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cassava_trait.obo
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cassava_trait.obo
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format-version: 1.2
date: 25:07:2017 17:10
saved-by: AAfolabi
auto-generated-by: OBO-Edit 2.3.1
default-namespace: CassavaTraitOntology
namespace-id-rule: * CO_334:$sequence(7,0100000,0999999)$
ontology: co_334
[Term]
id: CO_334:0000000
name: CGIAR cassava trait ontology
namespace: cassava_trait
def: "controlled vocabulary to describe each trait as a distinguishable, characteristic, quality or phenotypic feature of a developing or mature cassava plant." [CO:curators]
[Term]
id: CO_334:0000001
name: Agronomic trait
namespace: cassava_trait
def: "A characteristic in a cassava plant that will add economic value to agricultural production." [CO:curators]
is_a: CO_334:0000000 ! CGIAR cassava trait ontology
[Term]
id: CO_334:0000002
name: Morphological trait
namespace: cassava_trait
def: "Physical attributes that describe the shape or form of cassava plant." [CO:curators]
is_a: CO_334:0000000 ! CGIAR cassava trait ontology
[Term]
id: CO_334:0000003
name: Physiological trait
namespace: cassava_trait
def: "Characteristics related to the functioning of living cassava." [CO:curators]
is_a: CO_334:0000000 ! CGIAR cassava trait ontology
[Term]
id: CO_334:0000004
name: Quality trait
namespace: cassava_trait
def: "A characteristic or distinguishing feature of cassava related to its utilization after harvest." [CO:curators]
synonym: "post-harvest trait" EXACT []
is_a: CO_334:0000000 ! CGIAR cassava trait ontology
[Term]
id: CO_334:0000005
name: Stress trait
namespace: cassava_trait
def: "A characteristic related to plant functioning in the presence of a biotic or abiotic challenge to normal or optimal growing conditions." [CO:curators]
is_a: CO_334:0000000 ! CGIAR cassava trait ontology
[Term]
id: CO_334:0000006
name: Abiotic stress trait
namespace: cassava_trait
def: "Response in terms of resistance or sensitivity to abiotic stress." [CO:curators]
is_a: CO_334:0000005 ! Stress trait
[Term]
id: CO_334:0000007
name: Biotic stress trait
namespace: cassava_trait
def: "Response in terms of resistance, susceptibility or tolerance to biotic stress." [CO:curators]
is_a: CO_334:0000005 ! Stress trait
[Term]
id: CO_334:0000008
name: sprouting proportion
namespace: cassava_trait
def: "Proportion of stakes germinated scored three month after planting." [CO:curators]
synonym: "sprout" EXACT []
synonym: "sprout_comp_r" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000472 ! Sprouting
relationship: variable_of CO_334:0010220 ! Counting: Sprouting_method
relationship: variable_of CO_334:0100582 ! ratio
[Term]
id: CO_334:0000009
name: initial vigor assessment 1-7
namespace: cassava_trait
def: "Visual assessment of plant vigor during establishment scored one month after planting. 3 = Not vigorous, 5 = Medium vigor, 7 = highly vigorous." [CO:curators]
synonym: "Can't fall when there is strong wind" EXACT []
synonym: "IVig_IITAVisScg_1to7" EXACT []
synonym: "vigor" EXACT []
xref: TO:0000250
is_a: CO_334:0001000 ! Variables
is_a: CO_334:0002010 ! Farmer trait
relationship: variable_of CO_334:0000386 ! Initial vigor
relationship: variable_of CO_334:0010228 ! Visual Rating: Initial vigor_method
relationship: variable_of CO_334:0100434 ! 7pt scale
[Term]
id: CO_334:0000010
name: plant stands harvested counting
namespace: cassava_trait
def: "A count of the number of plant stands at harvest." [CO:curators]
synonym: "nohav" EXACT []
synonym: "NoHvstPlnt_Count_Plnt" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000434 ! Plant stands harvested
relationship: variable_of CO_334:0010284 ! Counting: Plant stands harvested_method
relationship: variable_of CO_334:0100490 ! plant
[Term]
id: CO_334:0000011
name: root number per plot counting
namespace: cassava_trait
def: "A count of the total number of storage roots (marketable and non-marketable) harvested per plot." [CO:curators]
synonym: "NoHvstRt_Count_Rt" EXACT []
synonym: "plotrtno" RELATED []
synonym: "rtno" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000452 ! Root number
relationship: variable_of CO_334:0010285 ! Counting: Root number_method
relationship: variable_of CO_334:0100491 ! root
[Term]
id: CO_334:0000012
name: fresh storage root weight per plot
namespace: cassava_trait
def: "Total fresh weight of storage roots harvested per plot measured in kilogram (kg)." [CO:curators]
synonym: "rtwt" EXACT []
synonym: "RtWt_Wgh_kg" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000302 ! Storage root weight by plot
relationship: variable_of CO_334:0010286 ! Measurement: Fresh weight of storage root_method
relationship: variable_of CO_334:0100493 ! kg
[Term]
id: CO_334:0000013
name: fresh root yield
namespace: cassava_trait
def: "Fresh weight of harvested roots expressed in tons per hectares (t/ha) per plant." [CO:curators]
