diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
new file mode 100644
index 0000000..3ead8d3
--- /dev/null
+++ b/.github/workflows/lint.yml
@@ -0,0 +1,36 @@
+name: Lint
+
+on: [pull_request, push]
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  Pylint:
+    if: github.event.pull_request.draft == false
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.10'
+
+      - name: Install Poetry
+        run: |
+          pip install poetry
+
+      - name: Configure Poetry
+        run: |
+          poetry config virtualenvs.create false
+
+      - name: Install dependencies
+        run: |
+          make install
+
+      - name: Run linting checks
+        run: |
+          make check-pylint
\ No newline at end of file
diff --git a/.github/workflows/precommit.yml b/.github/workflows/precommit.yml
new file mode 100644
index 0000000..92c9138
--- /dev/null
+++ b/.github/workflows/precommit.yml
@@ -0,0 +1,36 @@
+name: Pre-commit
+
+on: [pull_request, push]
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  Pre-commit:
+    if: github.event.pull_request.draft == false
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.10'
+
+      - name: Install Poetry
+        run: |
+          pip install poetry
+
+      - name: Configure Poetry
+        run: |
+          poetry config virtualenvs.create false
+
+      - name: Install dependencies
+        run: |
+          make install
+
+      - name: Run Pre-commit checks
+        run: |
+          make precommit
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..f8af546
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,173 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+.idea/
+
+# VsCode
+.vscode/
+
+# Project data folder and data in general
+data/*
+!data/README.md
+**/*.nc
+**/*.tif
+
+# Makefile and configurations
+Makefile.private
+scripts/config.sh
diff --git a/.make/base.make b/.make/base.make
new file mode 100644
index 0000000..185e80b
--- /dev/null
+++ b/.make/base.make
@@ -0,0 +1,456 @@
+# DO NOT MODIFY!!!
+# If necessary, override the corresponding variable and/or target, or create new ones
+# in one of the following files, depending on the nature of the override :
+#
+# Makefile.variables, Makefile.targets or Makefile.private`,
+#
+# The only valid reason to modify this file is to fix a bug or to add new
+# files to include.
+#
+# Please report bugs to francis.pelletier@mila.quebec
+
+# Basic variables
+PROJECT_PATH := $(dir $(abspath $(firstword $(MAKEFILE_LIST))))
+MAKEFILE_NAME := $(word $(words $(MAKEFILE_LIST)),$(MAKEFILE_LIST))
+SHELL := /usr/bin/env bash
+BUMP_TOOL := bump-my-version
+APP_VERSION := 0.0.0
+DOCKER_COMPOSE ?= docker compose
+AUTO_INSTALL ?=
+
+# Conda variables
+# CONDA_TOOL can be overridden in Makefile.private file
+CONDA_TOOL := conda
+CONDA_ENVIRONMENT ?=
+
+# Colors
+_SECTION := \033[1m\033[34m
+_TARGET  := \033[36m
+_NORMAL  := \033[0m
+
+.DEFAULT_GOAL := help
+## -- Informative targets ------------------------------------------------------------------------------------------- ##
+
+.PHONY: all
+all: help
+
+# Auto documented help targets & sections from comments
+#	detects lines marked by double #, then applies the corresponding target/section markup
+#   target comments must be defined after their dependencies (if any)
+#	section comments must have at least a double dash (-)
+#
+# 	Original Reference:
+#		https://marmelab.com/blog/2016/02/29/auto-documented-makefile.html
+# 	Formats:
+#		https://misc.flogisoft.com/bash/tip_colors_and_formatting
+#
+#	As well as influenced by it's implementation in the Weaver Project
+#		https://github.com/crim-ca/weaver/tree/master
+
+.PHONY: help
+# note: use "\#\#" to escape results that would self-match in this target's search definition
+help: ## print this help message (default)
+	@echo ""
+	@echo "Please use 'make <target>' where <target> is one of below options."
+	@echo ""
+	@for makefile in $(MAKEFILE_LIST); do \
+        grep -E '\#\#.*$$' "$(PROJECT_PATH)/$${makefile}" | \
+            awk 'BEGIN {FS = "(:|\-\-\-)+.*\#\# "}; \
+            	/\--/ {printf "$(_SECTION)%s$(_NORMAL)\n", $$1;} \
+				/:/  {printf "    $(_TARGET)%-24s$(_NORMAL) %s\n", $$1, $$2} ' 2>/dev/null ; \
+    done
+
+.PHONY: targets
+targets: help
+
+.PHONY: version
+version: ## display current version
+	@echo "version: $(APP_VERSION)"
+
+## -- Conda targets ------------------------------------------------------------------------------------------------- ##
+
+.PHONY: conda-install
+conda-install: ## Install Conda on your local machine
+	@echo "Looking for [$(CONDA_TOOL)]..."; \
+	$(CONDA_TOOL) --version; \
+	if [ $$? != "0" ]; then \
+		echo " "; \
+		echo "Your defined Conda tool [$(CONDA_TOOL)] has not been found."; \
+		echo " "; \
+		echo "If you know you already have [$(CONDA_TOOL)] or some other Conda tool installed,"; \
+		echo "Check your [CONDA_TOOL] variable in the Makefile.private for typos."; \
+		echo " "; \
+		echo "If your conda tool has not been initiated through your .bashrc file,"; \
+		echo "consider using the full path to its executable instead when"; \
+		echo "defining your [CONDA_TOOL] variable"; \
+		echo " "; \
+		echo "If in doubt, don't install Conda and manually create and activate"; \
+		echo "your own Python environment."; \
+		echo " "; \
+		echo -n "Would you like to install Miniconda ? [y/N]: "; \
+		read ans; \
+		case $$ans in \
+			[Yy]*) \
+				echo "Fetching and installing miniconda"; \
+				echo " "; \
+				wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh; \
+    			bash ~/miniconda.sh -b -p ${HOME}/.conda; \
+    			export PATH=${HOME}/.conda/bin:$PATH; \
+    			conda init; \
+				/usr/bin/rm ~/miniconda.sh; \
+				;; \
+			*) \
+				echo "Skipping installation."; \
+				echo " "; \
+				;; \
+		esac; \
+	else \
+		echo "Conda tool [$(CONDA_TOOL)] has been found, skipping installation"; \
+	fi;
+
+.PHONY: conda-create-env
+conda-create-env: conda-install ## Create a local Conda environment based on `environment.yml` file
+	@$(CONDA_TOOL) env create -f environment.yml
+
+.PHONY: conda-env-info
+conda-env-info: ## Print information about active Conda environment using <CONDA_TOOL>
+	@$(CONDA_TOOL) info
+
+.PHONY: _conda-poetry-install
+_conda-poetry-install:
+	$(CONDA_TOOL) run -n $(CONDA_ENVIRONMENT) $(CONDA_TOOL) install -c conda-forge -y poetry; \
+
+
+
+.PHONY:conda-poetry-install
+conda-poetry-install: ## Install Poetry in currently active Conda environment. Will fail if Conda is not found
+	@poetry --version; \
+    	if [ $$? != "0" ]; then \
+			echo "Poetry not found, proceeding to install Poetry..."; \
