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Unfortunately there's not enough information to understand what went wrong. Did the
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Hi! I am running this line of code:
nextflow run pgscatalog/pgsc_calc -profile docker --input samplesheet.csv --target_build GRCh37 --pgs_id PGS001229
When this happens, the following errors pop up:
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NOTE: Process
PGSCATALOG_PGSCALC:PGSCALC:DOWNLOAD_SCOREFILES ([pgs_id:PGS001229, pgp_id:, trait_efo:])
terminated with an error exit status (137) -- Execution is retried (1)ERROR ~ Error executing process > 'PGSCATALOG_PGSCALC:PGSCALC:MAKE_COMPATIBLE:PLINK2_VCF (stephen_vcf_subset chromosome ALL)'
Caused by:
Process
PGSCATALOG_PGSCALC:PGSCALC:MAKE_COMPATIBLE:PLINK2_VCF (stephen_vcf_subset chromosome ALL)
terminated with an error exit status (6)Tip: view the complete command output by changing to the process work dir and entering the command
cat .command.out
-- Check '.nextflow.log' file for details
ERROR ~ ERROR: No scores calculated!
-- Check '.nextflow.log' file for details
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I was wondering if anyone know how to solve this issue? Thanks.
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