correct ld path for mri_convert

Author: mattcieslak

Dockerfile

@@ -226,7 +226,7 @@ ENV \
     PATH=$QT_BASE_DIR/bin:$PATH \
     LD_LIBRARY_PATH=$QT_BASE_DIR/lib/x86_64-linux-gnu:$QT_BASE_DIR/lib:$LD_LIBRARY_PATH \
     PKG_CONFIG_PATH=$QT_BASE_DIR/lib/pkgconfig:$PKG_CONFIG_PATH \
-    LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nvidia/cudnn/lib
+    LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nvidia/cudnn/lib:/opt/freesurfer/lib
 
 WORKDIR /root/
 

Dockerfile_FreeSurfer

@@ -64,7 +64,7 @@ COPY --from=freesurfer \
 
 COPY --from=freesurfer \
   /lib64/libcrypt* \
-  /opt/freesurfer/mni/lib
+  /opt/freesurfer/lib/
 
 COPY --from=freesurfer \
   /usr/local/freesurfer/sources.csh \