pages multi.page.check + {type$ "article" = + {""} + {"cnd" is.in.list + {"p. "} + {"pp. "} + if$ + } + if$ + pages do.pages * + } + {type$ "article" = + {""} + {"p. "} + if$ + pages clearpage "fpage" make.tag * + } + + if$ + } + if$ +} + +FUNCTION {replace.tilde} +{ 't := + "" + { t empty$ not } + { t #1 #1 substring$ "~" = + { { t #1 #1 substring$ "~" = } + { "\texttildelow " * + t #2 global.max$ substring$ 't := + } + while$ + } + { t #1 #1 substring$ * + t #2 global.max$ substring$ 't := + } + if$ + } + while$ +} + + +FUNCTION {format.url} +{ url empty$ + 'skip$ + { type$ "article" = + 'skip$ + { #0 bother = + { "\url{" } + { "\burl{" } + if$ + url replace.tilde * "}" * + output + } + if$ + + urldate empty$ + 'skip$ + { "Accessed " urldate * output } + if$ + } + if$ +} + + +FUNCTION {publisher.month.pages}{ + publisher empty$ series empty$ and + { address empty$ + 'skip$ + 'new.sentence + if$ + format.pub.address + + pages empty$ + 'skip$ + {insert.comma} + if$ + format.pages output + + } + { + pages empty$ + 'skip$ + {insert.comma} + if$ + format.pages output + publisher empty$ + 'skip$ + {new.sentence} + if$ + format.pub.address + } + if$ +} + +function{process.doi}{ + doi 't := + "" 'b := + #1 'int := +% "doi =" t * top$ + + t text.length$ 'slen := + + {int slen = not } + {t int #3 substring$ "10." = + { + t int #1 - #1 substring$ 'b := + b "" = + {"a" 'b :=} % if b is empty need to set a letter + 'skip$ + if$ + + b is.num not + { + t int slen int - #1 + substring$ 't := + slen #1 - 'int := + } + 'skip$ + if$ + + } + 'skip$ + if$ + int #1 + 'int := + } + while$ + t +} + +FUNCTION {format.doi} +{ doi empty$ + {""} + { + "nodoi" is.in.list + {""} + %%{"doi:\doiurl{" process.doi * "}" * } + {"\doiurl{" process.doi * "} " * } + if$ + } + if$ +} + +FUNCTION {format.in.ed.booktitle} +{ booktitle empty$ + {#1 bother = + "cnd" is.in.list not + and + { editor empty$ + 'skip$ + { "In: " output write$ format.editors } + if$ + } + 'skip$ + if$ + } + { editor empty$ + { "In: " booktitle upercase.first.letters "btitle" make.tag * output} + { "In: " output write$ format.editors "" %%% pushing empty string to the empty stack + booktitle upercase.first.letters "btitle" make.tag output + } + if$ + } + + if$ +} + +FUNCTION {format.in.ed} +{ title empty$ + 'skip$ + { editor empty$ + { title "btitle" make.tag output} + { author empty$ + { format.editors + stupid.colon + %format.date output + title "btitle" make.tag output + } + { "In: " output write$ format.editors "" %%% pushing empty string to the empty stack + title "btitle" make.tag output + } + if$ + } + if$ + } + if$ +} + +FUNCTION {format.tr.number} +{ type empty$ + { "Technical Report" } + 'type + if$ + number empty$ + { "t" change.case$ } + { number tie.or.space.connect } + if$ +} + +FUNCTION {patent.number} +{ number empty$ + 'skip$ + { number } + if$ +} +INTEGERS { len } + +FUNCTION {chop.word} +{ 's := + 'len := + s #1 len substring$ = + { s len #1 + global.max$ substring$ } + 's + if$ +} + +FUNCTION {format.inpres} +{ "l" change.case$ 't := + "in press: " #10 + "in press. " #10 + "in press " #9 t chop.word + chop.word + chop.word + #1 global.max$ substring$ +} + +FUNCTION {bcomment.note} +{ note empty$ + 'skip$ + {note format.inpres "comment" make.tag output} + if$ +} + +FUNCTION {empty.misc.check} +{ author empty$ title empty$ howpublished empty$ + month empty$ year empty$ note empty$ + and and and and and + { "all relevant fields are empty in " cite$ * warning$ } + 'skip$ + if$ +} + +FUNCTION {format.thesis.type} +{ type empty$ + 'skip$ + { pop$ + type "t" change.case$ + } + if$ +} + +FUNCTION {format.chapter.and.note} +{ note empty$ chapter empty$ organization empty$ and and + 'skip$ + { chapter empty$ + "notnumber" last.label = + or + {organization empty$ + { note "comment" make.tag output } + { note empty$ + { organization "comment" make.tag output } + { organization ". " * note * "comment" make.tag output } + if$ + } + if$ + } + { note empty$ + { "Chap. " chapter * "comment" make.tag output} + { type empty$ + { "Chap. " } + { type "t" change.case$ "Section" = + { "Sect. " } + { "Chap. " } + if$ + } + if$ + chapter * ". " * note * "comment" make.tag output + } + if$ + } + if$ + } + if$ +} + +FUNCTION {item.end} +{ chapter empty$ + type$ "unpublished" = not + type$ "misc" = not + and and + { new.sentence + format.doi output + } + 'skip$ + if$ + + type$ "unpublished" = + type$ "misc" = + or + { note empty$ + 'skip$ + {note.presented + 'skip$ + {new.sentence note output} + if$ + } + if$ + format.date.parens output + } + { new.sentence + type$ "proceedings" = + { author empty$ editor empty$ and + 'bcomment.note + 'format.chapter.and.note + if$ + } + 'format.chapter.and.note + if$ + } + if$ + list.string 'v := + default.list 'list.string := + + type$ ".isbn" * is.in.list + "cnd" is.in.list + or + { + new.sentence +% format.isbn output + } + 'skip$ + if$ + new.sentence + %% commented by SPi as we are using format.eprint %% + %% and also to avoide eprint being printed twice - Start %% + %%eprint empty$ + %% 'skip$ + %% {"\arxivurl{" eprint * "}" * output} + %%if$ + %% End %% + chapter empty$ + type$ "unpublished" = not + type$ "misc" = not + and and + 'skip$ + { new.sentence + format.doi output + } + if$ + new.sentence + format.url + v 'list.string := + fin.entry +} + +FUNCTION {article.item.end} +{ chapter empty$ + type$ "unpublished" = not + type$ "misc" = not + and and + { new.sentence +% format.doi output + } + 'skip$ + if$ + + type$ "unpublished" = + type$ "misc" = + or + { note empty$ + 'skip$ + {note.presented + 'skip$ + {new.sentence note output} + if$ + } + if$ + format.date.parens output + } + { new.sentence + type$ "proceedings" = + { author empty$ editor empty$ and + 'bcomment.note + 