+			echo "Looking for [$(CONDA_TOOL)]...";\
+			$(CONDA_TOOL) --version; \
+			if [ $$? != "0" ]; then \
+				echo "$(CONDA_TOOL) not found; Poetry will not be installed"; \
+			else \
+				echo "Installing Poetry with Conda in [$(CONDA_ENVIRONMENT)] environment"; \
+				make -s _conda-poetry-install; \
+			fi; \
+		fi;
+
+.PHONY: conda-poetry-uninstall
+conda-poetry-uninstall: ## Uninstall Poetry located in currently active Conda environment
+	$(CONDA_TOOL) run -n $(CONDA_ENVIRONMENT) $(CONDA_TOOL) remove poetry
+
+.PHONY: conda-clean-env
+conda-clean-env: ## Completely removes local project's Conda environment
+	$(CONDA_TOOL) env remove -n $(CONDA_ENVIRONMENT)
+
+## -- Poetry targets ------------------------------------------------------------------------------------------------ ##
+
+.PHONY: poetry-install-auto
+poetry-install-auto: ## Install Poetry in activated Conda environment, or with pipx if Conda not found
+	@poetry --version; \
+    	if [ $$? != "0" ]; then \
+			echo "Poetry not found, proceeding to install Poetry..."; \
+			echo "Looking for [$(CONDA_TOOL)]...";\
+			$(CONDA_TOOL) --version; \
+            if [ $$? != "0" ]; then \
+				echo "$(CONDA_TOOL) not found, trying with pipx"; \
+				pipx --version; \
+				if [ $$? != "0" ]; then \
+					echo "pipx not found; installing pipx"; \
+					pip install --user pipx; \
+					pipx ensurepath; \
+				fi; \
+					pipx install poetry; \
+				else \
+					echo "Installing poetry with Conda"; \
+					make -s _conda-poetry-install; \
+				fi; \
+		fi;
+
+.PHONY: poetry-install
+poetry-install: ## Install standalone Poetry using pipx and create Poetry env. Will install pipx if not found
+	@echo "Looking for Poetry version...";\
+	poetry --version; \
+    	if [ $$? != "0" ]; then \
+    	  	if [ "$(AUTO_INSTALL)" = "true" ]; then \
+				ans="y";\
+			else \
+			  	echo "Looking for pipx version...";\
+			  	pipx --version; \
+					if [ $$? != "0" ]; then \
+						echo""; \
+						echo -e "\e[1;39;41m-- WARNING --\e[0m The following pip has been found and will be used to install pipx: "; \
+						echo "    -> "$$(which pip); \
+						echo""; \
+						echo "If you do not have write permission to that environment, you will need to either activate"; \
+						echo "a different environment, or create a virtual one (ex. venv) to install pipx into it."; \
+						echo "See documentation for more information."; \
+						echo""; \
+						echo "Alternatively, the [make poetry-install-venv] target can also be used"; \
+						echo""; \
+    	  				echo -n "Would you like to install pipx and Poetry? [y/N]: "; \
+					else \
+					  	echo""; \
+    	  			  	echo -n "Would you like to install Poetry using pipx? [y/N]: "; \
+					fi; \
+				read ans; \
+			fi; \
+			case $$ans in \
+				[Yy]*) \
+					pipx --version; \
+					if [ $$? != "0" ]; then \
+						echo "pipx not found; installing pipx"; \
+						pip install --user pipx || pip install pipx; \
+						pipx ensurepath; \
+					fi; \
+						echo "Installing Poetry"; \
+						pipx install poetry; \
+						make -s poetry-create-env; \
+					;; \
+				*) \
+					echo "Skipping installation."; \
+					echo " "; \
+					;; \
+			esac; \
+		fi;
+
+.PHONY: poetry-install-venv
+poetry-install-venv: ## Install standalone Poetry and Poetry environment. Will install pipx in $HOME/.pipx_venv
+	@echo "Creating virtual environment using venv here : [$$HOME/.pipx_venv]"
+	@python3 -m venv $$HOME/.pipx_venv
+	@echo "Activating virtual environment [$$HOME/.pipx_venv]"
+	@source $$HOME/.pipx_venv/bin/activate
+	@pip3 install pipx
+	@make -s poetry-install
+
+.PHONY: poetry-env-info
+poetry-env-info: ## Information about the currently active environment used by Poetry
+	@poetry env info
+
+.PHONY: poetry-create-env
+poetry-create-env: ## Create a Poetry managed environment for the project (Outside of Conda environment).
+	@echo "Creating Poetry environment that will use Python $(PYTHON_VERSION)"; \
+	poetry env use $(PYTHON_VERSION); \
+	poetry env info
+	@echo""
+	@echo "This environment can be accessed either by using the <poetry run YOUR COMMAND>"
+	@echo "command, or activated with the <poetry shell> command."
+	@echo""
+	@echo "Use <poetry --help> and <poetry list> for more information"
+	@echo""
+
+.PHONY: poetry-remove-env
+poetry-remove-env: ## Remove current project's Poetry managed environment.
+	@if [ "$(AUTO_INSTALL)" = "true" ]; then \
+		ans_env="y";\
+		env_path=$$(poetry env info -p); \
+		env_name=$$(basename $$env_path); \
+	else \
+		echo""; \
+		env_path=$$(poetry env info -p); \
+		if [[ "$$env_path" != "" ]]; then \
+			echo "The following environment has been found for this project: "; \
+			env_name=$$(basename $$env_path); \
+			echo""; \
+			echo "Env name : $$env_name"; \
+			echo "PATH     : $$env_path"; \
+			echo""; \
+			echo "If the active environment listed above is a Conda environment,"; \
+			echo "Choosing to delete it will have no effect; use the target <make conda-clean-env>"; \
+			echo""; \
+			echo -n "Would you like delete the environment listed above? [y/N]: "; \
+			read ans_env; \
+		else \
+		  env_name="None"; \
+		  env_path="None"; \
+  		fi; \
+	fi; \
+	if [[ $$env_name != "None" ]]; then \
+		case $$ans_env in \
+			[Yy]*) \
+				poetry env remove $$env_name || echo "No environment was removed"; \
+				;; \
+			*) \
+				echo "No environment was found/provided - skipping environment deletion"; \
+				;;\
+		esac; \
+	fi; \
+
+.PHONY: poetry-uninstall
+poetry-uninstall: poetry-remove-env ## Uninstall pipx-installed Poetry and the created environment
+	@if [ "$(AUTO_INSTALL)" = "true" ]; then \
+		ans="y";\
+	else \
+		echo""; \
+		echo -n "Would you like to uninstall pipx-installed Poetry? [y/N]: "; \
+		read ans; \
+	fi; \
+	case $$ans in \
+		[Yy]*) \
+			pipx uninstall poetry; \
+			;; \
+		*) \
+			echo "Skipping uninstallation."; \
+			echo " "; \
+			;; \
+	esac; \
+
+.PHONY: poetry-uninstall-pipx
+poetry-uninstall-pipx: poetry-remove-env ## Uninstall pipx-installed Poetry, the created Poetry environment and pipx
+	@if [ "$(AUTO_INSTALL)" = "true" ]; then \
+		ans="y";\
+	else \
+		echo""; \
+		echo -n "Would you like to uninstall pipx-installed Poetry and pipx? [y/N]: "; \
+		read ans; \
+	fi; \
+	case $$ans in \
+		[Yy]*) \
+			pipx uninstall poetry; \
+			pip uninstall -y pipx; \
+			;; \
+		*) \
+			echo "Skipping uninstallation."; \
+			echo " "; \
+			;; \
+	esac; \
+
+.PHONY: poetry-uninstall-venv
+poetry-uninstall-venv: ## Uninstall pipx-installed Poetry, the created Poetry environment, pipx and $HOME/.pipx_venv
+	@python3 -m venv $$HOME/.pipx_venv
+	@source $$HOME/.pipx_venv/bin/activate
