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The code\r\nuses BraTS, and conditions on binary brain masks.\r\n\r\n### Description\r\nA few sentences describing the changes proposed in this pull request.\r\n\r\n### Checks\r\n<!--- Put an `x` in all the boxes that apply, and remove the not\r\napplicable items -->\r\n- [X] Avoid including large-size files in the PR.\r\n- [X] Clean up long text outputs from code cells in the notebook.\r\n- [X] For security purposes, please check the contents and remove any\r\nsensitive info such as user names and private key.\r\n- [X ] Ensure (1) hyperlinks and markdown anchors are working (2) use\r\nrelative paths for tutorial repo files (3) put figure and graphs in the\r\n`./figure` folder\r\n- [X] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`\r\n\r\n---------\r\n\r\nSigned-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>\r\nCo-authored-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>","shortMessageHtmlLink":"Porting of 2D ControlNet tutorial using DDPM and ControlNet to guide …"}},{"before":"b5766e5ea4574fdca5904f4e76b149126f4ade7f","after":"9491b4bd731a0f354f4fe5da68717a6c29270680","ref":"refs/heads/main","pushedAt":"2024-09-06T14:08:13.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ericspod","name":"Eric Kerfoot","path":"/ericspod","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17726042?s=80&v=4"},"commit":{"message":"Adding VQVAE/VQGAN Tutorials (#1817)\n\nAddress some of #1769.\r\n\r\n### Description\r\nThis adds a few more tutorials from the GenerativeModels Repo\r\n\r\n### Checks\r\n<!--- Put an `x` in all the boxes that apply, and remove the not\r\napplicable items -->\r\n- [ ] Avoid including large-size files in the PR.\r\n- [ ] Clean up long text outputs from code cells in the notebook.\r\n- [ ] For security purposes, please check the contents and remove any\r\nsensitive info such as user names and private key.\r\n- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use\r\nrelative paths for tutorial repo files (3) put figure and graphs in the\r\n`./figure` folder\r\n- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`\r\n\r\n---------\r\n\r\nSigned-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk>\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>","shortMessageHtmlLink":"Adding VQVAE/VQGAN Tutorials (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2508909190\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Project-MONAI/tutorials/issues/1817\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Project-MONAI/tutorials/pull/1817/hovercard\" href=\"https://github.com/Project-MONAI/tutorials/pull/1817\">#1817</a>)"}},{"before":"cb81ed26edcca67e75f45c58b4ab61c9a615a583","after":"b5766e5ea4574fdca5904f4e76b149126f4ade7f","ref":"refs/heads/main","pushedAt":"2024-09-06T11:33:36.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ericspod","name":"Eric Kerfoot","path":"/ericspod","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17726042?s=80&v=4"},"commit":{"message":"DDPM Tutorials (#1814)\n\nAddress some of #1769.\r\n\r\n### Description\r\nThese are the 2D ~~and 3D~~ DDPM tutorials. 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Work\r\nis ongoing on this one.~~ I have left the 3D tutorial off since it's not\r\ntraining stably and needs some revamp to be a proper and useful tutorial\r\nfor users.\r\n\r\n### Checks\r\n<!--- Put an `x` in all the boxes that apply, and remove the not\r\napplicable items -->\r\n- [x] Avoid including large-size files in the PR.\r\n- [x] Clean up long text outputs from code cells in the notebook.\r\n- [x] For security purposes, please check the contents and remove any\r\nsensitive info such as user names and private key.\r\n- [x] Ensure (1) hyperlinks and markdown anchors are working (2) use\r\nrelative paths for tutorial repo files (3) put figure and graphs in the\r\n`./figure` folder\r\n- [x] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`\r\n\r\n---------\r\n\r\nSigned-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk>\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: YunLiu 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security purposes, please check the contents and remove any\r\nsensitive info such as user names and private key.\r\n- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use\r\nrelative paths for tutorial repo files (3) put figure and graphs in the\r\n`./figure` folder\r\n- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`\r\n\r\nSigned-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>","shortMessageHtmlLink":"Fix typo (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2504713233\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Project-MONAI/tutorials/issues/1813\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Project-MONAI/tutorials/pull/1813/hovercard\" 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working (2) use\r\nrelative paths for tutorial repo files (3) put figure and graphs in the\r\n`./figure` folder\r\n- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`\r\n\r\n---------\r\n\r\nSigned-off-by: Vishwesh Nath <vnath@nvidia.com>\r\nSigned-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>\r\nCo-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>","shortMessageHtmlLink":"Vista 2D | Edits etc. (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2504271003\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Project-MONAI/tutorials/issues/1812\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Project-MONAI/tutorials/pull/1812/hovercard\" 