synonym: "Can easily fill a sack or the truck" EXACT []
synonym: "Can provide at least ten cassava tubers per plant stand" EXACT []
synonym: "fyld" EXACT []
synonym: "RtYld_Fresh_tha" EXACT []
is_a: CO_334:0001000 ! Variables
is_a: CO_334:0001027 ! farmer preference trait at harvest
is_a: CO_334:0002010 ! Farmer trait
relationship: variable_of CO_334:0000456 ! Root yield
relationship: variable_of CO_334:0010329 ! Calculation: Fresh root yield_method
relationship: variable_of CO_334:0100535 ! t/ha
[Term]
id: CO_334:0000014
name: dry yield
namespace: cassava_trait
def: "Dry weight of harvested roots derived by multiplying fresh storage root yield by dry matter content expressed in tons per hectares (t/ha)." [CO:curators]
synonym: "dyld" EXACT []
synonym: "RtYld_Dry_tha" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000456 ! Root yield
relationship: variable_of CO_334:0010330 ! Calculation: Dry yield_method
relationship: variable_of CO_334:0100535 ! t/ha
[Term]
id: CO_334:0000015
name: harvest index variable
namespace: cassava_trait
def: "Proportion of fresh root weight in total biomass." [CO:curators]
synonym: "HI" EXACT []
xref: TO:0000128
is_a: CO_334:0001000 ! Variables
relationship: derives_from CO_334:0000013 ! fresh root yield
relationship: derives_from CO_334:0000017 ! top yield
relationship: variable_of CO_334:0000267 ! Harvest index
relationship: variable_of CO_334:0010512 ! Calculation: Harvest index_method
relationship: variable_of CO_334:0100582 ! ratio
[Term]
id: CO_334:0000016
name: fresh shoot weight measurement in kg per plot
namespace: cassava_trait
def: "Total fresh weight of harvested foliage and stems in kilograms per plot." [CO:curators]
synonym: "shtwt" EXACT []
synonym: "ShWt_Meas_kg" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000305 ! Fresh shoot weight by plot
relationship: variable_of CO_334:0010287 ! Measurement: Fresh shoot weight_method
relationship: variable_of CO_334:0100493 ! kg
[Term]
id: CO_334:0000017
name: top yield
namespace: cassava_trait
def: "Total fresh weight of harvested foliage and stems expressed in tons per hectare (t/ha)." [CO:curators]
synonym: "RtYld_FreshAerial_tha" EXACT []
synonym: "tyld" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000456 ! Root yield
relationship: variable_of CO_334:0010332 ! Calculation: Top yield_method
relationship: variable_of CO_334:0100535 ! t/ha
[Term]
id: CO_334:0000018
name: plant height measurement in cm
namespace: cassava_trait
def: "Vertical height of plants from the ground to top of the canopy measured in centimeter (cm)." [CO:curators]
synonym: "PlntH_Meas_cm" EXACT []
synonym: "pltht" EXACT []
xref: TO:0000207
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000432 ! Plant height
relationship: variable_of CO_334:0010303 ! Measurement: Plant height_method
relationship: variable_of CO_334:0100558 ! cm
[Term]
id: CO_334:0000019
name: storage root size visual rating 1-7
namespace: cassava_trait
def: "Visual rating of storage root size with 3 = short, 5 = medium, and 7 = long." [CO:curators]
synonym: "Ease of digging out root form the soil" EXACT []
synonym: "RtLng_VisScg_1to7" EXACT []
synonym: "rtsz" EXACT []
is_a: CO_334:0001000 ! Variables
is_a: CO_334:0002010 ! Farmer trait
relationship: variable_of CO_334:0000492 ! Storage Root Size
relationship: variable_of CO_334:0010288 ! Visual Rating: Storage root size_method
relationship: variable_of CO_334:0100494 ! 7pt scale
[Term]
id: CO_334:0000020
name: storage root shape visual rating 1-6
namespace: cassava_trait
def: "Visual rating of storage root shape with 1 = conical, 2 = conical-cylindrical, 3 = cylindrical, 4 = fusiform, 5 = Irrregular, and 6 = Combination of shapes." [CO:curators]
synonym: "rtshp" EXACT []
synonym: "RtShp_VisClsn_1to6" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000491 ! Storage Root Shape
relationship: variable_of CO_334:0010289 ! Visual Rating: Storage root shape_method
relationship: variable_of CO_334:0100495 ! 6pt scale
[Term]
id: CO_334:0000021
name: storage root pulp color visual rating 1-3
namespace: cassava_trait
def: "Visual rating of most frequent pulp color with 1 = white or cream, 2 = yellow, and 3 = pink." [CO:curators]
synonym: "plpcol" EXACT []
synonym: "PlpCol_VisClsn_1to3" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000490 ! Storage Root Pulp Color
relationship: variable_of CO_334:0010292 ! Visual Rating: Storage root pulp color _method
relationship: variable_of CO_334:0100498 ! 3pt scale
[Term]
id: CO_334:0000022
name: root neck length visual rating 0-7
namespace: cassava_trait
def: "Visual rating of root neck length with 0 = absent or sessile, 3 = short, 5 = intermediate, and 7 = long." [CO:curators]
synonym: "nklgt" EXACT []
synonym: "NkLng_VisClsn_0to7" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000451 ! Storage root neck length
relationship: variable_of CO_334:0010293 ! Visual Rating: Root neck length_method
