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put back qvalue calculation after permutation step #16

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jackhump opened this issue Apr 29, 2021 · 1 comment
Open

put back qvalue calculation after permutation step #16

jackhump opened this issue Apr 29, 2021 · 1 comment

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@jackhump
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Currently users have to manually append the qval column.

There is an R script to do this called interaction_qvalue.R. It needs fixing as currently it tries to work on interaction QTL results only. Make this work @bzmull !
@jackhump
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so if a normal QTL run then make qvalues of "pval_perm"

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