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use\r\nrelative paths for tutorial repo files (3) put figure and graphs in the\r\n`./figure` folder\r\n- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`\r\n\r\n---------\r\n\r\nSigned-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>","shortMessageHtmlLink":"refactor learn2reg_nlst_paired_lung_ct (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2502170131\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Project-MONAI/tutorials/issues/1809\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Project-MONAI/tutorials/pull/1809/hovercard\" href=\"https://github.com/Project-MONAI/tutorials/pull/1809\">#1809</a>)"}},{"before":"126c99ca662bd6ae1d67e773cdcc6b5e2fcd5cec","after":"0e25eada7aa15834e5724f50df4661fb0765a7af","ref":"refs/heads/main","pushedAt":"2024-09-03T12:49:37.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"KumoLiu","name":"YunLiu","path":"/KumoLiu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55491388?s=80&v=4"},"commit":{"message":"Fix KeyError in ./pathology/tumor_detection/ignite/profiling_camelyon_pipeline.ipynb (#1811)\n\nFixes #1810\r\n\r\nFix KeyError in\r\n./pathology/tumor_detection/ignite/profiling_camelyon_pipeline.ipynb\r\n\r\n### Checks\r\n<!--- Put an `x` in all the boxes that apply, and remove the not\r\napplicable items -->\r\n- [ ] Avoid including large-size files in the PR.\r\n- [ ] Clean up long text outputs from code cells in the notebook.\r\n- [ ] For security purposes, please check the contents and remove any\r\nsensitive info such as user names and private key.\r\n- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use\r\nrelative paths for tutorial repo files (3) put figure and graphs in the\r\n`./figure` folder\r\n- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`\r\n\r\n---------\r\n\r\nSigned-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>","shortMessageHtmlLink":"Fix KeyError in ./pathology/tumor_detection/ignite/profiling_camelyon…"}},{"before":"e69c10de91278b4d90f65ce5227937372f19a50d","after":"126c99ca662bd6ae1d67e773cdcc6b5e2fcd5cec","ref":"refs/heads/main","pushedAt":"2024-09-02T16:05:21.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"KumoLiu","name":"YunLiu","path":"/KumoLiu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55491388?s=80&v=4"},"commit":{"message":"ADd vista3d tutorial (#1799)\n\nFixes # .\r\n\r\n### Description\r\nA few sentences describing the changes proposed in this pull request.\r\n\r\n### Checks\r\n<!--- Put an `x` in all the boxes that apply, and remove the not\r\napplicable items -->\r\n- [ ] Avoid including large-size files in the PR.\r\n- [ ] Clean up long text outputs from code cells in the notebook.\r\n- [ ] For security purposes, please check the contents and remove any\r\nsensitive info such as user names and private key.\r\n- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use\r\nrelative paths for tutorial repo files (3) put figure and graphs in the\r\n`./figure` folder\r\n- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`\r\n\r\n---------\r\n\r\nSigned-off-by: heyufan1995 <heyufan1995@gmail.com>\r\nSigned-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>","shortMessageHtmlLink":"ADd vista3d tutorial (<a 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items -->\r\n- [ ] Avoid including large-size files in the PR.\r\n- [ ] Clean up long text outputs from code cells in the notebook.\r\n- [ ] For security purposes, please check the contents and remove any\r\nsensitive info such as user names and private key.\r\n- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use\r\nrelative paths for tutorial repo files (3) put figure and graphs in the\r\n`./figure` folder\r\n- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`\r\n\r\n---------\r\n\r\nSigned-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>","shortMessageHtmlLink":"Jupytext (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2499951665\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Project-MONAI/tutorials/issues/1808\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Project-MONAI/tutorials/pull/1808/hovercard\" 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Due to\r\nsome problems with the dataset that was being used, I have replaced it\r\nwith a subset of BraTS that is currently sitting on my gdrive account\r\n(it's about 25MB). This was necessary because the tutorials need\r\nsemantic coverage for grey and white matter, CSF etc. which is currently\r\nnot present in the brain tumour dataset hosted from MONAI.\r\n\r\n### Checks\r\n<!--- Put an `x` in all the boxes that apply, and remove the not\r\napplicable items -->\r\n- [x] Avoid including large-size files in the PR.\r\n- [ ] Clean up long text outputs from code cells in the notebook.\r\n- [x] For security purposes, please check the contents and remove any\r\nsensitive info such as user names and private key.\r\n- [x] Ensure (1) hyperlinks and markdown anchors are working (2) use\r\nrelative paths for tutorial repo files (3) put figure and graphs in the\r\n`./figure` folder\r\n- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`\r\n\r\n---------\r\n\r\nSigned-off-by: Virginia Fernandez <virginia.fernandez@kcl.ac.uk>\r\nSigned-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk>\r\nSigned-off-by: YunLiu 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