relationship: variable_of CO_334:0100499 ! 8pt scale
[Term]
id: CO_334:0000023
name: petiole color visual rating 1-9
namespace: cassava_trait
def: "Visual rating of the petiole color with 3 = light green, 5 = dark green, 7 = green-purple, 8 = red, and 9 = purple." [CO:curators]
synonym: "petcol" EXACT []
synonym: "PtlCol_VisClsn_1to9" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000427 ! Petiole Color
relationship: variable_of CO_334:0010345 ! Visual Rating: Petiole color_method
relationship: variable_of CO_334:0100551 ! 7pt scale
[Term]
id: CO_334:0000024
name: petiole length visual rating 0-7
namespace: cassava_trait
def: "Visual rating of petiole length with 0 = petiole absent, 3 = short (5-10cm), 5 = medium (15-20cm), and 7 = long (25-30cm)." [CO:curators]
synonym: "petlgt" EXACT []
synonym: "PtlLng_VisScg_0to7" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000429 ! Petiole length
relationship: variable_of CO_334:0010344 ! Visual Rating: Petiole Length_method
relationship: variable_of CO_334:0100550 ! 4pt scale
[Term]
id: CO_334:0000025
name: young stem pubescence visual rating 0-7
namespace: cassava_trait
def: "Visual rating of young stem pubescence with 0 = absent or glabrous, 3 = little pubescence, 5 = moderate pubescence, and 7 = high pubescence." [CO:curators]
synonym: "stmpub" EXACT []
synonym: "StPub_VisScg_1to7" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000506 ! Young Stem Pubescence
relationship: variable_of CO_334:0010348 ! Visual Rating: Young stem pubescence_method
relationship: variable_of CO_334:0100554 ! 8pt scale
[Term]
id: CO_334:0000026
name: apical pubescence visual rating 0-7
namespace: cassava_trait
def: "Visual rating of young leaf pubescence with 0 = absent or glabrous, 3 = little pubescence, 5 = moderate pubescence, and 7 = high pubescence." [CO:curators]
synonym: "apubes" EXACT []
synonym: "LfPub_VisClsn_0to7" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000283 ! Apical pubescence
relationship: variable_of CO_334:0010338 ! Visual Rating: Apical pubescence_method
relationship: variable_of CO_334:0100544 ! 8pt scale
[Term]
id: CO_334:0000027
name: bacterial disease
namespace: cassava_trait
def: "Traits related to incidence and severity of cassava response to bacterial pathogens." [CO:curators]
is_a: CO_334:0000007 ! Biotic stress trait
created_by: BAKARE
creation_date: 2010-11-08T06:42:36Z
[Term]
id: CO_334:0000028
name: viral disease
namespace: cassava_trait
def: "Traits related to incidence and severity of cassava response to viral pathogens." [CO:curators]
is_a: CO_334:0000007 ! Biotic stress trait
created_by: BAKARE
creation_date: 2010-11-08T06:43:31Z
[Term]
id: CO_334:0000029
name: fungal disease
namespace: cassava_trait
def: "Traits related to incidence and severity of cassava response to fungal pathogens." [CO:curators]
is_a: CO_334:0000007 ! Biotic stress trait
created_by: BAKARE
creation_date: 2010-11-08T06:44:26Z
[Term]
id: CO_334:0000030
name: insect damage
namespace: cassava_trait
def: "Traits related to damage caused by insects." [CO:curators]
is_a: CO_334:0000007 ! Biotic stress trait
created_by: BAKARE
creation_date: 2010-11-08T06:45:42Z
[Term]
id: CO_334:0000031
name: Cassava bacterial blight severity
namespace: cassava_trait
def: "Severity of bacterial blight disease caused by Xanthomonas axonopodis pv. Manihotis" [CO:curators]
synonym: "Cassava bacterial blight severity - Cassavabase" EXACT []
synonym: "CBBSev" EXACT []
xref: TO:0000770
is_a: CO_334:0000027 ! bacterial disease
[Term]
id: CO_334:0000032
name: Cassava anthracnose disease severity
namespace: cassava_trait
def: "Severity of the Cassava anthracnose disease caused by Colletotrichum gloeosporioides f. sp." [CO:curators]
synonym: "CADSev" EXACT []
synonym: "Cassava anthracnose disease severity - Cassavabase" EXACT []
xref: TO:0000439
is_a: CO_334:0000029 ! fungal disease
[Term]
id: CO_334:0000033
name: Cassava green mite severity
namespace: cassava_trait
def: "Severity of the damage caused by cassava green mite" [CO:curators]
synonym: "Cassava green mite severity - Cassavabase" EXACT []
synonym: "CGMSev" EXACT []
xref: TO:0000261
is_a: CO_334:0000030 ! insect damage
[Term]
id: CO_334:0000034
name: cassava mealy bug severity by visual rating 1-5
namespace: cassava_trait
def: "Visual rating of damage caused by cassava mealy-bug, Phenacoccus Manihoti. Symptoms rated from 1 = (clean, no infection) to 5 = (extremely severe, severely diseased)." [CO:curators]
synonym: "cmbs" EXACT []
synonym: "CMBSev_Est_1to5" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000340 ! Cassava mealy bug severity
relationship: variable_of CO_334:0010267 ! Visual Observation: Cassava mealy bug severity_method
relationship: variable_of CO_334:0100473 ! 5 pt scale
[Term]
id: CO_334:0000035
name: Cassava mosaic disease severity
namespace: cassava_trait
