clean up old/commented code

[hematthi]

EchelleInstruments.jl/src/neid/io.jl

Lines 8 to 53 in 98d5a94

	"""Create Dataframe containing filenames and key data for all files neid*.fits in directory"""
	function make_manifest(data_path::String ; max_spectra_to_use::Int = 1000 )
	df_filenames = EchelleInstruments.make_manifest(data_path,r"^neidL[1,2]_\d+[T\.]\d+\.fits$")
	#=
	dir_filelist = readdir(data_path,join=true)
	idx_spectra = map(fn->occursin(r"^neidL1_\d+[T\.]\d+\.fits$", last(split(fn,'/')) ),dir_filelist)
	spectra_filelist = dir_filelist[idx_spectra]
	=#
	#=
	df_files = DataFrame(Filename = String[], target = String[], bjd = Float64[], ssbz=Float64[] )
	map(fn->add_metadata_from_fits!(df_files,fn),spectra_filelist)
	df_files
	=#
	#@assert length(spectra_filelist) >= 1
	#df_files = DataFrame(read_metadata(spectra_filelist[1]))
	df_files = DataFrame(read_metadata(df_filenames.Filename[1]))
	keys = propertynames(df_files)
	allowmissing!(df_files, keys[map(k->k∉[:Filename, :bjd, :target, :airmass],keys)] )
	#println("df_files = ", df_files)
	#if length(spectra_filelist) >= 2
	if length(df_filenames.Filename) >= 2
	max_idx = min(max_spectra_to_use,length(df_filenames.Filename))
	map(fn->add_metadata_from_fits!(df_files,fn),df_filenames.Filename[2:max_idx])
	end
	#=
	for i in 2:length(spectra_filelist)
	try
	add_metadata_from_fits!(df_files,spectra_filelist[i])
	catch
	println("# Problem reading ", spectra_filelist[i])
	fields_to_save = metadata_symbols_default(NEID2D())
	fields_str_to_save = metadata_strings_default(NEID2D())
	metadata_tmp = read_metadata_from_fits(spectra_filelist[i],fields=fields_to_save,fields_str=fields_str_to_save)
	println("Before: ", metadata_tmp)
	#println("After : ", metadata_tmp)
	#push!(df_files,metadata_tmp)
	end
	end
	=#
	df_files
	end