Import error

[enrico-agostini]

Hi everyone, after reinstalling the newest version of poreSpy (v2.0.2) from anaconda (conda install) I tested the module on a simple python console and I the error reported below. Do you know if this is a porespy issue or something related to my Anaconda installation/python instalation?

Thans in advance,
Enrico Agostini

In [1]: import porespy
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
<ipython-input-1-8081612b17b7> in <module>
----> 1 import porespy

~/anaconda3/lib/python3.8/site-packages/porespy/__init__.py in <module>
66 from . import filters
67 from . import metrics
---> 68 from . import networks
69 from . import generators
70 from . import dns

~/anaconda3/lib/python3.8/site-packages/porespy/networks/__init__.py in <module>
25 """
26
---> 27 from ._funcs import add_boundary_regions
28 from ._funcs import generate_voxel_image
29 from ._funcs import label_phases

~/anaconda3/lib/python3.8/site-packages/porespy/networks/_funcs.py in <module>
1 import numpy as np
----> 2 import openpnm as op
3 import scipy.ndimage as spim
4 from skimage.segmentation import find_boundaries
5 from skimage.morphology import ball, cube, disk, square

~/anaconda3/lib/python3.8/site-packages/openpnm/__init__.py in <module>
62 from . import phases
63 from . import physics
---> 64 from . import algorithms
65 from . import materials
66 from . import topotools

~/anaconda3/lib/python3.8/site-packages/openpnm/algorithms/__init__.py in <module>
11
12 from .GenericAlgorithm import GenericAlgorithm
---> 13 from .GenericTransport import GenericTransport
14
15 from .ReactiveTransport import ReactiveTransport

~/anaconda3/lib/python3.8/site-packages/openpnm/algorithms/GenericTransport.py in <module>
100 @docstr.get_sectionsf('GenericTransport', sections=['Parameters'])
101 @docstr.dedent
--> 102 class GenericTransport(GenericAlgorithm):
103 r"""
104 This class implements steady-state linear transport calculations

~/anaconda3/lib/python3.8/site-packages/openpnm/algorithms/GenericTransport.py in GenericTransport()
215 self.settings.update(**kwargs)
216
--> 217 @docstr.get_full_descriptionf(base='GenericTransport.reset')
218 @docstr.get_sectionsf(base='GenericTransport.reset', sections=['Parameters'])
219 @docstr.dedent

~/anaconda3/lib/python3.8/site-packages/docrep/decorators.py in deprecated(self, *args, **kwargs)
125 return getattr(self, replacement)(*args, **kwargs)
126 else:
--> 127 return func(self, *args, **kwargs)
128
129 else:

~/anaconda3/lib/python3.8/site-packages/docrep/__init__.py in get_full_descriptionf(self, *args, **kwargs)
989 removed_in="0.4.0")
990 def get_full_descriptionf(self, *args, **kwargs):
--> 991 return self.get_full_description(base=args[0], *args[1:], **kwargs)
992
993 @deprecated('get_extended_summary', "0.3.0", replace=False,

IndexError: tuple index out of range

[jgostick]

I think you need to update your docrep package, which is used by openpnm which is imported in PoreSpy. Do pip install --upgrade docrep

[enrico-agostini]

Hi @jgostick thanks for your reply. Indeed I had to remove openpnm and install it again because it didn't upgrade using anaconda. Now everything seems to be working fine.