def: "Severity of the symptoms caused by the cassava mosaic virus, in the family Geminiviridae and genus Begomovirus" [CO:curators]
synonym: "Cassava mosaic disease severity - Cassavabase" EXACT []
synonym: "CMDSev" EXACT []
xref: TO:0000148
is_a: CO_334:0000028 ! viral disease
[Term]
id: CO_334:0000036
name: Cassava brown streak disease leaf severity
namespace: cassava_trait
def: "Severity of the symptoms on leaf caused by cassava brown streak virus in the family of Potyviridae and genus Ipomovirus" [CO:curators]
synonym: "Cassava brown streak disease leaf severity - Cassavabase" EXACT []
synonym: "CBSDRtSev" EXACT []
xref: TO:0000148
is_a: CO_334:0000028 ! viral disease
[Term]
id: CO_334:0000037
name: Cassava bacterial blight incidence
namespace: cassava_trait
def: "Incidence of the cassava bacterial blight" [CO:curators]
synonym: "CBBInc" EXACT []
xref: TO:0000770
is_a: CO_334:0000027 ! bacterial disease
[Term]
id: CO_334:0000038
name: Cassava anthracnose disease incidence
namespace: cassava_trait
def: "Proportion of plants within a plot showing symptoms of cassava anthracnose disease" [CO:curators]
synonym: "cadi" EXACT []
xref: TO:0000439
is_a: CO_334:0000029 ! fungal disease
[Term]
id: CO_334:0000039
name: Cassava mosaic disease incidence
namespace: cassava_trait
def: "Proportion of plants within a plot showing symptoms of cassava mosaic disease" [CO:curators]
synonym: "cmdi" EXACT []
xref: TO:0000148
is_a: CO_334:0000028 ! viral disease
[Term]
id: CO_334:0000040
name: Cassava brown streak disease leaf incidence
namespace: cassava_trait
def: "Proportion of plants within a plot showing symptoms of cassava brown streak disease" [CO:curators]
synonym: "cbsdli" EXACT []
xref: TO:0000148
is_a: CO_334:0000028 ! viral disease
[Term]
id: CO_334:0000041
name: cassava mealy bug incidence by ratio
namespace: cassava_trait
def: "Proportion of plants within a plot showing symptoms of cassava mealy-bug damage." [CO:curators]
synonym: "cmbi" EXACT []
synonym: "CMBInc_Est_1to5" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000339 ! Cassava mealy bug incidence
relationship: variable_of CO_334:0010268 ! Counting: Cassava mealy bug incidence_method
relationship: variable_of CO_334:0100582 ! ratio
[Term]
id: CO_334:0000042
name: spiraling whitefly severity : visual 1-5
namespace: cassava_trait
def: "Visual rating of damage caused by spiraling white fly, Aleurodicus dispersus. Symptoms rated from 1 = (clean, no damage) to 5 = (extremely severe, severely damaged)." [CO:curators]
synonym: "Swfs" EXACT []
synonym: "SWfSev_VisScg_1to5" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000465 ! Spiraling whitefly severity
relationship: variable_of CO_334:0010325 ! Visual Observation: Spiraling whitefly severity_method
relationship: variable_of CO_334:0100531 ! 5 pt scale
[Term]
id: CO_334:0000043
name: spiraling whitefly incidence by proportion
namespace: cassava_trait
def: "Proportion of plants within a plot showing evidence of colonization by spiraling whitefly." [CO:curators]
synonym: "Swfi" EXACT []
synonym: "SWfInc_Comp_r" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000464 ! Spiraling whitefly incidence
relationship: variable_of CO_334:0010326 ! Counting: Spiraling whitefly incidence_method
relationship: variable_of CO_334:0100582 ! ratio
[Term]
id: CO_334:0000044
name: red spider mite severity : visual 1-5
namespace: cassava_trait
def: "Visual rating of damage caused by red spider mite, Oligonychus gossypii and Tetranychus spp. Symptoms rated from 1 = (clean, no infection) to 5 = (extremely severe, severely damaged)." [CO:curators]
synonym: "rsms" EXACT []
synonym: "RSMSev_VisScg_1to5" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000444 ! Red spider mite severity
relationship: variable_of CO_334:0010323 ! Visual Observation: Red spider mite severity_method
relationship: variable_of CO_334:0100529 ! 5 pt scale
[Term]
id: CO_334:0000045
name: red spider mite incidence by proportion
namespace: cassava_trait
def: "Proportion of plants within a plot showing evidence of colonization by red spider mite." [CO:curators]
synonym: "rsmi" EXACT []
synonym: "RSMInc_Comp_r" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000443 ! Red spider mite incidence
relationship: variable_of CO_334:0010324 ! Counting: Red spider mite incidence_method
relationship: variable_of CO_334:0100582 ! ratio
[Term]
id: CO_334:0000046
name: petiole insertion angle visual rating 0-7
namespace: cassava_trait
def: "Visual rating of orientation or angle between the branch and petiole with 0 = no petiole, 3 = 15-30 degrees, 5 = 45-70 degrees, and 7 = 75-90 degrees." [CO:curators]
synonym: "petang" EXACT []
synonym: "PtlAng_VisScg_0to7" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000428 ! Petiole Insertion Angle
relationship: variable_of CO_334:0010343 ! Visual Rating: Petiole Insertion Angle_method
relationship: variable_of CO_334:0100549 ! 7pt scale
[Term]
id: CO_334:0000047