+	@make -s poetry-uninstall-pipx
+	@if [ "$(AUTO_INSTALL)" = "true" ]; then \
+		ans="y";\
+	else \
+		echo""; \
+		echo -n "Would you like to remove the virtual environment located here : [$$HOME/.pipx_venv] ? [y/N]: "; \
+		read ans; \
+	fi; \
+	case $$ans in \
+		[Yy]*) \
+			rm -r $$HOME/.pipx_venv; \
+			;; \
+		*) \
+			echo "Skipping [$$HOME/.pipx_venv] virtual environment removal."; \
+			echo ""; \
+			;; \
+	esac; \
+
+## -- Install targets (All install targets will install Poetry if not found using `make poetry-install-auto`)-------- ##
+
+.PHONY: install
+install: install-precommit ## Install the application package, developer dependencies and pre-commit hook
+
+.PHONY: install-precommit
+install-precommit: install-dev## Install the pre-commit hooks (also installs developer dependencies)
+	@if [ -f .git/hooks/pre-commit ]; then \
+		echo "Pre-commit hook found"; \
+	else \
+	  	echo "Pre-commit hook not found, proceeding to configure it"; \
+		poetry run pre-commit install; \
+	fi;
+
+.PHONY: install-dev
+install-dev: poetry-install-auto ## Install the application along with developer dependencies
+	@poetry install --with dev
+
+.PHONY: install-with-lab
+install-with-lab: poetry-install-auto ## Install the application and it's dev dependencies, including Jupyter Lab
+	@poetry install --with dev --with lab
+
+
+.PHONY: install-package
+install-package: poetry-install-auto ## Install the application package only
+	@poetry install
+
+## -- Versioning targets -------------------------------------------------------------------------------------------- ##
+
+# Use the "dry" target for a dry-run version bump, ex.
+# make bump-major dry
+BUMP_ARGS ?= --verbose
+ifeq ($(filter dry, $(MAKECMDGOALS)), dry)
+	BUMP_ARGS := $(BUMP_ARGS) --dry-run --allow-dirty
+endif
+
+.PHONY: bump-major
+bump-major: ## Bump application major version  <X.0.0>
+	$(BUMP_TOOL) $(BUMP_ARGS) bump major
+
+.PHONY: bump-minor
+bump-minor: ## Bump application minor version  <0.X.0>
+	$(BUMP_TOOL) $(BUMP_ARGS) bump minor
+
+.PHONY: bump-patch
+bump-patch: ## Bump application patch version  <0.0.X>
+	$(BUMP_TOOL) $(BUMP_ARGS) bump patch
+
+## -- Docker targets ------------------------------------------------------------------------------------------------ ##
+
+## -- Apptainer/Singularity targets --------------------------------------------------------------------------------- ##
+
+## -- Linting targets ----------------------------------------------------------------------------------------------- ##
+
+.PHONY: check-lint
+check-lint: ## Check code linting (black, isort, flake8 and pylint)
+	poetry run tox -e black,isort,flake8,pylint
+
+.PHONY: check-pylint
+check-pylint: ## Check code with pylint
+	poetry run tox -e pylint
+
+.PHONY: fix-lint
+fix-lint: ## Fix code linting (black, isort, flynt)
+	poetry run tox -e fix
+
+.PHONY: precommit
+precommit: ## Run Pre-commit on all files manually
+	poetry run tox -e precommit
+
+## -- Tests targets ------------------------------------------------------------------------------------------------- ##
+
+.PHONY: test
+test: ## Run all tests
+	poetry run tox -e test
+
+TEST_ARGS ?=
+MARKER_TEST_ARGS = -m "$(TEST_ARGS)"
+SPECIFIC_TEST_ARGS = -k "$(TEST_ARGS)"
+CUSTOM_TEST_ARGS = "$(TEST_ARGS)"
+
+.PHONY: test-marker
+test-marker: ## Run tests using pytest markers. Ex. make test-tag TEST_ARGS="<marker>"
+	@if [ -n "$(TEST_ARGS)" ]; then \
+		poetry run tox -e test-custom -- -- $(MARKER_TEST_ARGS); \
+	else \
+		echo "" ; \
+    	echo 'ERROR : Variable TEST_ARGS has not been set, please rerun the command like so :' ; \
+	  	echo "" ; \
+    	echo '            make test-marker TEST_ARGS="<marker>"' ; \
+	  	echo "" ; \
+    fi
+.PHONY: test-specific
+test-specific: ## Run specific tests using the -k option. Ex. make test-specific TEST_ARGS="<name-of-test>"
+	@if [ -n "$(TEST_ARGS)" ]; then \
+  		poetry run tox -e test-custom -- -- $(SPECIFIC_TEST_ARGS); \
+	else \
+		echo "" ; \
+    	echo 'ERROR : Variable TEST_ARGS has not been set, please rerun the command like so :' ; \
+	  	echo "" ; \
+    	echo '            make test-specific TEST_ARGS="<name-of-the-test>"' ; \
+	  	echo "" ; \
+    fi
+
+.PHONY: test-custom
+test-custom: ## Run tests with custom args. Ex. make test-custom TEST_ARGS="-m 'not offline'"
+	@if [ -n "$(TEST_ARGS)" ]; then \
+  		poetry run tox -e test-custom -- -- $(CUSTOM_TEST_ARGS); \
+	else \
+	  	echo "" ; \
+    	echo 'ERROR : Variable TEST_ARGS has not been set, please rerun the command like so :' ; \
+	  	echo "" ; \
+    	echo '            make test-custom TEST_ARGS="<custom-args>"' ; \
+	  	echo "" ; \
+    fi
\ No newline at end of file
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
new file mode 100644
index 0000000..dbed080
--- /dev/null
+++ b/.pre-commit-config.yaml
@@ -0,0 +1,45 @@
+exclude: "^docs/|/migrations/"
+default_stages: [commit]
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.6.0
+    hooks:
+      - id: check-json
+      - id: check-toml
+      - id: check-xml
+      - id: check-yaml
+      - id: debug-statements
+      - id: check-builtin-literals
+      - id: check-case-conflict
+      - id: check-docstring-first
+      - id: detect-private-key
+      - id: check-added-large-files
+
+  - repo: https://github.com/psf/black
+    rev: 23.12.1
+    hooks:
+      - id: black
+
+  - repo: https://github.com/PyCQA/isort
+    rev: 5.13.2
+    hooks:
+      - id: isort
+
+  - repo: https://github.com/ikamensh/flynt
+    rev: 1.0.1
+    hooks:
+      - id: flynt
+        args: ["--fail-on-change"]
+
+  - repo: https://github.com/PyCQA/flake8
+    rev: 7.0.0
+    hooks:
+      - id: flake8
+        additional_dependencies: [flake8-pyproject] 
+
+# sets up .pre-commit-ci.yaml to ensure pre-commit dependencies stay up to date
+ci:
+  autoupdate_schedule: weekly
+  skip: []
+  submodules: false
diff --git a/CHANGES.md b/CHANGES.md
new file mode 100644
index 0000000..0601bc4
--- /dev/null
+++ b/CHANGES.md
@@ -0,0 +1,9 @@
+# CHANGES.md
+
+[Unreleased](https://github.com/RolnickLab/ClimateSetExtension/tree/main) (latest)
+-------------------------------------------------------------------------------------
+
+- Project initialization
+- Add linting tools
+- Add CI
+- Add basic structure of package
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
new file mode 100644
index 0000000..5ac6828
--- /dev/null
+++ b/CONTRIBUTING.md
@@ -0,0 +1,51 @@
+# Contributing to this repository
+
+## Adding dependencies
+
+Please make sure to add dependencies using `Poetry`, so the project environment
+is kept up to date and functional for other users.