'format.chapter.and.note + if$ + } + 'format.chapter.and.note + if$ + } + if$ + list.string 'v := + default.list 'list.string := + + type$ ".isbn" * is.in.list + "cnd" is.in.list + or + { + new.sentence +% format.isbn output + } + 'skip$ + if$ + new.sentence + %% commented by SPi as we are using format.eprint %% + %% and also to avoide eprint being printed twice - Start %% + %%eprint empty$ + %% 'skip$ + %% {"\arxivurl{" eprint * "}" * output} + %%if$ + %% End %% + chapter empty$ + type$ "unpublished" = not + type$ "misc" = not + and and + 'skip$ + { new.sentence +%% format.doi output + } + if$ + new.sentence + format.url + v 'list.string := + fin.entry +} + + +FUNCTION {insert.element} +{ #0 bother = + { element "{botherref}" * write$ newline$} + { + type$ "article" = + {element "{barticle}" * write$ newline$} + 'skip$ + if$ + type$ "book" = + type$ "proceedings" = + type$ "manual" = + type$ "booklet" = + or or or + {element "{bbook}" * write$ newline$} + 'skip$ + if$ + + type$ "inbook" = + { "notnumber" last.label = + {element "{bchapter}" * write$ newline$} + {element "{bbook}" * write$ newline$} + if$ + } + 'skip$ + if$ + + type$ "incollection" = + type$ "inproceedings" = + type$ "conference" = + or or + {element "{bchapter}" * write$ newline$} + 'skip$ + if$ + } + if$ +} + +FUNCTION {end.element} +{ "\end" 'element := + item.end + insert.element + "\endbibitem" write$ newline$ +} + +FUNCTION {article.end.element} +{ "\end" 'element := + article.item.end + insert.element + "\endbibitem" write$ newline$ +} + + +FUNCTION {begin.element} +{ "\begin" 'element := + insert.element +} +function {set.options}{ + options empty$ + 'skip$ + {options 'list.string :=} + if$ +} + +FUNCTION {settings} +{} + +FUNCTION {article} +{ output.bibitem + author empty$ + institution empty$ + editor empty$ + and and + journal empty$ + or + year empty$ + or + % above tagging rule means: + % nead: (volume & (pages or number) ) or (doi [without volume, pages and number]) + volume empty$ not + pages empty$ not bnumber empty$ not or + and + + volume empty$ pages empty$ bnumber empty$ and and + doi empty$ not and + or + not + or + {#0 'bother :=} + {#1 'bother :=} + if$ + begin.element + author empty$ + { editor empty$ + 'skip$ + {format.editors stupid.colon} + if$ + } + { format.authors stupid.colon} + if$ + "cnd" is.in.list + { + journal empty$ + {format.title "atitle" make.tag "title" output.check} + {journal "jtitle" make.tag output} + if$ + } + { + format.title "atitle" make.tag "title" output.check + journal empty$ + 'skip$ + {new.sentence journal "jtitle" make.tag output} + if$ + } + if$ + format.art.vol output + pages empty$ + 'skip$ + {insert.comma} + if$ + format.pages output + format.date.parens output + format.doi output + format.eprint output + format.primaryClass output + article.end.element +} + + +FUNCTION {patent} +{ output.bibitem + #0 'bother := + begin.element + author empty$ + 'skip$ + {format.authors stupid.colon} + if$ + format.title "title" output.check + add.period$ + patent.number output + insert.comma + formatpatent.date output + end.element +} + +FUNCTION { other } { patent } + +FUNCTION {book} +{ output.bibitem + author empty$ + institution empty$ + organization empty$ + editor empty$ + and and and + title empty$ + year empty$ + or or + {#0 'bother :=} + { + publisher empty$ address empty$ not and + {#0 'bother :=} + {#1 'bother :=} + if$ + } + if$ + begin.element + author empty$ + { editor empty$ + 'skip$ + {format.editors stupid.colon} + if$ + } + { format.authors stupid.colon} + if$ + format.title "btitle" make.tag "title" output.check + series empty$ + { + format.volume output + insert.comma + format.edition output + } + { edition empty$ + 'skip$ + 'insert.comma + if$ + format.edition output + new.sentence + format.series output + insert.comma + format.volume output + } + if$ + publisher.month.pages + format.date.parens output + end.element +} + +FUNCTION {booklet} +{output.bibitem + author empty$ + title empty$ + year empty$ + howpublished empty$ + or or or + {#0 'bother :=} + {#1 'bother :=} + if$ + + begin.element + author empty$ + 'skip$ + {format.authors stupid.colon} + if$ + format.title "btitle" make.tag "title" output.check + address empty$ publisher empty$ howpublished empty$ and and + 'skip$ + 'new.sentence + if$ + format.pub.address + format.date.parens output + end.element +} + +FUNCTION {misc} +{output.bibitem + #0 'bother := + begin.element + author empty$ + 'skip$ + {format.authors stupid.colon} + if$ + format.title "btitle" make.tag "title" output.check + address empty$ publisher empty$ howpublished empty$ and and + 'skip$ + 'new.sentence + if$ + format.pub.address + end.element +} + +FUNCTION {softmisc} +{output.bibitem + #0 'bother := + begin.element + author empty$ + 'skip$ + {format.authors} + if$ + stupid.colon + format.title "btitle" make.tag "title" output.check + insert.comma + version output + insert.comma + %%address empty$ publisher empty$ howpublished empty$ and and + %%'skip$ + %% 'new.sentence + %%if$ + format.pub.address + format.softmiscdate output + insert.comma + format.softmisc.eprint output + end.element +} + +FUNCTION {inbook} +{ output.bibitem + author empty$ + institution empty$ + organization empty$ + editor empty$ + and and and + title empty$ + year empty$ + or or + {#0 'bother :=} + { + publisher empty$ address empty$ not and + {#0 'bother :=} + {#1 'bother :=} + if$ + } + if$ + + chapter empty$ + { "" 'last.label :=} + { chapter string.to.integer empty$ author empty$ not and + { "notnumber" 'last.label :=} + { "" 'last.label :=} + if$ + } + if$ + + begin.element + author empty$ + 'skip$ + {format.authors stupid.colon} + if$ + "notnumber" last.label = + { chapter "ctitle" make.tag output + add.period$ + } + 'skip$ + if$ + format.in.ed + series empty$ + { + insert.comma + format.volume output + insert.comma + format.edition output + new.sentence + } + { + insert.comma + format.edition output + new.sentence + format.series output + volume empty$ + 'skip$ + 'insert.comma + if$ + format.volume output + } + if$ + publisher.month.pages + publisher empty$ address empty$ edition empty$ series empty$ pages empty$ volume empty$ and and and and and + 'insert.comma + 'skip$ + if$ + format.date.parens output + end.element +} +FUNCTION {incollection} +{ output.bibitem + author empty$ + institution empty$ + and + booktitle empty$ + title empty$ + year empty$ + or or or + {#0 'bother :=} + { + publisher empty$ address empty$ not and + {#0 'bother :=} + {#1 'bother :=} + if$ + } + if$ + begin.element + author empty$ + 'skip$ + {format.authors stupid.colon} + if$ + + "cnd" is.in.list + { + booktitle empty$ title empty$ not and + { + format.title "ctitle" make.tag "title" output.check + new.sentence + } + 'skip$ + if$ + } + { + format.title "ctitle" make.tag "title" output.check + title empty$ + 'skip$ + {new.sentence} + if$ + } + if$ + format.in.ed.booktitle + series empty$ + { + format.volume output + insert.comma + format.edition output + } + { + edition empty$ + 'skip$ + { insert.comma + format.edition output + } + if$ + new.sentence + format.series output + insert.comma + format.volume output + } + if$ + publisher.month.pages + format.date.parens output + end.element +} + +FUNCTION {inproceedings} +{ output.bibitem + author empty$ + institution empty$ + and + title empty$ + year empty$ + or or + {#0 'bother :=} + {#1 'bother :=} + if$ + begin.element + author empty$ + 'skip$ + {format.authors stupid.colon} + if$ + + "cnd" is.in.list + { + booktitle empty$ title empty$ not and + { + format.title "ctitle" make.tag "title" output.check + new.sentence + } + 'skip$ + if$ + } + { + format.title "ctitle" make.tag "title" output.check + title empty$ booktitle empty$ not and + 'skip$ + {new.sentence} + if$ + } + if$ + + format.in.ed.booktitle + series empty$ + 'skip$ + {new.sentence format.series output} + if$ + volume empty$ address empty$ publisher empty$ and and + 'skip$ + 'insert.comma + if$ + format.volume output + publisher.month.pages + format.date.parens output + end.element +} + +FUNCTION {conference} { inproceedings } + +FUNCTION {manual} +{ output.bibitem + author empty$ + organization empty$ + title empty$ + year empty$ + address empty$ + or or or or + {#0 'bother :=} + {#1 'bother :=} + if$ + begin.element + + author empty$ + { organization empty$ + 'skip$ + { organization "publisher" make.tag output.nonnull + stupid.colon% add.period$ + } + if$ + } + { format.authors stupid.colon} + if$ + title empty$ + 'skip$ + {format.title "btitle" make.tag output} + if$ + edition empty$ + {new.sentence} + {insert.comma} + if$ + format.edition output + edition empty$ + 'skip$ + {new.sentence} + if$ + author empty$ organization empty$ + or + 'skip$ + { organization "publisher" make.tag output.nonnull + insert.comma + } + if$ + address empty$ + 'skip$ + {address "location" make.tag output} + if$ + format.date.parens output + end.element +} + + +FUNCTION {phdthesis} +{output.bibitem + #0 'bother := + begin.element + author empty$ + 'skip$ + {format.authors stupid.colon} + if$ + format.title "title" output.check + new.sentence + type$ "mastersthesis" = + {"Master's thesis" format.thesis.type output.nonnull} + {"PhD thesis" format.thesis.type output.nonnull} + if$ + school empty$ + 'skip$ + 'insert.comma + if$ + school "school" output.check + address empty$ + 'skip$ + 'insert.comma + if$ + address output + month.year.date output + end.element +} +FUNCTION {mastersthesis}{phdthesis} + + +FUNCTION {proceedings} +{ output.bibitem + author empty$ + institution empty$ + organization empty$ + editor empty$ + and and and + title empty$ + year empty$ + or or + {#0 'bother :=} + { + publisher empty$ address empty$ not and + {#0 'bother :=} + {#1 'bother :=} + if$ + } + if$ + + begin.element + author empty$ + { editor empty$ + {organization "institutionaled" make.tag "organization" output.check } + { format.editors } + if$ + } + { format.authors } + if$ + stupid.colon + format.title "btitle" make.tag output + series empty$ + 'skip$ + {new.sentence format.series output} + if$ + volume empty$ + 'skip$ + 'insert.comma + if$ + format.volume output + publisher.month.pages + format.date.parens output + end.element +} + +FUNCTION {techreport} +{ output.bibitem + #0 'bother := + begin.element + author empty$ + 'skip$ + {format.authors stupid.colon} + if$ + format.title "title" output.check + new.sentence + format.tr.number output.nonnull + institution empty$ + 'skip$ + 'insert.comma + if$ + institution "institution" output.check + address empty$ + 'skip$ + 'insert.comma + if$ + address output + month.year.date output + end.element +} + +FUNCTION {unpublished} +{ output.bibitem + #0 'bother := + + begin.element + author empty$ + 'skip$ + {format.authors stupid.colon} + if$ + format.title "title" output.check + note empty$ + 'skip$ + { note.presented + {note output} + 'skip$ + if$ + } + if$ + end.element +} + +FUNCTION {default.type} { unpublished } + +MACRO {jan} {"January"} +MACRO {feb} {"February"} +MACRO {mar} {"March"} +MACRO {apr} {"April"} +MACRO {may} {"May"} +MACRO {jun} {"June"} +MACRO {jul} {"July"} +MACRO {aug} {"August"} +MACRO {sep} {"September"} +MACRO {oct} {"October"} +MACRO {nov} {"November"} +MACRO {dec} {"December"} + +READ + +FUNCTION {sortify} +{ purify$ + "l" change.case$ +} + +INTEGERS { et.al.char.used } + +FUNCTION {initialize.et.al.char.used} +{ #0 'et.al.char.used := +} + +%%%%% setting default options +FUNCTION {set.default.opt} +{"unsort" 'list.string :=} + +EXECUTE {set.default.opt} + +FUNCTION {assign.opt}{ + % First need to set options + "settings" type$ = + { options empty$ + 'skip$ + {options 'list.string :=} + if$ + } + 'skip$ + if$ +} + +ITERATE {assign.opt} +EXECUTE {initialize.et.al.char.used} + +FUNCTION {alpha.format.lab.names} +{ 's := + s num.names$ 'numnames := + numnames #1 > + { numnames #4 > + { #3 'namesleft := } + { numnames 'namesleft := } + if$ + #1 'nameptr := + "" + { namesleft #0 > } + { nameptr numnames = + { s nameptr "{ff }{vv }{ll}{ jj}" format.name$ "others" = + { "+" * + #1 'et.al.char.used := + } + { s nameptr "{v{}}{l{}}" format.name$ * } + if$ + } + { s nameptr "{v{}}{l{}}" format.name$ * } + if$ + nameptr #1 + 'nameptr := + namesleft #1 - 'namesleft := + } + while$ + numnames #4 > + { "+" * + #1 'et.al.char.used := + } + 'skip$ + if$ + } + { s #1 "{v{}}{l{}}" format.name$ + duplicate$ text.length$ #2 < + { pop$ s #1 "{ll}" format.name$ #3 text.prefix$ } + 'skip$ + if$ + } + if$ +} + +FUNCTION {standard.format.lab.names} +{ 's := + s #1 "{vv~}{ll}" format.name$ + s num.names$ duplicate$ + #2 > + { pop$ " et~al." * } + { #2 < + 'skip$ + { s #2 "{ff }{vv }{ll}{ jj}" format.name$ "others" = + { " et~al." * } + { " and " * s #2 "{vv~}{ll}" format.name$ * } + if$ + } + if$ + } + if$ +} +FUNCTION {format.lab.names}{ + "alpha" is.in.list + 'alpha.format.lab.names + 'standard.format.lab.names + if$ +} + +FUNCTION {author.key.label} +{ author empty$ + { key empty$ + { cite$ #1 #3 substring$ } + { key #3 text.prefix$ } + if$ + } + { author format.lab.names } + if$ +} + +FUNCTION {author.editor.key.label} +{ author empty$ + { editor empty$ + { key empty$ + { "zzz" } + { key #3 text.prefix$ } + if$ + } + { editor format.lab.names } + if$ + } + { author format.lab.names } + if$ +} + +FUNCTION {author.key.organization.label} +{ author empty$ + { key empty$ + { organization empty$ + { "zzz" } + { "The " #4 organization chop.word #3 text.prefix$ } + if$ + } + { key #3 text.prefix$ } + if$ + } + { author format.lab.names } + if$ +} + +FUNCTION {editor.key.organization.label} +{ editor empty$ + { key empty$ + { organization empty$ + { "zzz" } + { "The " #4 organization chop.word #3 text.prefix$ } + if$ + } + { key #3 text.prefix$ } + if$ + } + { editor format.lab.names } + if$ +} + +FUNCTION {calc.short.authors} +{ type$ "book" = + type$ "inbook" = + or + 'author.editor.key.label + { type$ "proceedings" = + 'editor.key.organization.label + { type$ "manual" = + 'author.key.organization.label + 'author.key.label + if$ + } + if$ + } + if$ + 'short.list := +} + +FUNCTION {calc.label} +{ calc.short.authors + short.list + + "alpha" is.in.list + { + duplicate$ + year field.or.null purify$ #-1 #2 substring$ + * + 'label := + year field.or.null purify$ #-1 #4 substring$ + * + sortify 'sort.label := + } + { + "(" + * + year duplicate$ empty$ + short.list key field.or.null = or + { pop$ "" } + 'skip$ + if$ + * + 'label := + label 'sort.label := + } + if$ +} + +FUNCTION {sort.format.names} +{ 's := + #1 'nameptr := + "" + s num.names$ 'numnames := + numnames 'namesleft := + { namesleft #0 > } + { nameptr #1 > + { " " * + "alpha" is.in.list + 'skip$ + {numnames int.to.str$ * " " *} + if$ + } + 'skip$ + if$ + s nameptr "{vv{ } }{ll{ }}{ ff{ }}{ jj{ }}" format.name$ 't := + nameptr numnames = + t "others" = + and + { "et al" * } + { t sortify * } + if$ + #3 numnames < + "alpha" is.in.list not + and + {#0 'namesleft := + " zzz " * + } + { + nameptr #1 + 'nameptr := + namesleft #1 - 'namesleft := + } + if$ + } + while$ +} + +FUNCTION {sort.format.title} +{ 't := + "A " #2 + "An " #3 + "The " #4 t chop.word + chop.word + chop.word + sortify + #1 global.max$ substring$ +} + +FUNCTION {author.sort} +{ author empty$ + { key empty$ + { "to sort, need author or key in " cite$ * warning$ + "zzz" + } + { key sortify } + if$ + } + { author sort.format.names } + if$ +} + +FUNCTION {author.editor.sort} +{ author empty$ + { editor empty$ + { key empty$ + { "to sort, need author, editor, or key in " cite$ * warning$ + "z" + } + { key sortify } + if$ + } + { editor sort.format.names } + if$ + } + { author sort.format.names } + if$ +} + +FUNCTION {author.organization.sort} +{ author empty$ + { organization empty$ + { key empty$ + { "to sort, need author, organization, or key in " cite$ * warning$ + "z" + } + { key sortify } + if$ + } + { "The " #4 organization chop.word sortify } + if$ + } + { author sort.format.names } + if$ +} + +FUNCTION {editor.organization.sort} +{ editor empty$ + { organization empty$ + { key empty$ + { "to sort, need editor, organization, or key in " cite$ * warning$ + "z" + } + { key sortify } + if$ + } + { "The " #4 organization chop.word sortify } + if$ + } + { editor sort.format.names } + if$ +} + +FUNCTION {presort} +{ calc.label + sort.label sortify + " " + * + type$ "book" = + type$ "inbook" = + or + {author empty$ + 'editor.organization.sort + 'author.organization.sort + if$ + } + { type$ "proceedings" = + type$ "incollection" = + or + {author empty$ + 'editor.organization.sort + 'author.organization.sort + if$ + } + { type$ "manual" = + 'author.organization.sort + 'author.sort + if$ + } + if$ + } + if$ + " " + * + year field.or.null sortify + * + " " + * + title field.or.null + sort.format.title + * + #1 entry.max$ substring$ 'sort.label := + sort.label * + #1 entry.max$ substring$ 'sort.key$ := + + "settings" type$ = + {"aaa"} + {"unsort" is.in.list + {"bb"} + {"alpha" is.in.list + {sort.key$} + {sort.label} + if$ + } + if$ + } + if$ + 'sort.key$ := +} + + +ITERATE {presort} + +SORT + +INTEGERS { longest.label.width last.extra.num number.label } + +FUNCTION {initialize.longest.label} +{ "" 'longest.label := + #0 int.to.chr$ 'last.label := + "" 'j := + #0 'longest.label.width := + #0 'last.extra.num := + #0 'number.label := +} + +FUNCTION {forward.pass} +{ last.label label = + { last.extra.num #1 + 'last.extra.num := + last.extra.num int.to.chr$ 'extra.label := + } + { "a" chr.to.int$ 'last.extra.num := + "" 'extra.label := + label 'last.label := + } + if$ + number.label #1 + 'number.label := +} + +FUNCTION {reverse.pass} +{ j "b" = + { "a" 'extra.label := } + 'skip$ + if$ + extra.label 'j := + label extra.label * 'label := +} + +EXECUTE {initialize.longest.label} + +ITERATE {forward.pass} + +REVERSE {reverse.pass} + +FUNCTION {write.preambule} +{ "%% BioMed_Central_Bib_Style_v1.01" write$ newline$ newline$ + "\begin{thebibliography}{" number.label int.to.str$ * "}" * write$ newline$ + "% BibTex style file: bmc-mathphys.bst (version 2.1), 2014-07-24" write$ newline$ + "\ifx \bisbn \undefined \def \bisbn #1{ISBN #1}\fi" write$ newline$ + "\ifx \binits \undefined \def \binits#1{#1}\fi" write$ newline$ + "\ifx \bauthor \undefined \def \bauthor#1{#1}\fi" write$ newline$ + "\ifx \batitle \undefined \def \batitle#1{#1}\fi" write$ newline$ + "\ifx \bjtitle \undefined \def \bjtitle#1{#1}\fi" write$ newline$ + "\ifx \bvolume \undefined \def \bvolume#1{\textbf{#1}}\fi" write$ newline$ + "\ifx \byear \undefined \def \byear#1{#1}\fi" write$ newline$ + "\ifx \bissue \undefined \def \bissue#1{#1}\fi" write$ newline$ + "\ifx \bfpage \undefined \def \bfpage#1{#1}\fi" write$ newline$ + "\ifx \blpage \undefined \def \blpage #1{#1}\fi" write$ newline$ + "\ifx \burl \undefined \def \burl#1{\textsf{#1}}\fi" write$ newline$ + %%"\ifx \doiurl \undefined \def \doiurl#1{\textsf{#1}}\fi" write$ newline$ + "\ifx \doiurl \undefined \def \doiurl#1{\url{https://doi.org/#1}}\fi" write$ newline$ + "\ifx \betal \undefined \def \betal{\textit{et al.}}\fi" write$ newline$ + "\ifx \binstitute \undefined \def \binstitute#1{#1}\fi" write$ newline$ + "\ifx \binstitutionaled \undefined \def \binstitutionaled#1{#1}\fi" write$ newline$ + "\ifx \bctitle \undefined \def \bctitle#1{#1}\fi" write$ newline$ + "\ifx \beditor \undefined \def \beditor#1{#1}\fi" write$ newline$ + "\ifx \bpublisher \undefined \def \bpublisher#1{#1}\fi" write$ newline$ + "\ifx \bbtitle \undefined \def \bbtitle#1{#1}\fi" write$ newline$ + "\ifx \bedition \undefined \def \bedition#1{#1}\fi" write$ newline$ + "\ifx \bseriesno \undefined \def \bseriesno#1{#1}\fi" write$ newline$ + "\ifx \blocation \undefined \def \blocation#1{#1}\fi" write$ newline$ + "\ifx \bsertitle \undefined \def \bsertitle#1{#1}\fi" write$ newline$ + "\ifx \bsnm \undefined \def \bsnm#1{#1}\fi" write$ newline$ + "\ifx \bsuffix \undefined \def \bsuffix#1{#1}\fi" write$ newline$ + "\ifx \bparticle \undefined \def \bparticle#1{#1}\fi" write$ newline$ + "\ifx \barticle \undefined \def \barticle#1{#1}\fi" write$ newline$ + "\bibcommenthead" write$ newline$ +} + + +FUNCTION {begin.bib} +{ preamble$ empty$ + 'skip$ + { preamble$ write$ newline$ } + if$ + write.preambule + "\ifx \bconfdate \undefined \def \bconfdate #1{#1}\fi" write$ newline$ + "\ifx \botherref \undefined \def \botherref #1{#1}\fi" write$ newline$ + "\ifx \url \undefined \def \url#1{\textsf{#1}}\fi" write$ newline$ + "\ifx \bchapter \undefined \def \bchapter#1{#1}\fi" write$ newline$ + "\ifx \bbook \undefined \def \bbook#1{#1}\fi" write$ newline$ + "\ifx \bcomment \undefined \def \bcomment#1{#1}\fi" write$ newline$ + "\ifx \oauthor \undefined \def \oauthor#1{#1}\fi" write$ newline$ + "\ifx \citeauthoryear \undefined \def \citeauthoryear#1{#1}\fi" write$ newline$ + "\ifx \endbibitem \undefined \def \endbibitem {}\fi" write$ newline$ + "\ifx \bconflocation \undefined \def \bconflocation#1{#1}\fi" write$ newline$ + "\ifx \arxivurl \undefined \def \arxivurl#1{\textsf{#1}}\fi" write$ newline$ + "\csname PreBibitemsHook\endcsname" write$ newline$ +} + +EXECUTE {begin.bib} + +EXECUTE {init.state.consts} + +ITERATE {call.type$} + +FUNCTION {end.bib} +{ newline$ + "\end{thebibliography}" write$ newline$ +} + +EXECUTE {end.bib} + + +%% XML output - done for each entry referenced in the BibTeX database +INTEGERS {i ll li j.int global.counter} +STRINGS {lr lp lt ls } + +FUNCTION {replace} +{ + 'lr := % replace string + 'lp := % pattern + 'lt := % text to search + "" 'ls := % result string + lp text.length$ 'll := % length of the search pattern + { lt empty$ not } + { lt #1 ll substring$ lp = + { ls lr * 'ls := + lt ll #1 + global.max$ substring$ 'lt := } + { ls lt #1 #1 substring$ * 'ls := + lt #2 global.max$ substring$ 'lt := } + if$ + } + while$ + ls +} + +FUNCTION {strip.letters} +{ + "" 's := + duplicate$ missing$ + 'pop$ + { + 't := + { t "" = not } + { % ascii '0' = 48, '9' = 57 + t #1 #1 substring$ chr.to.int$ 'i := + i #47 > i #58 < and + { s t #1 #1 substring$ * 's := } + 'skip$ + if$ + t #2 global.max$ substring$ 't := + } + while$ + } + if$ + s +} +FUNCTION {output.xml} +{ duplicate$ "" = + 'pop$ + { " " swap$ * write$ newline$ } + if$ +} + +%% + % markup.xml + % + % Takes 2 args text & tag {"the text " "tag"} + % Returns 1 string {"the text <\tag>"} +%% +FUNCTION {markup.xml} +{ + "" 'v := % result + 't := % tag + duplicate$ missing$ + 'pop$ + { 'v := } + if$ + v "" = + 'skip$ + { "<" t * ">" * v * "" * 'v := } + if$ + v +} + +%% Takes 2 args - tag, string +FUNCTION{markup.xml.title} +{ pop$ % tag + duplicate$ missing$ + 'pop$ + { + 's := % string + s "\&" "&" replace 's := + s "p" markup.xml 's := + s "title" markup.xml output.xml + } + if$ +} + + +%% + % markup.xml.pages + % + % Takes 1 arg (pages string) + % seperates into and if + % there is a - seperator. else no lpage. + % + % need to remove others +%% +FUNCTION{markup.xml.pages} +{ + "" 'v := % fpage + "" 's := % lpage + duplicate$ missing$ + 'pop$ + { + 't := + t " " "" replace 't := % remove