name: abscisic acid content of leaf ug/g
namespace: cassava_trait
def: "Abscisic acid content of leaf sample." [CO:curators]
synonym: "abscon" EXACT []
synonym: "AbsCt_Meas_ugg" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000276 ! Abscisic acid content
relationship: variable_of CO_334:0010366 ! Estimation: Abscisic acid content_method
relationship: variable_of CO_334:0100572 ! ug/g
[Term]
id: CO_334:0000048
name: leaf retention visual rating 1-5
namespace: cassava_trait
def: "Visual rating of leaf longevity using a scale of 1 =(very poor retention) to 5 = (outstanding leaf retention)." [CO:curators]
synonym: "lfret" EXACT []
synonym: "LfRet_VisSc_1to5" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000396 ! Leaf retention
relationship: variable_of CO_334:0010305 ! Visual Rating: Leaf retention_method
relationship: variable_of CO_334:0100511 ! 5pt scale
[Term]
id: CO_334:0000049
name: leaf life span in days
namespace: cassava_trait
def: "Measures leaf life span estimated as number of days." [CO:curators]
synonym: "lflife" EXACT []
synonym: "LfLife_Count_days" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000390 ! Leaf life span
relationship: variable_of CO_334:0010367 ! Calculation: Leaf life _method
relationship: variable_of CO_334:0100611 ! days
[Term]
id: CO_334:0000050
name: storage root peduncle visual rating 0-5
namespace: cassava_trait
def: "Visual rating of root peduncle length using a scale of 0 = sessile, 3 = pedunculate, and 5 = mixed." [CO:curators]
synonym: "RtPed_VisClsn_0to7" EXACT []
synonym: "rtpedu" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000488 ! Storage Root Peduncle
relationship: variable_of CO_334:0010309 ! Visual Rating: Storage root peduncle_method
relationship: variable_of CO_334:0100515 ! 8pt scale
[Term]
id: CO_334:0000051
name: storage root constriction visual scoring 0&1
namespace: cassava_trait
def: "Visual scoring of mature root constrictions recorded as 0= absent and 1=present." [CO:curators]
synonym: "rtcons" EXACT []
synonym: "RtConsPrsnc_VisClsn_0or1" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000485 ! Storage Root Constrictions
relationship: variable_of CO_334:0010310 ! Visual Rating: Storage root constrictions_method
relationship: variable_of CO_334:0100516 ! 2pt scale
[Term]
id: CO_334:0000052
name: root position visual rating 1-3
namespace: cassava_trait
def: "Visual rating root position in the soil with 1 = tending toward vertical, 2 = tending toward horizontal, and 3 = irregular." [CO:curators]
synonym: "RtPos_VisClsn_1to3" EXACT []
synonym: "rtpost" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000453 ! Root Position
relationship: variable_of CO_334:0010364 ! Visual Rating: Root position_method
relationship: variable_of CO_334:0100570 ! 3pt scale
[Term]
id: CO_334:0000053
name: root surface color visual rating 1-3
namespace: cassava_trait
def: "Visual rating of storage root surface color with 1 = white or cream, 2 =light brown, and 3 = dark brown." [CO:curators]
synonym: "rtscol" EXACT []
synonym: "RtSurfCol_VisClsn_1to3" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000454 ! Storage root surface color
relationship: variable_of CO_334:0010311 ! Visual Rating: Root surface color_method
relationship: variable_of CO_334:0100517 ! 3pt scale
[Term]
id: CO_334:0000054
name: root surface texture visual rating 1-7
namespace: cassava_trait
def: "Visual rating of storage root texture with 3 = smooth, 5 = intermediate, and 7 = rough." [CO:curators]
synonym: "RtSurfTex_VisClsn_1to7" EXACT []
synonym: "rttext" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000455 ! Storage root surface texture
relationship: variable_of CO_334:0010312 ! Visual Rating: Root surface texture_method
relationship: variable_of CO_334:0100518 ! 3pt scale
[Term]
id: CO_334:0000055
name: storage root diameter visual rating 1-7
namespace: cassava_trait
def: "Visual rating of storage root diameter with 3 = short, 5 = medium and 7 = long." [CO:curators]
synonym: "RtDia_VisScg_1to7" EXACT []
synonym: "rtdiam" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000487 ! Storage Root Diameter
relationship: variable_of CO_334:0010365 ! Visual Rating: Storage root diameter_method
relationship: variable_of CO_334:0100571 ! 7pt scale
[Term]
id: CO_334:0000056
name: caruncle color visual scoring 1-3
namespace: cassava_trait
def: "Visual scoring of caruncle color with 1 = white or cream, 2 = pink or red, and 3 = purple." [CO:curators]
synonym: "carcol" EXACT []
synonym: "CarunCol_VisClsn_1to3" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000298 ! Caruncle Color
relationship: variable_of CO_334:0010363 ! Visual Rating: Caruncle color_method
relationship: variable_of CO_334:0100569 ! 4pt scale
[Term]
id: CO_334:0000057
name: stigma color visual scoring 1-5
namespace: cassava_trait
def: "Visual scoring of stigma color with 1 = white, 2 = orange, 3 = green, 4 = red, and 5 = purple." [CO:curators]