+
+To add a new dependency:
+
+```
+poetry add <dependency_name>
+```
+
+To add a new dependency with a specific version:
+
+```
+poetry add "<dependency_name>==<x.x.x>"
+```
+
+To add a new dependency to a specific group of dependencies 
+(for exemple, the developer dependencies):
+
+```
+poetry add --group dev <dependency_name>
+```
+
+## Design patterns
+Two main considerations should be made when contributing to this package.
+
+First, a polymorphic approach, using abstract classes and their concrete implementation,
+should be prioritized in order to increase maintainability and extensibility.
+
+Therefore, new additions should try to follow this design pattern and either implement
+new concrete classes or create new abstract classes and their implementations for 
+completely new behavior or needs.
+
+Secondly, a dependency-injection approach is to be preferred, as well as a composition 
+approach when creating new modules or extending existing ones.
+
+Functional approaches are also acceptable when appropriate, but classes should still
+be used for data management/representation. This can be done with either regular 
+classes, `dataclasses`, or `pydantic` models.
+
+## Tests
+
+New contributions should include appropriate tests.
+
+## Docstring and type hinting
+
+Docstring format should follow the Numpy standard and type hinting should be used
+as per the PEP8 standard : https://docs.python.org/3/library/typing.html
\ No newline at end of file
diff --git a/Makefile b/Makefile
new file mode 100644
index 0000000..323195b
--- /dev/null
+++ b/Makefile
@@ -0,0 +1,19 @@
+#
+# DO NOT MODIFY!!!
+# If necessary, override the corresponding variable and/or target, or create new ones
+# in one of the following files, depending on the nature of the override :
+#
+# Makefile.variables, Makefile.targets or Makefile.private,
+#
+# The only valid reason to modify this file is to fix a bug or to add new
+# files to include.
+#
+# Please report bugs to francis.pelletier@mila.quebec
+
+# Include base makefile
+include .make/base.make
+# Include custom targets and variables
+-include Makefile.targets
+-include Makefile.variables
+# Private variables and targets import to override variables for local
+-include Makefile.private
diff --git a/Makefile.private.example b/Makefile.private.example
new file mode 100644
index 0000000..be83cd0
--- /dev/null
+++ b/Makefile.private.example
@@ -0,0 +1,28 @@
+# This file is meant for private variables and targets that apply only to each person's
+# local developments variables (ie. configurations specific to your own local
+# development environment) as well as sensitive information, like access keys,
+# passwords and such.
+#
+# Ex. personal targets while exploring new parameters or configurations that should not
+# be share with other project members
+#
+# Make a copy of this file and name it `Makefile.private`, then define your own
+# variables in it.
+#
+# `Makefile.private` is already ignored by the `.gitignore` file.
+#
+# DO NOT COMMIT YOUR `Makefile.private`!!!
+
+
+## Private variables
+
+# If you use a different Conda tool, say `micromamba`, or if you use a different alias
+# CONDA_TOOL := <YOU_CONDA_TOOL_IF_DIFFERENT_FROM_CONDA>
+DOCKER_COMPOSE := docker compose
+
+# Some targets use this variable. A 'false' value will ask user to confirm some steps.
+# a 'true' value will automatically install/remove without asking beforehand.
+AUTO_INSTALL := false
+
+## -- Private targets ------------------------------------------------------------------------------------------------##
+
diff --git a/Makefile.targets b/Makefile.targets
new file mode 100644
index 0000000..2554e5e
--- /dev/null
+++ b/Makefile.targets
@@ -0,0 +1,8 @@
+# This file is for custom makefile targets at the project level.
+# They are meant to be share by the whole project team.
+
+## -- Project targets ----------------------------------------------------------------------------------------------- ##
+
+.PHONY: custom-target-example
+custom-target-example: ## Example custom target
+	@echo The name of the package contained in this repository is [$(APPLICATION_NAME)]
\ No newline at end of file
diff --git a/Makefile.variables b/Makefile.variables
new file mode 100644
index 0000000..8876d41
--- /dev/null
+++ b/Makefile.variables
@@ -0,0 +1,6 @@
+# This file is for custom makefile variable at the project level.
+# They are meant to be share by the whole project team.
+
+APPLICATION_NAME := climateset
+CONDA_ENVIRONMENT := climateset
+PYTHON_VERSION := 3.10
\ No newline at end of file
diff --git a/README.md b/README.md
index 3ceea5c..f33e077 100644
--- a/README.md
+++ b/README.md
@@ -1 +1,311 @@
-# ClimateSetExtension
\ No newline at end of file
+# ClimatesetExtension
+
+## Tools and Makefile structure
+
+The project uses a Makefile to automate most operations. If make is available on your 
+machine there's a good chance this will work.
+
+The following Makefile files should not be modified, but can be consulted:
+
+* [Makefile](Makefile) : Orchestration of the different files
+* [base.make](.make/base.make) : Shared utilities, project agnostic.
+
+The following Makefile files are project or user specific:
+
+* [Makefile.variables](Makefile.variables) : Shared project variables.
+* [Makefile.targets](Makefile.targets) : Shared project targets.
+* [Makefile.private](Makefile.private.example) : User specific variables and targets.
+
+### Basic Information
+
+The different targets and their description can be examined by executing the command
+`make targets`
+
+Ex.
+
+![](img/make_targets.png)
+
+## Requirements
+
+This project has only been tested in a Linux (Debian based) environment and assumes
+some basic tools for development are already installed.
+
+It also requires that minimally `Python`, `pip` and `venv` are available on your system.
+
+This project assumes environment management will be done with `Conda` or directly through
+`Poetry`. 
+
+* [Poetry](https://python-poetry.org/docs/basic-usage/)
+* [Conda](https://conda.io/projects/conda/en/latest/user-guide/getting-started.html)
+
+While it is possible to manage the environment with, for example, pyenv or virtualenv, 
+those specific use cases are not supported by the Makefile and require users to set up 
+their own environments beforehand.
+
+For detailed information about `Poetry` and `Conda`:
+
+If you want to use something else than `Conda` or `Poetry` to manage environment isolation, 
+it is recommended to follow 
+[Poetry's guidelines on managing environments](https://python-poetry.org/docs/managing-environments/)
+
+Poetry is not included in the [environment.yml](environment.yml), due to some possible problems
+in compute cluster environments, but will be installed automatically if needed
+by most `install` targets.
+
+Currently, the project runs on Python version 3.10.
