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Add ability to ingress sMRIPrep derivatives with --datasets/--derivatives argument #884

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tsalo opened this issue Nov 19, 2024 · 1 comment
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tsalo commented Nov 19, 2024

Summary

We don't plan to directly incorporate sMRIPrep into QSIPrep, but I think it would be great to allow users to reuse existing sMRIPrep derivatives. We can use the preprocessed T1w/T2w from sMRIPrep as the "anat" space, from which the "ACPC" space can be generated.

@tsalo tsalo added the enhancement New feature or request label Nov 19, 2024
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tsalo commented Nov 19, 2024

With sMRIPrep, we should get transforms from anat to any number of output spaces. We would probably just need to take the ACPC-to-anat transform and combine it with the anat-to-template transforms from sMRIPrep to get the ACPC-to-template transforms we want for QSIPrep/QSIRecon.

@tsalo tsalo added this to the 1.1.0 milestone Nov 20, 2024
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