all spaces. pgs must be - seperated + { t empty$ not } + { + t #1 #1 substring$ "-" = + { + t #2 global.max$ substring$ 's := + "" 't := % break while loop + }{ + v t #1 #1 substring$ * 'v := + t #2 global.max$ substring$ 't := + } + if$ + } + while$ + } + if$ + v "fpage" markup.xml output.xml + s "lpage" markup.xml output.xml +} + + +%% + % markup.xml.names + % + % Takes 2 args + % tag, namefield (eg. author "au") + % splits fields into and + % writes info + % returns nothing +%% +FUNCTION {markup.xml.names} +{ + 't := % tag + "" 'v := + "" 's := + duplicate$ empty$ + { pop$ + organization missing$ + { institution "cnm" markup.xml + "au" markup.xml "aug" markup.xml output.xml } + { organization "cnm" markup.xml + "au" markup.xml "aug" markup.xml output.xml } + if$ } + { + " " write$ newline$ + 'temp.str := % names string + temp.str num.names$ 'j.int := % num of names + #1 'i := % init counter + { i #1 j.int + < } % while (i <= j.int) + { + " " write$ + + % Initial first names + % if first name all in capitals + % - assume is initial list of first names. + temp.str i "{ff{ }}" format.name$ + duplicate$ "u" change.case$ = + { temp.str i "{ff{ }}" format.name$ } + { temp.str i "{f{}}" format.name$ } + if$ + + % if last name but no first name use cnm; else snm + duplicate$ "" = + { temp.str i "{ll{ }}" format.name$ % last names space seperated. + "cnm" markup.xml write$ } + { temp.str i "{ll{ }}" format.name$ % last names space seperated. + "snm" markup.xml write$ } + if$ + + "fnm" markup.xml write$ + + "" write$ newline$ + i #1 + 'i := + } + while$ + " " write$ newline$ + } + if$ +} + + +%% + % markup.xml.pub + % + % Takes 4 args (school address publisher tag) + % prints concatenation + % returns nothing +%% +FUNCTION {markup.xml.pub} +{ + 't := % Tag + "" 'v := % Publisher + "" 'l := % Address + "" 'f := % School + "" 's := % Answer + duplicate$ missing$ 'pop$ { 'v := } if$ + duplicate$ missing$ 'pop$ { 'l := } if$ + duplicate$ missing$ 'pop$ { 'f := } if$ + "" f = not % school not empty + { f 's := } % return school as publisher + { % else + "" v = "" l = and % address and pub empty + 'skip$ + { + "" l = + { v 's := } % return pub + { "" v = + { l 's := } % return add + { l ": " * v * 's := } % return add : pub + if$ + } + if$ + } + if$ + } + if$ + s t markup.xml output.xml +} + +%% + % xml.phd + % + % Takes nothing + % Returns type (phd/msc) of empty string +%% +FUNCTION {xml.phd} +{ + "phdthesis" type$ = + "mastersthesis" type$ = or + { "phdthesis" type$ = + { "PhD thesis" } + { "Master's thesis" } + if$ + } + { type } % usually empty + if$ +} + +% markup.xml.edition +% +% edition is a numeric value. ie "2" +% if format 2nd 1st etc.. strip letters. +% +FUNCTION {markup.xml.edition} +{ pop$ pop$ %clear stack + edition strip.letters duplicate$ "" = + { pop$ edition } + 'skip$ + if$ + "edition" markup.xml output.xml +} + + +FUNCTION{begin.bmcxmlcomment}{ + newline$ + "\newcommand{\BMCxmlcomment}[1]{}" write$ newline$ + newline$ + "\BMCxmlcomment{" write$ newline$ + newline$ "" write$ newline$ +} + +FUNCTION{end.bmcxmlcomment}{ + newline$ + "" write$ newline$ + "} % end of \BMCxmlcomment" write$ newline$ +} + +FUNCTION {export.xml}{ + newline$ + global.counter #1 + 'global.counter := + "" * + write$ newline$ +% title "\&" "&" replace "title" markup.xml.title + title "title" markup.xml.title + author "aug" markup.xml.names % org. and inst. here + howpublished missing$ + { booktitle missing$ + { journal missing$ + { xml.phd } % Phd/Msc + {journal} + if$ + } {booktitle} + if$ + } { howpublished } + if$ "source" markup.xml output.xml + school + address + publisher "publisher" markup.xml.pub + editor "editor" markup.xml output.xml + edition "edition" markup.xml.edition + series "p" markup.xml + "title" markup.xml + "series" markup.xml output.xml + chapter "p" markup.xml + "title" markup.xml + "section" markup.xml output.xml + % month % ignore + year "pubdate" markup.xml output.xml + + note missing$ + { volume "volume" markup.xml output.xml + number "issue" markup.xml output.xml + pages markup.xml.pages + url "url" markup.xml output.xml } + { note "l" change.case$ "in press" = + { " " write$ newline$ } + { volume "volume" markup.xml output.xml + number "issue" markup.xml output.xml + pages markup.xml.pages + url "url" markup.xml output.xml + note "note" markup.xml output.xml + } + if$ + } + if$ + "" write$ newline$ +} + +%%EXECUTE {begin.bmcxmlcomment} +%%ITERATE {export.xml} +%%EXECUTE {end.bmcxmlcomment} + + + + diff --git a/test.json b/test.json deleted file mode 100644 index e3b71e3..0000000 --- a/test.json +++ /dev/null @@ -1,1000 +0,0 @@ -[{"download_date":"2023-07-19T00:00:00.000","identifier":"ZZHHJHJB","latest_admission_date":"2014-07-31T00:00:00.000","race":"HISPANIC","gender":"M","age":"33","bond_amount":"800000","offense":"SALE OF HALLUCIGEN/NARCOTIC SUBSTANCE F","facility":"MACDOUGALL","detainer":"SPECIAL PAROLE"} -,{"download_date":"2023-07-19T00:00:00.000","identifier":"ZZSHRHWH","latest_admission_date":"2022-12-16T00:00:00.000","race":"BLACK","gender":"M","age":"24","bond_amount":"1250000","offense":"VIOLATION OF PROBATION OR COND DISCHG","facility":"WALKER RC","detainer":"NONE"} -,{"download_date":"2023-07-19T00:00:00.000","identifier":"ZZSEZBHZ","latest_admission_date":"2023-04-24T00:00:00.000","race":"HISPANIC","gender":"M","age":"29","bond_amount":"155000","offense":"LARCENY, FIRST DEGREE BF","facility":"BRIDGEPORT CC","detainer":"NONE"} -,{"download_date":"2023-07-19T00:00:00.000","identifier":"ZZHHEBCJ","latest_admission_date":"2023-06-14T00:00:00.000","race":"HISPANIC","gender":"M","age":"35","bond_amount":"577000","offense":"ASSAULT ON POLICE OR FIRE OFFICER