C2_read_swabian_headers.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "69168e7b-079e-4756-8860-4edbb7fd8c9b",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "markdown",
   "id": "df5322a2-7cb7-4eca-addb-cdd07fdce855",
   "metadata": {},
   "source": [
    "# env: swabian"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "dc03e697-0c89-41cc-99a8-1b58353fb2e0",
   "metadata": {},
   "outputs": [],
   "source": [
    "import os"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "7787b798-541b-46d9-a3d8-736ec9a30f5c",
   "metadata": {},
   "outputs": [],
   "source": [
    "import TimeTagger as TT\n",
    "from TimeTagger import Flim, TimeTagStream, createTimeTaggerVirtual, EventGenerator, Countrate,ConstantFractionDiscriminator, DelayedChannel\n",
    "#from intensity_renderer import IntensityRenderer\n",
    "import numpy as np\n",
    "from matplotlib.pyplot import *\n",
    "from scipy.ndimage import maximum_filter"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "id": "58c4396b-0335-4a6a-aa1f-7b8847c5e000",
   "metadata": {},
   "outputs": [],
   "source": [
    "#dump_file = r\"C:\\Users\\lociu\\Desktop\\PriyaM\\Data\\20230703_swab_tests\\TimeTags_2023-07-03_125136.ttbin\"\n",
    "dump_file= r'C:\\Users\\lociu\\Desktop\\PriyaM\\Data\\20230711_\\CYCLE_000001_RAWDATA_000034.ttbin'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "da524549-74a4-44c9-aa25-387efa637660",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "CPU times: total: 312 ms\n",
      "Wall time: 397 ms\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "b'\\x00\\x00\\x00\\x00\\xfc\\xff\\xff\\xff\\x0ck\\xcd$\\xd4\\xf6;\\x00\\x00\\x00\\x00\\x00\\xf5\\x03\\x00\\x00\\xe3m\\xcd$\\xd4\\xf6;\\x00\\x00\\x00\\x00\\x00\\x04\\x00\\x00\\x00\\xb9p\\xcd$\\xd4\\xf6;\\x00\\x00\\x00\\x00\\x00\\x03\\x00\\x00\\x00\\xd2\\x85\\xcd$\\xd4\\xf6;\\x00\\x00\\x00\\x00\\x00\\xfb\\xff\\xff\\xff\\x04\\x0e\\x124\\xd4\\xf6;\\x00\\x00\\x00\\x00\\x00\\x03\\x00\\x00\\x00\\x10\\x11\\x124\\xd4\\xf6;\\x00\\x00\\x00\\x00\\x00'"
      ]
     },
     "execution_count": 9,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "%%time\n",
    "with open(dump_file,'rb') as fid:\n",
    "    d = fid.read()    \n",
    "d[:100]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "3f46ac24-673d-42a3-a2ed-a93f8fd1c963",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "id": "fa95a5d3-5f83-4813-8f5b-30d06077e63c",
   "metadata": {},
   "outputs": [],
   "source": [
    "fr = TT.FileReader(dump_file,)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "id": "413981ff-3802-467e-ac83-822bb16a43e3",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "{'channel number scheme': 2,\n",
       " 'configure version': 1,\n",
       " 'current time': '2023-07-03 12:51:36 -0500',\n",
       " 'devices': [{'PCB version': '1.6b (1)',\n",
       "   'model': 'Time Tagger Ultra',\n",
       "   'serial': '2143000XZI'}],\n",
       " 'firmware version': 'TT-Ultra, FW 5, TS 2022-02-02 13:09:16, OK 1.31',\n",
       " 'fpga link': {'enabled': False},\n",
       " 'hardware buffer size': 67108864,\n",
       " 'inputs': [{'channel': [1, -1],\n",
       "   'conditional filter filtered': [True, False],\n",
       "   'conditional filter triggers': [False, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [552, 552],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': -0.05},\n",
       "  {'channel': [2, -2],\n",
       "   'conditional filter filtered': [False, False],\n",
       "   'conditional filter triggers': [False, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [1210, 1210],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': 2.0},\n",
       "  {'channel': [3, -3],\n",
       "   'conditional filter filtered': [False, False],\n",
       "   'conditional filter triggers': [False, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [1458, 1458],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': 2.0},\n",
       "  {'channel': [4, -4],\n",
       "   'conditional filter filtered': [False, False],\n",
       "   'conditional filter triggers': [True, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [324, 324],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': -0.02}],\n",
       " 'led bitmask': 0,\n",
       " 'led disable': False,\n",
       " 'measurements': [{'name': 'Histogram',\n",
       "   'params': {'binwidth': 100,\n",
       "    'click channel': 4,\n",
       "    'n bins': 125,\n",
       "    'start channel': 1},\n",
       "   'registered channels': [1, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'Counter',\n",