+
+## Environment management choices
+
+Environment management can become quite complicated. Using Conda allows a certain
+ease of management since the Poetry installation is contained inside the created Conda 
+environment.
+
+However, some computing environments do not permit the use of Conda (like certain SLURM
+clusters). This is why the `pipx` option for Poetry is also enabled in this project.
+
+**Unless you really know what you are doing, it is not recommended to install Poetry
+as a standalone tool (with pipx) while also using Conda environments.**
+
+There are 2 recommended ways to manage `Poetry` if it is not already configured on 
+your system. Using `Conda`, or installing `Poetry` as a standalone tool using `pipx`
+
+It is not recommended to install `Poetry` in the same environment that will be managed
+by `Poetry` in order to minimize dependency conflicts.
+
+### Note about Pipx installation 
+
+If you want to install `Poetry` using `pipx`, and pipx is not already 
+installed on your system, it will be installed using `pip`. 
+
+Write access to that environment is required (use `which pip` to learn which 
+environment is active if not sure).
+
+Particularly on remote compute clusters (SLURM), default system `pip` will probably not 
+allow users to install packages. One way around it is to create a generic virtual 
+environment using `venv` like so (preferably in your $HOME). It can be done manually using the 
+following commands:
+
+Ex.
+```
+python -m venv $HOME/.venv
+source $HOME/.venv/bin/activate
+pip install pipx
+pipx ensurepath
+pipx install poetry
+deactivate
+```
+
+This virtual environment can be deactivated afterward, as Poetry will still be 
+available to the user.
+
+There are also targets in the [Poetry section](#using-poetry) that handle this use case.
+
+## Using Conda
+
+If you need or want to install Conda:
+```
+make conda-install 
+```
+
+To create the conda environment:
+```
+make conda-create-env
+```
+
+To remove the conda environment:
+```
+make conda-clean-env
+```
+
+To install `Poetry` using `Conda` (after conda environment as been created:
+
+```
+make conda-poetry-install
+```
+
+To remove poetry from the Conda environment:
+
+```
+make conda-poetry-uninstall
+```
+
+Make sure to activate the conda environment before moving on the 
+[install targets](#install-targets).
+
+## Using Poetry
+
+The following target will first try to install `Poetry` in the active `Conda` 
+environment; if it can't find `Conda`, it will proceed to install via `pipx`
+
+```
+make poetry-install-auto
+```
+
+The following target will allow environment management directly with a standalone 
+`Poetry` installation through `pipx`. It will also create a virtual environment managed 
+by `Poetry` that uses Python 3.10.
+
+```
+make poetry-install
+```
+
+If the compute environment requires `pipx` to be installed in a virtual environment:
+
+```
+make poetry-install-venv
+```
+
+If you already have Poetry installed and configured, or want to recreate it later, 
+an environment for the project can also be created using:
+
+```
+make poetry-create-env
+```
+
+and removed using: 
+
+```
+make poetry-remove-env
+```
+
+Information about the currently active environment used by `Poetry`, 
+whether `Conda` or `Poetry`, can be seen using:
+
+```
+make poetry-env-info
+```
+
+To remove `Poetry` that was installed with `pipx` (be sure to execute this command in 
+the environment where pipx is installed):
+
+```
+make poetry-uninstall
+```
+
+To uninstall both `Poetry` and `pipx` (again, be sure to execute this command in 
+the environment where pipx is installed):
+
+```
+make poetry-uninstall
+```
+
+If `Poetry` and `pipx` were installed using the `make poetry-install-venv`, they can be 
+removed, including the virtual environment, using:
+
+```
+make poetry-uninstall-venv
+```
+
+**Important note!**
+
+If you have an active `Conda` environment  and install `Poetry` using `pipx`,
+you will have to use `poetry run python <your_command_or_script_path>` instead of 
+`python <your_command_or_script_path>`, (which is normal when using Poetry) as 
+Conda's active environment will define the available default `python` executable.
+
+
+## Installing the python package and it's dependencies
+
+**All `install` targets will first check if `Poetry` is available and try to install
+it with the `make poetry-install-auto` target.**
+
+To install the package, development dependencies and CLI tools (if available):
+```
+make install
+```
+
+To install only the package, without development tools:
+```
+make install-package
+```
+
+## First time user quick setup
+
+### Conda
+The easiest and quickest way to get up and running with Conda.
+
+Create Conda environment (will check for Conda and install it if not found):
+
+```
+make conda-create-env
+```
+
+Activate Conda environment (substitute with your <CONDA_TOOL> if something else 
+than `conda`:
+
+```
+conda activate climateset
+```
+
+Install package:
+
+```
+make install
+```
+
+### Poetry
+
+The easiest and quickest way to get up and running with Poetry.
+
+Install pipx and Poetry and activate project environment :
+
+```
+make poetry-install 
+```
+_can be replaced by `make poetry-install-venv` if needed_
+
+If Poetry is already available, the environment can be created using:
+
+```
+make poetry-create-env
+```
+
+Install package:
+
+```
+make install
+```
+
+## Basic automations
+
+To run linting checks with `flake8`, `pylint`, `black` and `isort`:
+```
+make check-lint
+```
+
+To fix linting with `black`, `flynt` and `isort`:
+```
+make fix-lint
+```
+
+To run a `pre-commit` check before actually committing:
+```
+make precommit
+```
+
+To run tests:
+```
+make test
+```
+
+
+## Data
+
+## Experiment tracking
+
+Nothing is set up for now, but since Weights and Bias is accessible to MILA and DRAC, it
+will probably be the way to go.
+
+
+## Training
+
+## Contributing to this repository
+
+See [Contributing guidelines](CONTRIBUTING.md)
+
+
+### Configurations
+Configurations are in the [config/](config) folder.
+
+
+### Tests
diff --git a/climateset/__init__.py b/climateset/__init__.py
new file mode 100644
index 0000000..8573550
--- /dev/null
+++ b/climateset/__init__.py
@@ -0,0 +1,7 @@
+from pathlib import Path
+
+APP_ROOT = Path(__file__).resolve().parent
+PROJECT_ROOT = APP_ROOT.parent
+CONFIG = PROJECT_ROOT / "config"
+DATA_DIR = PROJECT_ROOT / "data"
+SCRIPT_DIR = PROJECT_ROOT / "scripts"
diff --git a/config/README.md b/config/README.md
new file mode 100644
index 0000000..caf7a29
--- /dev/null
+++ b/config/README.md
@@ -0,0 +1,8 @@
+# Configuration
+
+This folder is for configurations, like:
+
+- Application configurations
+- Training parameters
+- Script parameters
+- etc.
diff --git a/data/README.md b/data/README.md
new file mode 100644
index 0000000..4e3e520
--- /dev/null
+++ b/data/README.md
@@ -0,0 +1,15 @@
+# Data
+
+This folder can either contain the data directly, or contain symlinks to
+other folders, depending on your environment (Local machine, distributed cluster, etc.)
+
+## Licence Disclaimer
+
+In case some datasets have different license agreements
+
+## Structure
+
+Each dataset have their own READMEs, so make sure to read them!
+
+Current datasets:
+- 
\ No newline at end of file
diff --git a/docs/README.md b/docs/README.md
new file mode 100644
index 0000000..7d55fc4
--- /dev/null
+++ b/docs/README.md
@@ -0,0 +1,3 @@
+# Documentation
+
+This folder is for the eventual ReadTheDocs documentation files.
