[repo-helper] Configuration Update (#39)

* Updated files with 'repo_helper'.

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: repo-helper[bot] <74742576+repo-helper[bot]@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Author: repo-helper[bot]

.github/workflows/docs_test_action.yml

@@ -29,7 +29,7 @@ jobs:
               - '!tests/**'
 
       - name: Install and Build 🔧
-        uses: sphinx-toolbox/[email protected]
+        uses: sphinx-toolbox/[email protected]-py39
         if: steps.changes.outputs.code == 'true'
         with:
           pre-build-command: python -m pip install tox

.github/workflows/octocheese.yml

@@ -6,6 +6,9 @@ on:
   schedule:
     - cron: 0 12 * * *
 
+permissions:
+  contents: write
+
 jobs:
   Run:
     runs-on: ubuntu-latest

.github/workflows/python_ci_linux.yml

@@ -161,11 +161,11 @@ jobs:
 
       - name: Upload distribution to PyPI 🚀
         if: startsWith(github.ref, 'refs/tags/')
-        uses: pypa/gh-action-pypi-publish@v1.4.2
+        uses: pypa/gh-action-pypi-publish@v1.13.0
         with:
           user: __token__
           password: ${{ secrets.PYPI_TOKEN }}
-          skip_existing: true
+          skip-existing: true
 
       - name: Close milestone 🚪
         if: startsWith(github.ref, 'refs/tags/')

.github/workflows/python_ci_macos.yml

@@ -28,7 +28,7 @@ jobs:
       fail-fast: False
       matrix:
         config:
-          - {python-version: "3.7", os-ver: "13", testenvs: "py37,build", experimental: False}
+          - {python-version: "3.7", os-ver: "15-intel", testenvs: "py37,build", experimental: False}
           - {python-version: "3.8", os-ver: "14", testenvs: "py38,build", experimental: False}
           - {python-version: "3.9", os-ver: "14", testenvs: "py39,build", experimental: False}
           - {python-version: "3.10", os-ver: "14", testenvs: "py310,build", experimental: False}

.gitignore

@@ -47,7 +47,6 @@ docs/_build/
 doc/build
 target/
 .ipynb_checkpoints
-.python-version
 celerybeat-schedule
 celerybeat.pid
 *.sage.py

.pre-commit-config.yaml

@@ -8,7 +8,7 @@ ci:
 
 repos:
  - repo: https://github.com/repo-helper/pyproject-parser
-   rev: v0.13.0
+   rev: v0.14.0
    hooks:
     - id: reformat-pyproject
 
@@ -43,7 +43,7 @@ repos:
     - id: bind-requirements
 
  - repo: https://github.com/python-formate/flake8-dunder-all
-   rev: v0.4.1
+   rev: v0.5.0
    hooks:
     - id: ensure-dunder-all
       files: ^pymassspec_plot/.*\.py$
@@ -62,11 +62,11 @@ repos:
     - id: rst-inline-touching-normal
 
  - repo: https://github.com/asottile/pyupgrade
-   rev: v2.12.0
+   rev: v3.3.0
    hooks:
     - id: pyupgrade
       args:
-       - --py36-plus
+       - --py37-plus
        - --keep-runtime-typing
 
  - repo: https://github.com/Lucas-C/pre-commit-hooks

README.rst

@@ -109,7 +109,7 @@ PyMassSpec-Plot
 	:target: https://github.com/PyMassSpec/PyMassSpec-Plot/commit/master
 	:alt: GitHub last commit
 
-.. |maintained| image:: https://img.shields.io/maintenance/yes/2025
+.. |maintained| image:: https://img.shields.io/maintenance/yes/2026
 	:alt: Maintenance
 
 .. |pypi-downloads| image:: https://img.shields.io/pypi/dm/PyMassSpec-Plot

doc-source/index.rst

@@ -114,7 +114,7 @@ PyMassSpec-Plot
 		:last-commit:
 		:alt: GitHub last commit
 
-	.. |maintained| maintained-shield:: 2025
+	.. |maintained| maintained-shield:: 2026
 		:alt: Maintenance
 
 	.. |pypi-downloads| pypi-shield::

doc-source/requirements.txt

@@ -1,7 +1,9 @@
 default-values>=0.6.0
+docutils<0.22
 extras-require>=0.5.0
 furo==2021.06.18b36
 html-section>=0.3.0
+roman>=4.0
 seed-intersphinx-mapping>=1.2.2
 sphinx>=3.0.3
 sphinx-copybutton>=0.2.12

formate.toml

@@ -27,19 +27,6 @@ lines_between_types = 0
 use_parentheses = true
 remove_redundant_aliases = true
 default_section = "THIRDPARTY"
-known_third_party = [
-    "coincidence",
-    "coverage",
-    "coverage_pyver_pragma",
-    "importlib_metadata",
-    "matplotlib",
-    "pymassspec",
-    "pytest",
-    "pytest_cov",
-    "pytest_mpl",
-    "pytest_randomly",
-    "pytest_timeout",
-]
 known_first_party = [ "pymassspec_plot",]
 
 [config]