numpy error: Multi-dimensional indexing (e.g. obj[:, None]) is no longer supported

[Mira2121]

Thank you for the code.
I have installed it using conda and the environment.yml provided for mdmtaskweb. When running calc_network.py, the following is the error i'm getting:

INFO::Calculating centralities...
INFO::Progress: 1 frames completed
ERROR::type=general:frame=1:exception=<class 'Exception'>
Multi-dimensional indexing (e.g. obj[:, None]) is no longer supported. Convert to a numpy array before indexing instead.

I see from the earlier code: "https://github.com/RUBi-ZA/MD-TASK/blame/e03934e733dca7ee97e131338c4f4d69a3e91b64/calc_network.py" - error due to numpy was addressed. Not sure why i'm getting this error...

[oliserand]

Dear @Mira2121

Thanks for using MD-TASK. Could you please try the new code from the mdm-task-web branch found here? Let me know how it goes.

Kind regards,
Olivier

[Mira2121]

Hi Olivier,
Yep i used the new code https://github.com/RUBi-ZA/MD-TASK/blob/mdm-task-web/src/calc_network.py. Installed mdmtaskweb with "conda env create -f environment.yml". Not sure why getting this error :(

[oliserand]

Dear @Mira2121

Just to be sure - you activated the environment also, right?

Thanks,
Olivier