\ No newline at end of file
diff --git a/environment.yml b/environment.yml
new file mode 100644
index 0000000..4ab4632
--- /dev/null
+++ b/environment.yml
@@ -0,0 +1,6 @@
+name: climateset
+channels:
+  - conda-forge
+dependencies:
+  - python=3.10
+
diff --git a/img/make_targets.png b/img/make_targets.png
new file mode 100644
index 0000000..58c9a2a
Binary files /dev/null and b/img/make_targets.png differ
diff --git a/notebooks/README.md b/notebooks/README.md
new file mode 100644
index 0000000..260fe6c
--- /dev/null
+++ b/notebooks/README.md
@@ -0,0 +1,3 @@
+# Notebooks
+
+Place to store all the project's notebooks
\ No newline at end of file
diff --git a/poetry.lock b/poetry.lock
new file mode 100644
index 0000000..997a335
--- /dev/null
+++ b/poetry.lock
@@ -0,0 +1,2806 @@
+# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand.
+
+[[package]]
+name = "annotated-types"
+version = "0.6.0"
+description = "Reusable constraint types to use with typing.Annotated"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
+    {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
+]
+
+[[package]]
+name = "anyio"
+version = "4.3.0"
+description = "High level compatibility layer for multiple asynchronous event loop implementations"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "anyio-4.3.0-py3-none-any.whl", hash = "sha256:048e05d0f6caeed70d731f3db756d35dcc1f35747c8c403364a8332c630441b8"},
+    {file = "anyio-4.3.0.tar.gz", hash = "sha256:f75253795a87df48568485fd18cdd2a3fa5c4f7c5be8e5e36637733fce06fed6"},
+]
+
+[package.dependencies]
+exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""}
+idna = ">=2.8"
+sniffio = ">=1.1"
+typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""}
+
+[package.extras]
+doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
+test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
+trio = ["trio (>=0.23)"]
+
+[[package]]
+name = "appnope"
+version = "0.1.4"
+description = "Disable App Nap on macOS >= 10.9"
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c"},
+    {file = "appnope-0.1.4.tar.gz", hash = "sha256:1de3860566df9caf38f01f86f65e0e13e379af54f9e4bee1e66b48f2efffd1ee"},
+]
+
+[[package]]
+name = "argon2-cffi"
+version = "23.1.0"
+description = "Argon2 for Python"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "argon2_cffi-23.1.0-py3-none-any.whl", hash = "sha256:c670642b78ba29641818ab2e68bd4e6a78ba53b7eff7b4c3815ae16abf91c7ea"},
+    {file = "argon2_cffi-23.1.0.tar.gz", hash = "sha256:879c3e79a2729ce768ebb7d36d4609e3a78a4ca2ec3a9f12286ca057e3d0db08"},
+]
+
+[package.dependencies]
+argon2-cffi-bindings = "*"
+
+[package.extras]
+dev = ["argon2-cffi[tests,typing]", "tox (>4)"]
+docs = ["furo", "myst-parser", "sphinx", "sphinx-copybutton", "sphinx-notfound-page"]
+tests = ["hypothesis", "pytest"]
+typing = ["mypy"]
+
+[[package]]
+name = "argon2-cffi-bindings"
+version = "21.2.0"
+description = "Low-level CFFI bindings for Argon2"
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "argon2-cffi-bindings-21.2.0.tar.gz", hash = "sha256:bb89ceffa6c791807d1305ceb77dbfacc5aa499891d2c55661c6459651fc39e3"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-macosx_10_9_x86_64.whl", hash = "sha256:ccb949252cb2ab3a08c02024acb77cfb179492d5701c7cbdbfd776124d4d2367"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:9524464572e12979364b7d600abf96181d3541da11e23ddf565a32e70bd4dc0d"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:b746dba803a79238e925d9046a63aa26bf86ab2a2fe74ce6b009a1c3f5c8f2ae"},
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+    {file = "sniffio-1.3.1-py3-none-any.whl", hash = "sha256:2f6da418d1f1e0fddd844478f41680e794e6051915791a034ff65e5f100525a2"},
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+]
+
+[[package]]
+name = "soupsieve"
+version = "2.5"
+description = "A modern CSS selector implementation for Beautiful Soup."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "soupsieve-2.5-py3-none-any.whl", hash = "sha256:eaa337ff55a1579b6549dc679565eac1e3d000563bcb1c8ab0d0fefbc0c2cdc7"},
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+]
+
+[[package]]
+name = "stack-data"
+version = "0.6.3"
+description = "Extract data from python stack frames and tracebacks for informative displays"
+optional = false
+python-versions = "*"
+files = [
+    {file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"},
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+
+[package.dependencies]
+asttokens = ">=2.1.0"
+executing = ">=1.2.0"
+pure-eval = "*"
+
+[package.extras]
+tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
+
+[[package]]
+name = "terminado"
+version = "0.18.1"
+description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "terminado-0.18.1-py3-none-any.whl", hash = "sha256:a4468e1b37bb318f8a86514f65814e1afc977cf29b3992a4500d9dd305dcceb0"},
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+]
+
+[package.dependencies]
+ptyprocess = {version = "*", markers = "os_name != \"nt\""}
+pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""}
+tornado = ">=6.1.0"
+
+[package.extras]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
+test = ["pre-commit", "pytest (>=7.0)", "pytest-timeout"]
+typing = ["mypy (>=1.6,<2.0)", "traitlets (>=5.11.1)"]
+
+[[package]]
+name = "tinycss2"
+version = "1.3.0"
+description = "A tiny CSS parser"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "tinycss2-1.3.0-py3-none-any.whl", hash = "sha256:54a8dbdffb334d536851be0226030e9505965bb2f30f21a4a82c55fb2a80fae7"},
+    {file = "tinycss2-1.3.0.tar.gz", hash = "sha256:152f9acabd296a8375fbca5b84c961ff95971fcfc32e79550c8df8e29118c54d"},
+]
+
+[package.dependencies]
+webencodings = ">=0.4"
+
+[package.extras]
+doc = ["sphinx", "sphinx_rtd_theme"]
+test = ["pytest", "ruff"]
+
+[[package]]
+name = "tomli"
+version = "2.0.1"
+description = "A lil' TOML parser"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
+    {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
+]
+
+[[package]]
+name = "tomlkit"
+version = "0.12.4"
+description = "Style preserving TOML library"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "tomlkit-0.12.4-py3-none-any.whl", hash = "sha256:5cd82d48a3dd89dee1f9d64420aa20ae65cfbd00668d6f094d7578a78efbb77b"},
+    {file = "tomlkit-0.12.4.tar.gz", hash = "sha256:7ca1cfc12232806517a8515047ba66a19369e71edf2439d0f5824f91032b6cc3"},
+]
+
+[[package]]
+name = "tornado"
+version = "6.4"
+description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
