diff --git a/Dockerfile b/Dockerfile index 00f76d2..1d15646 100644 --- a/Dockerfile +++ b/Dockerfile @@ -94,6 +94,10 @@ ENV PERL5LIB="$MINC_LIB_DIR/perl5/5.8.5" \ FREESURFER_DEPS="bc ca-certificates curl libgomp1 libxmu6 libxt6 tcsh perl" RUN chmod a+rx /opt/freesurfer/bin/mri_synthseg /opt/freesurfer/bin/mri_synthstrip +# SynB0-DISCO +COPY --from=build_synb0 /opt/synb0 /opt/synb0 +ENV SYNB0_ATLASES=/opt/synb0/atlases + ## AFNI COPY --from=build_afni /opt/afni-latest /opt/afni-latest ENV PATH="$PATH:/opt/afni-latest" \ @@ -245,7 +249,6 @@ RUN mkdir -p /sngl/data \ && mkdir /sngl/qsiprep-output \ && mkdir /sngl/out \ && mkdir /sngl/scratch \ - && mkdir /sngl/spec \ && mkdir /sngl/eddy \ && mkdir /sngl/filter \ && chmod a+rwx /sngl/*