CF","facility":"GARNER","detainer":"NONE"} -,{"download_date":"2023-07-19T00:00:00.000","identifier":"ZZHHHLRL","latest_admission_date":"2023-04-14T00:00:00.000","race":"HISPANIC","gender":"M","age":"34","bond_amount":"180000","offense":"CRIMINAL POSSESSION OF A PISTOL DF","facility":"NEW HAVEN CC","detainer":"NONE"} 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-\begin{document} -\begin{figure}[ht!] - \centering - - \tikzset{ - do path picture/.style={% - path picture={% - \pgfpointdiff{\pgfpointanchor{path picture bounding box}{south west}}% - {\pgfpointanchor{path picture bounding box}{north east}}% - \pgfgetlastxy\x\y% - \tikzset{x=\x/2,y=\y/2}% - #1 - } - }, - cross/.style={do path picture={ - \draw [line cap=round] (-1,-1) -- (1,1) (-1,1) -- (1,-1); - }}, - plus/.style={do path picture={ - \draw [line cap=round] (-3/4,0) -- (3/4,0) (0,-3/4) -- (0,3/4); - }} - } - - - \begin{tikzpicture}[scale=0.9,y=-1cm] - % vertexes - - \node[draw, circle ] (node1) at (0,0) {$\vi{r}$}; - - - \node[draw, circle, plus , below = 1em, minimum size=1.5em] (node2) at (node1.south) {}; - - \node[draw, circle,below =1em] (node3) at (node2.south) {$\vi{2}$}; - \node[draw, circle,left=1em] (node5) at (node3.west) {$\vi{1}$}; - \node[draw, circle,right=1em] (node4) at (node3.east) {$\vi{3}$}; - - \node[draw, circle,below=1em] (merge) at (node3.south) {$M$}; - - \node[draw, circle, plus , minimum size=1.5em,below=1em] (node7) at (merge.south) {}; - \node[draw, circle,below =1em] () at (node7.south) {$\vi{2}$}; - - - \node[right] at (node1.east) { $$}; - \node[right] at (node2.east) { $parallel$}; - - - % Connection - - \draw[->] (node1) -- (node2); - \draw[->] (node2) -- (node3); - \draw[->] (node2) -- (node4); - \draw[->] (node2) -- (node5); - - \draw[->] (node3) -- (node6); - \draw[->] (node4) -- (node6); - \draw[->] (node5) -- (node6); - \draw[->] (node6) -- (node7); - - \end{tikzpicture} - \caption{Reference Scenario} - \label{fig:reference_scenario} -\end{figure} - - -\end{standalone} -\end{document} \ No newline at end of file diff --git a/varie.bib b/varie.bib deleted file mode 100644 index 8bd2b84..0000000 --- a/varie.bib +++ /dev/null @@ -1,135 +0,0 @@ - - -@MISC{XACML, -author = {}, -title = {OASIS eXtensible Access Control Markup Language (XACML)}, -month = may, -year = {2013}, -howpublished={\url{http://www.oasis-open.org/committees/xacml/}} -} - -@InProceedings{IBE:2006, -author="Boyen, Xavier -and Waters, Brent", -title="Anonymous Hierarchical Identity-Based Encryption (Without Random Oracles)", -booktitle="Advances in Cryptology - CRYPTO 2006", -year="2006", -pages="290--307", -} - -@InProceedings{ABE1:2004, -author="Sahai, Amit -and Waters, Brent", -title="Fuzzy Identity-Based Encryption", -booktitle="Advances in Cryptology -- EUROCRYPT 2005", -year="2005", -pages="457--473", -abstract="We introduce a new type of Identity-Based Encryption (IBE) scheme that we call Fuzzy Identity-Based Encryption. In Fuzzy IBE we view an identity as set of descriptive attributes. A Fuzzy IBE scheme allows for a private key for an identity, $\omega$, to decrypt a ciphertext encrypted with an identity, $\omega$ {\textasciiacutex}, if and only if the identities $\omega$ and $\omega$ {\textasciiacutex} are close to each other as measured by the ``set overlap'' distance metric. A Fuzzy IBE scheme can be applied to enable encryption using biometric inputs as identities; the error-tolerance property of a Fuzzy IBE scheme is precisely what allows for the use of biometric identities, which inherently will have some noise each time they are sampled. Additionally, we show that Fuzzy-IBE can be used for a type of application that we term ``attribute-based encryption''.", -} - -@inproceedings{ABE2:2006, -author = {Goyal, Vipul and Pandey, Omkant and Sahai, Amit and Waters, Brent}, -title = {Attribute-Based Encryption for Fine-Grained Access Control of Encrypted Data}, -year = {2006}, -publisher = {ACM}, -address = {New York, NY, USA}, -booktitle = {Proc. of CCS 06}, -pages = {89--98}, -numpages = {10}, -keywords = {hierarchical identity-based encryption, broadcast encryption, attribute-based encryption, delegation, audit logs, access control}, -} - -@article{HOMOMEnc:2015, - title={A Guide to Fully Homomorphic Encryption}, - author={Frederik Armknecht and C. Boyd and Christopher Carr and K. Gj{\o}steen and Angela J{\"a}schke and Christian A. Reuter and Martin Strand}, - journal={IACR Cryptol. ePrint Arch.}, - year={2015}, - volume={2015}, - pages={1192} -} - -@article{k-anon, -author = {Sweeney, Latanya}, -title = {K-Anonymity: A Model for Protecting Privacy}, -year = {2002}, -issue_date = {October 2002}, -publisher = {World Scientific Publishing Co., Inc.}, -address = {USA}, -volume = {10}, -number = {5}, -abstract = {Consider a data holder, such as a hospital or a bank, that has a privately held collection of person-specific, field structured data. Suppose the data holder wants to share a version of the data with researchers. How can a data holder release a version of its private data with scientific guarantees that the individuals who are the subjects of the data cannot be re-identified while the data remain practically useful? The solution provided in this paper includes a formal protection model named k-anonymity and a set of accompanying policies for deployment. A release provides k-anonymity protection if the information for each person contained in the release cannot be distinguished from at least k-1 individuals whose information also appears in the release. This paper also examines re-identification attacks that can be realized on releases that adhere to k- anonymity unless accompanying policies are respected. The k-anonymity protection model is important because it forms the basis on which the real-world systems known as Datafly, µ-Argus and k-Similar provide guarantees of privacy protection.