+optional = false
+python-versions = ">= 3.8"
+files = [
+    {file = "tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:02ccefc7d8211e5a7f9e8bc3f9e5b0ad6262ba2fbb683a6443ecc804e5224ce0"},
+    {file = "tornado-6.4-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:27787de946a9cffd63ce5814c33f734c627a87072ec7eed71f7fc4417bb16263"},
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+    {file = "tornado-6.4-cp38-abi3-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e43bc2e5370a6a8e413e1e1cd0c91bedc5bd62a74a532371042a18ef19e10579"},
+    {file = "tornado-6.4-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f0251554cdd50b4b44362f73ad5ba7126fc5b2c2895cc62b14a1c2d7ea32f212"},
+    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_aarch64.whl", hash = "sha256:fd03192e287fbd0899dd8f81c6fb9cbbc69194d2074b38f384cb6fa72b80e9c2"},
+    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_i686.whl", hash = "sha256:88b84956273fbd73420e6d4b8d5ccbe913c65d31351b4c004ae362eba06e1f78"},
+    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_x86_64.whl", hash = "sha256:71ddfc23a0e03ef2df1c1397d859868d158c8276a0603b96cf86892bff58149f"},
+    {file = "tornado-6.4-cp38-abi3-win32.whl", hash = "sha256:6f8a6c77900f5ae93d8b4ae1196472d0ccc2775cc1dfdc9e7727889145c45052"},
+    {file = "tornado-6.4-cp38-abi3-win_amd64.whl", hash = "sha256:10aeaa8006333433da48dec9fe417877f8bcc21f48dda8d661ae79da357b2a63"},
+    {file = "tornado-6.4.tar.gz", hash = "sha256:72291fa6e6bc84e626589f1c29d90a5a6d593ef5ae68052ee2ef000dfd273dee"},
+]
+
+[[package]]
+name = "tox"
+version = "4.15.0"
+description = "tox is a generic virtualenv management and test command line tool"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "tox-4.15.0-py3-none-any.whl", hash = "sha256:300055f335d855b2ab1b12c5802de7f62a36d4fd53f30bd2835f6a201dda46ea"},
+    {file = "tox-4.15.0.tar.gz", hash = "sha256:7a0beeef166fbe566f54f795b4906c31b428eddafc0102ac00d20998dd1933f6"},
+]
+
+[package.dependencies]
+cachetools = ">=5.3.2"
+chardet = ">=5.2"
+colorama = ">=0.4.6"
+filelock = ">=3.13.1"
+packaging = ">=23.2"
+platformdirs = ">=4.1"
+pluggy = ">=1.3"
+pyproject-api = ">=1.6.1"
+tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""}
+virtualenv = ">=20.25"
+
+[package.extras]
+docs = ["furo (>=2023.9.10)", "sphinx (>=7.2.6)", "sphinx-argparse-cli (>=1.11.1)", "sphinx-autodoc-typehints (>=1.25.2)", "sphinx-copybutton (>=0.5.2)", "sphinx-inline-tabs (>=2023.4.21)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.11)"]
+testing = ["build[virtualenv] (>=1.0.3)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.2)", "devpi-process (>=1)", "diff-cover (>=8.0.2)", "distlib (>=0.3.8)", "flaky (>=3.7)", "hatch-vcs (>=0.4)", "hatchling (>=1.21)", "psutil (>=5.9.7)", "pytest (>=7.4.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)", "pytest-xdist (>=3.5)", "re-assert (>=1.1)", "time-machine (>=2.13)", "wheel (>=0.42)"]
+
+[[package]]
+name = "traitlets"
+version = "5.14.3"
+description = "Traitlets Python configuration system"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"},
+    {file = "traitlets-5.14.3.tar.gz", hash = "sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7"},
+]
+
+[package.extras]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.2)", "pytest-mock", "pytest-mypy-testing"]
+
+[[package]]
+name = "types-python-dateutil"
+version = "2.9.0.20240316"
+description = "Typing stubs for python-dateutil"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "types-python-dateutil-2.9.0.20240316.tar.gz", hash = "sha256:5d2f2e240b86905e40944dd787db6da9263f0deabef1076ddaed797351ec0202"},
+    {file = "types_python_dateutil-2.9.0.20240316-py3-none-any.whl", hash = "sha256:6b8cb66d960771ce5ff974e9dd45e38facb81718cc1e208b10b1baccbfdbee3b"},
+]
+
+[[package]]
+name = "typing-extensions"
+version = "4.11.0"
+description = "Backported and Experimental Type Hints for Python 3.8+"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"},
+    {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"},
+]
+
+[[package]]
+name = "uri-template"
+version = "1.3.0"
+description = "RFC 6570 URI Template Processor"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7"},
+    {file = "uri_template-1.3.0-py3-none-any.whl", hash = "sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363"},
+]
+
+[package.extras]
+dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake8-commas", "flake8-comprehensions", "flake8-continuation", "flake8-datetimez", "flake8-docstrings", "flake8-import-order", "flake8-literal", "flake8-modern-annotations", "flake8-noqa", "flake8-pyproject", "flake8-requirements", "flake8-typechecking-import", "flake8-use-fstring", "mypy", "pep8-naming", "types-PyYAML"]
+
+[[package]]
+name = "urllib3"
+version = "2.2.1"
+description = "HTTP library with thread-safe connection pooling, file post, and more."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "urllib3-2.2.1-py3-none-any.whl", hash = "sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d"},
+    {file = "urllib3-2.2.1.tar.gz", hash = "sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19"},
+]
+
+[package.extras]
+brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
+h2 = ["h2 (>=4,<5)"]
+socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
+zstd = ["zstandard (>=0.18.0)"]
+
+[[package]]
+name = "virtualenv"
+version = "20.26.0"
+description = "Virtual Python Environment builder"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "virtualenv-20.26.0-py3-none-any.whl", hash = "sha256:0846377ea76e818daaa3e00a4365c018bc3ac9760cbb3544de542885aad61fb3"},
+    {file = "virtualenv-20.26.0.tar.gz", hash = "sha256:ec25a9671a5102c8d2657f62792a27b48f016664c6873f6beed3800008577210"},
+]
+
+[package.dependencies]
+distlib = ">=0.3.7,<1"
+filelock = ">=3.12.2,<4"
+platformdirs = ">=3.9.1,<5"
+
+[package.extras]
+docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
+test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"]
+
+[[package]]
+name = "wcwidth"
+version = "0.2.13"
+description = "Measures the displayed width of unicode strings in a terminal"
+optional = false
+python-versions = "*"
+files = [
+    {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"},
+    {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"},
+]
+
+[[package]]
+name = "webcolors"
+version = "1.13"
+description = "A library for working with the color formats defined by HTML and CSS."
