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cluster.yaml
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cluster.yaml
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__default__:
queue: express
cores: 1
mem: 8000
time: '12:00'
name: $(basename $(pwd)):{rule}:{wildcards}
output: logs/{rule}:{wildcards}.stdout
error: logs/{rule}:{wildcards}.stderr
gpuString: ""
himem: ""
createGCTFiles:
mem: 8000
prepareExpression:
cores: 2
mem: 4000
prepareSplicing:
cores: 2
mem: 4000
prepareEditing:
cores: 2
mem: 4000
prepareTranscriptExpression:
cores: 2
mem: 4000
runPEER:
queue: premium
cores: 1
time: 144:00
tensorQTL_cis:
cores: 2
queue: premium
mem: 8000
time: 144:00
tensorQTL_cis_nominal:
cores: 2
queue: premium
mem: 8000
time: 144:00
tensorQTL_trans:
cores: 2
queue: premium
mem: 8000
time: 144:00
tensorQTL_cis_interaction:
cores: 2
queue: premium
mem: 8000
time: 144:00
tensorQTL_insteraction_trans:
cores: 2
queue: premium
mem: 8000
time: 144:00
tensorQTL_cis_independent:
cores: 2
queue: premium
mem: 8000
time: 144:00
mergeNominalResult:
cores: 1
mem: 12000
mergeNominalResult_interaction:
cores: 1
mem: 12000
## copied from Shea - this shows how to set rule-specific cluster parameters