synonym: "stgmco" EXACT []
synonym: "StgmCol_VisClsn_1to5" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000481 ! Stigma Color
relationship: variable_of CO_334:0010355 ! Visual Rating: Stigma color_method
relationship: variable_of CO_334:0100561 ! 5pt scale
[Term]
id: CO_334:0000058
name: ovary color visual rating 1-5
namespace: cassava_trait
def: "Visual scoring of ovary color with 1 = white, 2 = orange, 3 = green, 4 = red, and 5 = purple." [CO:curators]
synonym: "OvrCol_VisClsn_1to5" EXACT []
synonym: "ovryco" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000421 ! Ovary Color
relationship: variable_of CO_334:0010356 ! Visual Rating: Ovary color_method
relationship: variable_of CO_334:0100562 ! 5pt scale
[Term]
id: CO_334:0000059
name: disc color visual scoring 1-5
namespace: cassava_trait
def: "Visual scoring of floral disc color with 1 = white, 2 = orange, 3 = green, 4 = red, and 5 = purple." [CO:curators]
synonym: "DiscCol_VisClsn_1to5" EXACT []
synonym: "discol" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000360 ! Disc color
relationship: variable_of CO_334:0010354 ! Visual Rating: Disc color_method
relationship: variable_of CO_334:0100560 ! 5pt scale
[Term]
id: CO_334:0000060
name: sepal color visual rating 1-5
namespace: cassava_trait
def: "Visual scoring of sepal color with 1 = white, 2 = orange, 3 = green, 4 = red, and 5 = purple." [CO:curators]
synonym: "SepCol_VisClsn_1to5" EXACT []
synonym: "splcol" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000462 ! Sepal Color
relationship: variable_of CO_334:0010353 ! Visual Rating: Sepal color_method
relationship: variable_of CO_334:0100559 ! 5pt scale
[Term]
id: CO_334:0000061
name: anther color visual rating 1-3
namespace: cassava_trait
def: "Visual scoring of anther color with 1 = cream, 2 = yellow, and 3 = other." [CO:curators]
synonym: "AnthCol_VisClsn_1to5" EXACT []
synonym: "anther" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000280 ! Anther Color
relationship: variable_of CO_334:0010357 ! Visual Rating: Anther color_method
relationship: variable_of CO_334:0100563 ! 3pt scale
[Term]
id: CO_334:0000062
name: stem color visual scoring 1-4
namespace: cassava_trait
def: "Visual scoring of stem color with 1 = silver green, 2 = light brown or orange, 3 = dark brown, 4 = dark green, and 5 = golden." [CO:curators]
synonym: "stmcol" EXACT []
synonym: "StmCol_VisClsn_1to4" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000475 ! Stem Color
relationship: variable_of CO_334:0010301 ! Visual Scoring: Stem color_method
relationship: variable_of CO_334:0100507 ! 4pt scale
[Term]
id: CO_334:0000063
name: seed color visual rating 1-5
namespace: cassava_trait
def: "Visual scoring of seed color with 1 = brown, 2 = grey, 3 = mottled, 4 = black, and 5 = dark brown." [CO:curators]
synonym: "SdCol_VisClsn_1to5" EXACT []
synonym: "seedco" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000459 ! Seed color
relationship: variable_of CO_334:0010362 ! Visual Rating: Seed color_method
relationship: variable_of CO_334:0100568 ! 5pt scale
[Term]
id: CO_334:0000064
name: storage root periderm color visual rating 1-4
namespace: cassava_trait
def: "Visual rating of the color of outer surface of storage root periderm (outer skin color) with 1 = white or cream, 2 = yellow, 3 = light brown, 4 = dark brown." [CO:curators]
synonym: "outcol" EXACT []
synonym: "RtPeridCol_VisClsn_1to4" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000489 ! Storage Root Periderm Color
relationship: variable_of CO_334:0010291 ! Visual Rating: Storage root periderm color_method
relationship: variable_of CO_334:0100497 ! 4pt scale
[Term]
id: CO_334:0000065
name: ascorbic acid in root percentage
namespace: cassava_trait
def: "Antioxidant and water soluble vitamin of cassava storage root." [CO:curators]
synonym: "AscACt_Meas_pct" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000284 ! Ascorbic acid
relationship: variable_of CO_334:0010377 ! Estimation: Ascorbic acid_method
relationship: variable_of CO_334:0100583 ! pct (%)
[Term]
id: CO_334:0000066
name: ash content in percentage
namespace: cassava_trait
def: "Residue left behind after all organic matter has been burnt off, a measure of total mineral salts in a food estimated in percentage (%)." [CO:curators]
synonym: "ash" EXACT []
synonym: "MinCt_Burng_pct" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000285 ! Ash content
relationship: variable_of CO_334:0010378 ! Estimation: Ash content_method
relationship: variable_of CO_334:0100583 ! pct (%)
[Term]
id: CO_334:0000067
name: fibre content estimation in percentage
namespace: cassava_trait
def: "Part of tuber root that cannot be digested by humans estimated in percentage (%)." [CO:curators]
synonym: "FibCt_Meas_pct" EXACT []
synonym: "fibre" EXACT []
synonym: "Longer varieties has less fibre in them" EXACT []
is_a: CO_334:0001000 ! Variables