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "webcolors-1.13-py3-none-any.whl", hash = "sha256:29bc7e8752c0a1bd4a1f03c14d6e6a72e93d82193738fa860cbff59d0fcc11bf"},
+    {file = "webcolors-1.13.tar.gz", hash = "sha256:c225b674c83fa923be93d235330ce0300373d02885cef23238813b0d5668304a"},
+]
+
+[package.extras]
+docs = ["furo", "sphinx", "sphinx-copybutton", "sphinx-inline-tabs", "sphinx-notfound-page", "sphinxext-opengraph"]
+tests = ["pytest", "pytest-cov"]
+
+[[package]]
+name = "webencodings"
+version = "0.5.1"
+description = "Character encoding aliases for legacy web content"
+optional = false
+python-versions = "*"
+files = [
+    {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"},
+    {file = "webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"},
+]
+
+[[package]]
+name = "websocket-client"
+version = "1.8.0"
+description = "WebSocket client for Python with low level API options"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "websocket_client-1.8.0-py3-none-any.whl", hash = "sha256:17b44cc997f5c498e809b22cdf2d9c7a9e71c02c8cc2b6c56e7c2d1239bfa526"},
+    {file = "websocket_client-1.8.0.tar.gz", hash = "sha256:3239df9f44da632f96012472805d40a23281a991027ce11d2f45a6f24ac4c3da"},
+]
+
+[package.extras]
+docs = ["Sphinx (>=6.0)", "myst-parser (>=2.0.0)", "sphinx-rtd-theme (>=1.1.0)"]
+optional = ["python-socks", "wsaccel"]
+test = ["websockets"]
+
+[metadata]
+lock-version = "2.0"
+python-versions = ">=3.10,<3.12"
+content-hash = "735d50e364ae97432e6f9f7e3dff976372b14a245a7673df9479680c37d494cc"
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 0000000..f278f25
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,117 @@
+[tool.poetry]
+name = "climateset"
+version = "0.0.0"
+description = ""
+authors = ["f-PLT <fplt.softwaredeveloper@gmail.com>"]
+readme = "README.md"
+
+[tool.poetry.dependencies]
+python = ">=3.10,<3.12"
+
+
+[tool.poetry.group.dev]
+optional = true
+
+[tool.poetry.group.dev.dependencies]
+pytest = "^7.4.4"
+pylint = "^3.0.3"
+black = "^23.12.1"
+isort = "^5.13.2"
+bump-my-version = "^0.16.2"
+tox = "^4.12.0"
+flynt = "^1.0.1"
+flake8 = "^7.0.0"
+pre-commit = "^3.7.0"
+flake8-pyproject = "^1.2.3"
+
+[tool.poetry.group.lab]
+optional = true
+
+[tool.poetry.group.lab.dependencies]
+jupyterlab = "^4.0.10"
+notebook = "^7.0.6"
+jupyterlab-lsp = "^5.0.1"
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"
+
+#
+# Scripts
+#
+[tool.poetry.scripts]
+
+#
+# Tools
+#
+[tool.bumpversion]
+current_version = "0.0.0"
+commit = true
+message = "Version {new_version} released."
+tag = true
+tag_name = "{new_version}"
+parse = '(?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+) (?P<releaseTime>.*)?'
+serialize = [
+    "{major}.{minor}.{patch}",
+    "{utcnow:%Y-%m-%dT%H:%M:%SZ}"
+]
+
+[[tool.bumpversion.files]]
+filename = "pyproject.toml"
+search = 'version = "{current_version}"'
+replace = 'version = "{new_version}"'
+
+[[tool.bumpversion.files]]
+filename = "Makefile"
+search = "APP_VERSION := {current_version}"
+replace = "APP_VERSION := {new_version}"
+
+[[tool.bumpversion.files]]
+filename = "CHANGES.md"
+search = '''
+[Unreleased](https://github.com/RolnickLab/ClimateSetExtension/tree/main) (latest)
+-------------------------------------------------------------------------------------
+'''
+replace = '''
+[Unreleased](https://github.com/RolnickLab/ClimateSetExtension/tree/main) (latest)
+-------------------------------------------------------------------------------------
+
+[//]: # (New changes here in list form)
+
+[{new_version}](https://github.com/RolnickLab/ClimateSetExtension/tree/{new_version}) ({utcnow:%Y-%m-%d})
+-------------------------------------------------------------------------------------
+'''
+
+[tool.pylint]
+disable = "C0114,C0115,C0116,R0903,R1710"
+max-line-length = 120
+
+[tool.flake8]
+max-line-length = 120
+ignore = ["E203", "E266", "E501", "W503"]
+docstring-convention = "numpy"
+max-complexity = 18
+per-file-ignores = []
+exclude = [
+    ".git",
+    "migrations",
+    "__pycache__"
+]
+
+[tool.black]
+line-length = 120
+target-version = ["py310"]
+
+[tool.isort]
+profile = "black"
+
+[tool.flynt]
+line-length = 120
+transform-concats = true
+verbose = true
+
+[tool.pytest.ini_options]
+testpaths = [
+    "tests",
+]
+markers = ["offline: mark a test as needing to be run offline.", ]
\ No newline at end of file
diff --git a/scripts/README.md b/scripts/README.md
new file mode 100644
index 0000000..e69de29
diff --git a/scripts/config.sh.example b/scripts/config.sh.example
new file mode 100644
index 0000000..a6c2adf
--- /dev/null
+++ b/scripts/config.sh.example
@@ -0,0 +1,34 @@
+#!/usr/bin/env bash
+
+# This script can be configured with paths exclusive to your own development environment
+# and then sourced in other scripts, so that many people can use the same scripts
+# in different environments.
+#
+# With this, we want to avoid relative paths (as they can change/break easily)
+# and hard-coded paths in the code itself. A repository is installed in a
+# different path for each person in a given project. We want people to be able
+# to use the same scripts instead of replicating them with personalized hard-coded paths
+#
+# For example:
+#
+# - config.sh
+#   #!/usr/bin/env bash
+#
+#   export PROJECT_DIR="<FULL_PATH_TO_YOUR_PROJECT_DIR>"
+#
+# - some-script.sh
+#   #!/usr/bin/env bash
+#
+#   module load miniconda/3
+#   conda activate <PROJECT_ENVIRONMENT>
+#
+#   source config.sh
+#
+#   cd "$PROJECT_DIR" || exit
+#
+#   params_file="${PROJECT_DIR}/RELEVANT/PATH/TO/SOMEWHERE/FILE.yml"
+#
+#   python3 some_script.py params_file
+
+
+export PROJECT_DIR="<FULL_PATH_TO_YOUR_PROJECT_DIR>"
diff --git a/tests/__init__.py b/tests/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/tox.ini b/tox.ini
new file mode 100644
index 0000000..f63637c
--- /dev/null
+++ b/tox.ini
@@ -0,0 +1,54 @@
+[tox]
+isolated_build = true
+basepython = py310
+envlist = precommit
+skipsdist = true
+
+[isort]
+profile = black
+
+[testenv]
+allowlist_externals  = poetry
+commands_pre =
+    poetry install
+
+file_and_folder_all = climateset/ tests/ scripts/
+file_and_folder_scripts_modules = climateset/ scripts/
+
+[testenv:pylint]
+commands =
+    poetry run pylint {[testenv]file_and_folder_scripts_modules}
+
+[testenv:flake8]
+commands =
+    poetry run flake8 {[testenv]file_and_folder_scripts_modules}
+
+[testenv:fix]
+commands =
+    poetry run black {[testenv]file_and_folder_all}
+    poetry run isort {[testenv]file_and_folder_all}
+    poetry run flynt {[testenv]file_and_folder_all}
+
+[testenv:precommit]
+commands =
+    poetry run pre-commit run --all-files
+
+[testenv:black]
+commands = 
+    poetry run black --check {[testenv]file_and_folder_all}
+    
+[testenv:isort]
+commands = 
+    poetry run isort {[testenv]file_and_folder_all} --check
+
+[testenv:flynt]
+commands = 
+    poetry run flynt {[testenv]file_and_folder_all}
+
+[testenv:test]
+commands =
+    poetry run pytest
+
+[testenv:test-custom]
+commands =
+    poetry run pytest {posargs}
\ No newline at end of file