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Remove --taxon argument #13

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arteymix opened this issue Oct 21, 2019 · 3 comments
Open

Remove --taxon argument #13

arteymix opened this issue Oct 21, 2019 · 3 comments
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2.2.0

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@arteymix
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The information that the taxon provide is redundant because we already have the genome and the annotation reference identifiers.

For that to work, we have to update Gemma platform identifiers to use explicit Ensembl versions.
@arteymix
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It is basically useless since the information is already in Gemma. There might be some complication for the submission task though.

@arteymix
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The STAR/RSEM index is unfortunately tied to the taxon. It would be nice to avoid this.

@arteymix arteymix mentioned this issue Jan 9, 2020
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@arteymix
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We can drop the taxon requirement by using generic names for STAR/RSEM indexes.

@arteymix arteymix added this to the 2.2.0 milestone Jul 8, 2022
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