is_a: CO_334:0002010 ! Farmer trait
relationship: variable_of CO_334:0000366 ! Fibre content
relationship: variable_of CO_334:0010373 ! Estimation: Fibre content_method
relationship: variable_of CO_334:0100583 ! pct (%)
[Term]
id: CO_334:0000068
name: iron content in roots by ppm (mg/kg)
namespace: cassava_trait
def: "Estimation of total iron content in cassava storage roots expressed in part per million or milligram per kilogram." [CO:curators]
synonym: "fe" EXACT []
synonym: "FeCt_Meas_ugg" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000387 ! Iron content
relationship: variable_of CO_334:0010370 ! Estimation: Iron content_method
relationship: variable_of CO_334:0100572 ! ug/g
[Term]
id: CO_334:0000069
name: moisture content in percentage
namespace: cassava_trait
def: "Percentage (%) of water contained in cassava storage root." [CO:curators]
synonym: "mc" EXACT []
synonym: "RtMoistCt_Comp_pct" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000407 ! Moisture content of fresh root
relationship: variable_of CO_334:0010314 ! Estimation: Moisture content_method
relationship: variable_of CO_334:0100583 ! pct (%)
[Term]
id: CO_334:0000070
name: protein content in percentage
namespace: cassava_trait
def: "Percentage (%) of protein content in cassava storage root." [CO:curators]
synonym: "ProtCt_Meas_pct" EXACT []
synonym: "protei" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000442 ! Protein content
relationship: variable_of CO_334:0010372 ! Estimation: Protein content_method
relationship: variable_of CO_334:0100583 ! pct (%)
[Term]
id: CO_334:0000071
name: starch content percentage
namespace: cassava_trait
def: "Percentage (%) of complex carbohydrate found in cassava storage root." [CO:curators]
synonym: "starch" EXACT []
synonym: "StrchCt_Est_pct" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000474 ! Starch Content
relationship: variable_of CO_334:0010313 ! Estimation: Starch content _method
relationship: variable_of CO_334:0100583 ! pct (%)
[Term]
id: CO_334:0000072
name: sugar content in percentage
namespace: cassava_trait
def: "Estimation of sugar content in cassava storage root expressed in percentage (%)." [CO:curators]
synonym: "sugar" EXACT []
synonym: "SugPCt_Meas_pct" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000495 ! Sugar content
relationship: variable_of CO_334:0010379 ! Estimation: Sugar content_method
relationship: variable_of CO_334:0100583 ! pct (%)
[Term]
id: CO_334:0000073
name: total carotenoid content in ug/g
namespace: cassava_trait
def: "Total extracted carotenoids in cassava storage root as estimated by spectrophotometer and expressed in ug per gram fresh weight." [CO:curators]
synonym: "CarotCt_spectro_ugg" EXACT []
synonym: "tc" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000297 ! Carotenoid content
relationship: variable_of CO_334:0010368 ! Estimation: Total carotenoid content_method
relationship: variable_of CO_334:0100574 ! ug beta caroten / g fresh weight
[Term]
id: CO_334:0000074
name: poundability assessment 0-4
namespace: cassava_trait
def: "Mealiness of boiled cassava storage root rating as 0 = Non poundable, 1 = slightly poundable, 2 = poundable, 3 = very poundable." [CO:curators]
synonym: "pd" EXACT []
synonym: "Pd_SensScg_1to4" EXACT []
synonym: "Soft and easy to eat for a toothless or weak tooth person" EXACT []
is_a: CO_334:0001000 ! Variables
is_a: CO_334:0001025 ! farmer preference trait post-harvest
is_a: CO_334:0002010 ! Farmer trait
relationship: variable_of CO_334:0000437 ! Poundability
relationship: variable_of CO_334:0010296 ! Sensory Assesment: Poundability_method
relationship: variable_of CO_334:0100502 ! 4pt scale
[Term]
id: CO_334:0000075
name: amylose content in ug/g percentage
namespace: cassava_trait
def: "Estimation of amylose content of cassava roots in percentage (%)." [CO:curators]
synonym: "amyl" EXACT []
synonym: "AmylCt_Meas_pct" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000279 ! Amylose content
relationship: variable_of CO_334:0010374 ! Estimation: Amylose content_method
relationship: variable_of CO_334:0100572 ! ug/g
[Term]
id: CO_334:0000076
name: hydrogen cyanide potential enzymatic method
namespace: cassava_trait
def: "Cyanogenic potential is an indicator of the potential production of hydrogen cyanide in cassava storage roots with less than 5mg/100g fresh weight of root = low, 5-10mg/100g fresh weight of root = medium, and 10mg/100g fresh weight of root = high." [CO:curators]
synonym: "hcn_enz" EXACT []
synonym: "RtCyanCt_Enz_1to3" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000502 ! Storage root cyanide content
relationship: variable_of CO_334:0010334 ! Estimation: Hydrogen cyanide potential enzymatic method
relationship: variable_of CO_334:0100540 ! 3pt scale
[Term]
id: CO_334:0000077
name: post-harvest physiological deterioration variable 0-10 scale measured 12 months after planting.