       "   'params': {'binwidth': 20000000000, 'channels': [1, 4], 'n values': 100},\n",
       "   'registered channels': [1, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'Countrate',\n",
       "   'params': {'channels': [1, 2, 3, 4]},\n",
       "   'registered channels': [1, 2, 3, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'Countrate',\n",
       "   'params': {'channels': [1, 2, 3, 4]},\n",
       "   'registered channels': [1, 2, 3, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'FileWriter',\n",
       "   'params': {'channels': [1, 2, 3, 4, -4],\n",
       "    'filename': 'C:\\\\Users\\\\lociuser\\\\Documents\\\\Time Tagger Lab\\\\Time Tag Files\\\\TimeTags_2023-07-03_125136.ttbin'},\n",
       "   'registered channels': [-4, 1, 2, 3, 4],\n",
       "   'virtual channels': []}],\n",
       " 'network': {'client count': 0,\n",
       "  'protocol version major': 3,\n",
       "  'protocol version minor': 1,\n",
       "  'server running': False,\n",
       "  'server runs': 0},\n",
       " 'registered channels': [-4, 1, 2, 3, 4],\n",
       " 'resolution': 'Standard',\n",
       " 'serial': '2143000XZI',\n",
       " 'software clock': None,\n",
       " 'software version': '2.16.2',\n",
       " 'stream block size events': 131072,\n",
       " 'stream block size latency': 20,\n",
       " 'test signal divider': 63}"
      ]
     },
     "execution_count": 15,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "fr.getConfiguration()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "9cc7edb9-7ab5-4859-b5a2-5cbe2debeba4",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "{'channel number scheme': 2,\n",
       " 'configure version': 1,\n",
       " 'current time': '2023-07-03 12:51:36 -0500',\n",
       " 'devices': [{'PCB version': '1.6b (1)',\n",
       "   'model': 'Time Tagger Ultra',\n",
       "   'serial': '2143000XZI'}],\n",
       " 'firmware version': 'TT-Ultra, FW 5, TS 2022-02-02 13:09:16, OK 1.31',\n",
       " 'fpga link': {'enabled': False},\n",
       " 'hardware buffer size': 67108864,\n",
       " 'inputs': [{'channel': [1, -1],\n",
       "   'conditional filter filtered': [True, False],\n",
       "   'conditional filter triggers': [False, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [552, 552],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': -0.05},\n",
       "  {'channel': [2, -2],\n",
       "   'conditional filter filtered': [False, False],\n",
       "   'conditional filter triggers': [False, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [1210, 1210],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': 2.0},\n",
       "  {'channel': [3, -3],\n",
       "   'conditional filter filtered': [False, False],\n",
       "   'conditional filter triggers': [False, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [1458, 1458],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': 2.0},\n",
       "  {'channel': [4, -4],\n",
       "   'conditional filter filtered': [False, False],\n",
       "   'conditional filter triggers': [True, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [324, 324],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': -0.02}],\n",
       " 'led bitmask': 0,\n",
       " 'led disable': False,\n",
       " 'measurements': [{'name': 'Histogram',\n",
       "   'params': {'binwidth': 100,\n",
       "    'click channel': 4,\n",
       "    'n bins': 125,\n",
       "    'start channel': 1},\n",
       "   'registered channels': [1, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'Counter',\n",
       "   'params': {'binwidth': 20000000000, 'channels': [1, 4], 'n values': 100},\n",
       "   'registered channels': [1, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'Countrate',\n",
       "   'params': {'channels': [1, 2, 3, 4]},\n",
       "   'registered channels': [1, 2, 3, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'Countrate',\n",
       "   'params': {'channels': [1, 2, 3, 4]},\n",
       "   'registered channels': [1, 2, 3, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'FileWriter',\n",
       "   'params': {'channels': [1, 2, 3, 4, -4],\n",
       "    'filename': 'C:\\\\Users\\\\lociuser\\\\Documents\\\\Time Tagger Lab\\\\Time Tag Files\\\\TimeTags_2023-07-03_125136.ttbin'},\n",
       "   'registered channels': [-4, 1, 2, 3, 4],\n",
       "   'virtual channels': []}],\n",
       " 'network': {'client count': 0,\n",
       "  'protocol version major': 3,\n",
       "  'protocol version minor': 1,\n",
       "  'server running': False,\n",
