Does FABind+ output some binding affinity or confidence score in the result?

[zhq90]

Does FABind+ provide a binding affinity or confidence score in its output to evaluate ligand-protein interactions?

[KyGao]

FABind+ doesn't have a module that's directly trained to predict binding affinity. However, we do provide a pre-trained confidence score head (available in confidence_model.bin). You can refer to the inference script here for details. During inference, you can control whether to sample multiple pockets/conformations using the --use-clustering and --infer-dropout parameters.