namespace: cassava_trait
def: "Internal root discoloration or vascular streaking that renders cassava roots unfit for human or animal consumption.\nA number of root samples are cut into 7 slices and each slice is scored on a 0-10 scale. 0 = No symptom of root discoloration, 1 = 10% of the root surface has root discoloration, 2 = 30% of the root surface has root discoloration, 3 = 30% of the root surface has root discoloration, 4 = 40% of the root surface has root discoloration, 5 = 50% of the root surface has root discoloration, 6 = 60% of the root surface has root discoloration, 7 = 70% of the root surface has root discoloration, 8 = 80% of the root surface has root discoloration, 9 = 90% of the root surface has root discoloration, 100 = 100% of the root surface has root discoloration" [CO:curators]
is_a: CO_334:0001000 ! Variables
is_a: CO_334:0001025 ! farmer preference trait post-harvest
relationship: variable_of CO_334:0000266 ! Post-harvest physiological deterioration
relationship: variable_of CO_334:0010001 ! Estimation: Post-harvest physiological deterioration method
relationship: variable_of CO_334:0100680 ! 11pt scale
[Term]
id: CO_334:0000078
name: zinc content in storage root ug/g
namespace: cassava_trait
def: "Total zinc content in cassava storage root." [CO:curators]
synonym: "zn" EXACT []
synonym: "ZnCt_Meas_ugg" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000507 ! Zinc content
relationship: variable_of CO_334:0010371 ! Estimation: Zinc content_method
relationship: variable_of CO_334:0100572 ! ug/g
[Term]
id: CO_334:0000079
name: branching level counting
namespace: cassava_trait
def: "Count of the actual number of levels of branching at or before harvest." [CO:curators]
synonym: "BrnchLvl_Count_Lvl" EXACT []
synonym: "brnlev" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000296 ! Branching Levels
relationship: variable_of CO_334:0010351 ! Counting: Branching levels_method
relationship: variable_of CO_334:0100557 ! number of levels
[Term]
id: CO_334:0000080
name: branching angle visual rating 0-7
namespace: cassava_trait
def: "Visual rating of a measured angle between vertical plane and first primary branching with 0 = non branching, 3 = 15-30 degrees, 5 = 45-60 degrees, and 7 = 75-90 degrees." [CO:curators]
synonym: "brnang" EXACT []
synonym: "BrnchAng_VisScg_0to7" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000294 ! Branching Angle
relationship: variable_of CO_334:0010302 ! Visual Scoring: Branching angle_method
relationship: variable_of CO_334:0100508 ! 8pt scale
[Term]
id: CO_334:0000081
name: leaf vein color visual rating 1-9
namespace: cassava_trait
def: "Visual scoring of leaf vein color with 3 = light green, 5 = dark green, 7 = green-purple, and 9 = purple." [CO:curators]
synonym: "LfVeinCol_VisClsn_1to9" EXACT []
synonym: "lfvnco" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000401 ! Leaf Vein Color
relationship: variable_of CO_334:0010337 ! Visual Rating: Leaf vein color_method
relationship: variable_of CO_334:0100543 ! 9pt scale
[Term]
id: CO_334:0000082
name: leaf lobe number counting
namespace: cassava_trait
def: "Most common number of leaf lobes assessed on five leaves from the middle of the plant at six months after planting." [CO:curators]
synonym: "lflbno" EXACT []
synonym: "LfLbNo_Count_Lb" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000395 ! Leaf Lobes Number
relationship: variable_of CO_334:0010340 ! Visual Rating: Leaf lobes number_method
relationship: variable_of CO_334:0100546 ! number
[Term]
id: CO_334:0000083
name: leaf lobe position visual rating 1-4
namespace: cassava_trait
def: "Visual rating of the position leaf lobes are held with 1 = erect, 2 = horizontal, 3 = deflexed, and 4 = retorse." [CO:curators]
synonym: "LfLbPo_VisClsn_1to4" EXACT []
synonym: "lflobp" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000393 ! Leaf Lobe Position
relationship: variable_of CO_334:0010341 ! Visual Rating: Leaf lobe position_method
relationship: variable_of CO_334:0100547 ! 4pt scale
[Term]
id: CO_334:0000084
name: rotted storage root counting
namespace: cassava_trait
def: "A count of the number of rotted storage roots per plot at the time of harvest." [CO:curators]
synonym: "NoRotRt_Count_Rt" EXACT []
synonym: "rtrot" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000457 ! Rotted storage roots
relationship: variable_of CO_334:0010295 ! Counting: Rotted storage roots _method
relationship: variable_of CO_334:0100491 ! root
[Term]
id: CO_334:0000085
name: taste of boiled root rating 1-3
namespace: cassava_trait
def: "Taste of boiled root rating as 1 = sweet, 2 = bland, and 3 = bitter." [CO:curators]
synonym: "Has a taste that cannot even be refused by the pigs. When it is bitter, the pigs rejects it." EXACT []
synonym: "pdtas" EXACT []
synonym: "RtTast_SensClsn_1to3" EXACT []
is_a: CO_334:0001000 ! Variables
is_a: CO_334:0001025 ! farmer preference trait post-harvest
is_a: CO_334:0002010 ! Farmer trait
relationship: variable_of CO_334:0000498 ! Taste of boiled roots
relationship: variable_of CO_334:0010297 ! Gustation: Taste of boiled roots_method
relationship: variable_of CO_334:0100503 ! 3pt scale
[Term]
id: CO_334:0000086
name: apical branching counting of number of weeks
namespace: cassava_trait
def: "Number of weeks from planting to first apical branching associated with the formation of inflorescence." [CO:curators]
synonym: "brntim" EXACT []
synonym: "FstBrnchTim_Count_wk" EXACT []
is_a: CO_334:0001000 ! Variables
relationship: variable_of CO_334:0000282 ! Apical branching
relationship: variable_of CO_334:0010350 ! Visual Rating: Apical branching_method
relationship: variable_of CO_334:0100556 ! weeks
[Term]
id: CO_334:0000087
name: bemisia tabaci adult by counting