Renames non polarised TF to normal TF

Author: StephenNneji

API/createProject.m

@@ -7,10 +7,10 @@
     % absorption terms are included in the refractive index.
     % All of the arguments are optional.
     %
-    % project = createProject(name='New experiment', calc='non polarised');
+    % project = createProject(name='New experiment', calc='normal');
     arguments
         options.name {mustBeTextScalar} = ''
-        options.calcType = calculationTypes.NonPolarised
+        options.calcType = calculationTypes.Normal
         options.model = modelTypes.StandardLayers
         options.geometry = geometryOptions.AirSubstrate
         options.absorption {mustBeA(options.absorption,'logical')} = false

API/enums/calculationTypes.m

@@ -14,7 +14,7 @@
     end
 
     enumeration
-        NonPolarised ('non polarised')
+        Normal ('normal')
         Domains ('domains')
         OilWater ('oil water')
         Magnetic ('magnetic')

API/makeEmptyResultStruct.m

@@ -4,7 +4,7 @@
     %
     % nParams = number of fitted parameters
     % nContrasts = number of contrasts
-    % nDomains = number of domains - 1 for non-polarised, 2 for domains
+    % nDomains = number of domains - 1 for normal, 2 for domains
     %
     % result = 
     % 

API/projectClass/domainsClass.m

@@ -53,10 +53,10 @@
             % Alias of the converter routine from domainsClass to
             % projectClass.
             % This routine takes the currently defined project and
-            % converts it to a nonPolarised calculation, preserving all
+            % converts it to a normal calculation, preserving all
             % currently defined properties.
             %
-            % nonPolarisedProject = project.toProjectClass();
+            % normalProject = project.toProjectClass();
             projectObj = obj.projectClass();
         end
 
@@ -245,11 +245,11 @@
         function projectObj = projectClass(obj)
             % Converter routine from domainsClass to projectClass.
             % This routine takes the currently defined project and
-            % converts it to a nonPolarised calculation, preserving all
+            % converts it to a normal calculation, preserving all
             % currently defined properties.
             %
-            % nonPolarisedProject = project.projectClass();
-            projectObj = projectClass(obj.experimentName, calculationTypes.NonPolarised, obj.modelType, obj.geometry, obj.absorption);
+            % normalProject = project.projectClass();
+            projectObj = projectClass(obj.experimentName, calculationTypes.Normal, obj.modelType, obj.geometry, obj.absorption);
             projectObj = copyProperties(obj, projectObj);
 
             % Need to treat contrasts separately due to changes in the

API/projectClass/projectClass.m

@@ -64,7 +64,7 @@
             % project = projectClass('New experiment');
             arguments
                 experimentName {mustBeTextScalar} = ''
-                calculationType = calculationTypes.NonPolarised
+                calculationType = calculationTypes.Normal
                 modelType = modelTypes.StandardLayers
                 geometry = geometryOptions.AirSubstrate
                 absorption {mustBeA(absorption,'logical')} = false

examples/domains/README.md

@@ -2,7 +2,7 @@
 
 
 % Set up the initial project....
-problem = createProject(name = 'DPPC_50_3pcBins', calcType = 'non polarised',...
+problem = createProject(name = 'DPPC_50_3pcBins', calcType = 'normal',...
     model = 'custom layers', geometry = 'substrate/liquid', absorption = true);
 
 % Add the required parameters (substrate reference as already there by default)....

examples/miscellaneous/absorption/absorptionDPPC50.m

@@ -1,7 +1,7 @@
 % Standard Layers fit of a DSPC floating bilayer
 
 % Make the project
-problem = createProject(name='original_dspc_bilayer', calcType='non polarised', model='standard layers', geometry='substrate/liquid', absorption=false);
+problem = createProject(name='original_dspc_bilayer', calcType='normal', model='standard layers', geometry='substrate/liquid', absorption=false);
 
 % Make priors visible
 problem.showPriors(true);

examples/miscellaneous/backgroundTypes/DSPCScriptWithDataBackground.m

@@ -1,7 +1,7 @@
 % Standard Layers fit of a DSPC floating bilayer
 
 % Make the project
-problem = createProject(name='original_dspc_bilayer', calcType='non polarised', model='standard layers', geometry='substrate/liquid', absorption=false);
+problem = createProject(name='original_dspc_bilayer', calcType='normal', model='standard layers', geometry='substrate/liquid', absorption=false);
 
 % Make priors visible
 problem.showPriors(true);