       "  'server runs': 0},\n",
       " 'registered channels': [-4, 1, 2, 3, 4],\n",
       " 'resolution': 'Standard',\n",
       " 'serial': '2143000XZI',\n",
       " 'software clock': None,\n",
       " 'software version': '2.16.2',\n",
       " 'stream block size events': 131072,\n",
       " 'stream block size latency': 20,\n",
       " 'test signal divider': 63}"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "fr.getConfiguration()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "ea1b7510-d58f-4311-b344-884b62d96577",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "{'channel number scheme': 2,\n",
       " 'configure version': 1,\n",
       " 'current time': '2023-07-03 12:51:36 -0500',\n",
       " 'devices': [{'PCB version': '1.6b (1)',\n",
       "   'model': 'Time Tagger Ultra',\n",
       "   'serial': '2143000XZI'}],\n",
       " 'firmware version': 'TT-Ultra, FW 5, TS 2022-02-02 13:09:16, OK 1.31',\n",
       " 'fpga link': {'enabled': False},\n",
       " 'hardware buffer size': 67108864,\n",
       " 'inputs': [{'channel': [1, -1],\n",
       "   'conditional filter filtered': [True, False],\n",
       "   'conditional filter triggers': [False, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [552, 552],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': -0.05},\n",
       "  {'channel': [2, -2],\n",
       "   'conditional filter filtered': [False, False],\n",
       "   'conditional filter triggers': [False, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [1210, 1210],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': 2.0},\n",
       "  {'channel': [3, -3],\n",
       "   'conditional filter filtered': [False, False],\n",
       "   'conditional filter triggers': [False, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [1458, 1458],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': 2.0},\n",
       "  {'channel': [4, -4],\n",
       "   'conditional filter filtered': [False, False],\n",
       "   'conditional filter triggers': [True, False],\n",
       "   'deadtime': [2000, 2000],\n",
       "   'delay hardware': [0, 0],\n",
       "   'delay software': [0, 0],\n",
       "   'event divider': [1, 1],\n",
       "   'hardware delay compensation': [324, 324],\n",
       "   'input hysteresis': 0,\n",
       "   'input impedance high': False,\n",
       "   'input mux': 0,\n",
       "   'normalization': [True, True],\n",
       "   'resolution': 'Standard',\n",
       "   'resolution rms': 8.0,\n",
       "   'trigger level': -0.02}],\n",
       " 'led bitmask': 0,\n",
       " 'led disable': False,\n",
       " 'measurements': [{'name': 'Histogram',\n",
       "   'params': {'binwidth': 100,\n",
       "    'click channel': 4,\n",
       "    'n bins': 125,\n",
       "    'start channel': 1},\n",
       "   'registered channels': [1, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'Counter',\n",
       "   'params': {'binwidth': 20000000000, 'channels': [1, 4], 'n values': 100},\n",
       "   'registered channels': [1, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'Countrate',\n",
       "   'params': {'channels': [1, 2, 3, 4]},\n",
       "   'registered channels': [1, 2, 3, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'Countrate',\n",
       "   'params': {'channels': [1, 2, 3, 4]},\n",
       "   'registered channels': [1, 2, 3, 4],\n",
       "   'virtual channels': []},\n",
       "  {'name': 'FileWriter',\n",
       "   'params': {'channels': [1, 2, 3, 4, -4],\n",
       "    'filename': 'C:\\\\Users\\\\lociuser\\\\Documents\\\\Time Tagger Lab\\\\Time Tag Files\\\\TimeTags_2023-07-03_125136.ttbin'},\n",
       "   'registered channels': [-4, 1, 2, 3, 4],\n",
       "   'virtual channels': []}],\n",
       " 'network': {'client count': 0,\n",
       "  'protocol version major': 3,\n",
       "  'protocol version minor': 1,\n",
       "  'server running': False,\n",
       "  'server runs': 0},\n",
       " 'registered channels': [-4, 1, 2, 3, 4],\n",
       " 'resolution': 'Standard',\n",
       " 'serial': '2143000XZI',\n",
       " 'software clock': None,\n",
       " 'software version': '2.16.2',\n",
       " 'stream block size events': 131072,\n",
       " 'stream block size latency': 20,\n",
       " 'test signal divider': 63}"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "fr.getConfiguration()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "e520bdb0-706f-481a-b7dc-6dcb52414093",
   "metadata": {},
   "outputs": [],
   "source": []
  }
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