}, -journal = {Int. J. Uncertain. Fuzziness Knowl.-Based Syst.}, -pages = {557-570}, -keywords = {re-identification, data anonymity, data fusion, data privacy, privacy} -} -@article{al2018exploring, - title={Exploring big data governance frameworks}, - author={Al-Badi, Ali and Tarhini, Ali and Khan, Asharul Islam}, - journal={Procedia Computer Science}, - volume={141}, - pages={271--277}, - year={2018}, - publisher={Elsevier} -} -@inproceedings{aissa2020decide, - title={DECIDE: A New Decisional Big Data Methodology for a Better Data Governance}, - author={Aissa, Mohamed Mehdi Ben and Sfaxi, Lilia and Robbana, Riadh}, - booktitle={EMCIS}, - pages={63--78}, - year={2020}, - organization={Springer} -} - -@incollection{DEMCHENKO201721, -title = {Chapter 2 - Cloud Computing Infrastructure for Data Intensive Applications}, -booktitle = {Big Data Analytics for Sensor-Network Collected Intelligence}, -publisher = {Academic Press}, -pages = {21-62}, -year = {2017}, -series = {Intelligent Data-Centric Systems}, -author = {Yuri Demchenko and Fatih Turkmen and Cees {de Laat} and Ching-Hsien Hsu and Christophe Blanchet and Charles Loomis}, -keywords = {Big Data, Big Data Architecture Framework (BDAF), Big data infrastructure, NIST Big Data Architecture (BDRA), Cloud computing, Intercloud Architecture Framework (ICAF), Cloud powered design, SlipStream cloud automation platform}, -abstract = {This chapter describes the general architecture and functional components of the cloud-based big data infrastructure (BDI). The chapter starts with the analysis of emerging Big Data and data intensive technologies and provides the general definition of the Big Data Architecture Framework (BDAF) that includes the following components: Big Data definition, Data Management including data lifecycle and data structures, generically cloud based BDI, Data Analytics technologies and platforms, and Big Data security, compliance, and privacy. The chapter refers to NIST Big Data Reference Architecture (BDRA) and summarizes general requirements to Big Data systems described in NIST documents. The proposed BDI and its cloud-based components are defined in accordance with the NIST BDRA and BDAF. This chapter provides detailed analysis of the two bioinformatics use cases as typical example of the Big Data applications that have being developed by the authors in the framework of the CYCLONE project. The effective use of cloud for bioinformatics applications requires maximum automation of the applications deployment and management that may include resources from multiple clouds and providers. The proposed CYCLONE platform for multicloud multiprovider applications deployment and management is based on the SlipStream cloud automation platform and includes all necessary components to build and operate complex scientific applications. The chapter discusses existing platforms for cloud powered applications development and deployment automation, in particularly referring to the SlipStream cloud automation platform, which allows multicloud applications deployment and management. The chapter also includes a short overview of the existing Big Data platforms and services provided by the major cloud services providers which can be used for fast deployment of customer Big Data applications using the benefits of cloud technologies and global cloud infrastructure.} -} - -@incollection{SHINDER2013187, -title = {Chapter 7 - Controlling Access to Your Environment with Authentication and Authorization}, -booktitle = {Windows Server 2012 Security from End to Edge and Beyond}, -publisher = {Syngress}, -address = {Boston}, -pages = {187-210}, -year = {2013}, -author = {Thomas W. Shinder and Yuri Diogenes and Debra {Littlejohn Shinder}}, -keywords = {Dynamic Access Control, Picture Password}, -abstract = {Access control requires both authentication and authorization. Windows Server 2012 includes a number of new features and technologies that enhance your ability to control access to information contained on your network file servers. The major advance in this area is Dynamic Access Control, which makes it possible for you to use claims-based authorization for accessing information on your file servers. This means that you are no longer limited to conventional user/group-based access control. Windows 8 and Windows Server 2012 also introduced a new method for logging onto computers called Picture Password. With Picture Password, the user can select a picture and then perform a number of gestures on the picture. The picture and the gestures are packaged with the user's user name and password. The user can then log on by being presented with the picture and repeating the gestures, which will open the package and expose the user name and password to the system. In this chapter, we will look at how these technologies work and how to implement them.} -} - -@inproceedings{5v, - title={Addressing big data issues in scientific data infrastructure}, - author={Y. Demchenko and P. Grosso and C. {de Laat} and P. Membrey}, - booktitle={Proc. of CTS 2013}, - address={San Diego, CA, USA}, - year={2013}, - month={May} -} - -@Article{Byun2008, -author={Byun, Ji-Won -and Li, Ninghui}, -title={Purpose based access control for privacy protection in relational database systems}, -journal={The VLDB Journal}, -year={2008}, -month={Jul}, -day={01}, -volume={17}, -number={4}, -pages={603-619}, -} - -@manual{EUdataregulations2018, - title = {The General Data Protection Regulation (GDPR) - Regulation (EU) 2016/679}, - author = {EU}, - url = {https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=CELEX%3A02016R0679-20160504&qid=1532348683434}, - date = {2018-05-25}, -} -