{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":415950509,"defaultBranch":"main","name":"pgsc_calc","ownerLogin":"PGScatalog","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-10-11T13:59:45.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/57760981?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1720624343.0","currentOid":""},"activityList":{"items":[{"before":"cc3a26ecde9164c41620160cec30cb898cefc7c1","after":"0f33b4cff01036bb0b020ad535c4414f070a4a3c","ref":"refs/heads/main","pushedAt":"2024-07-10T13:04:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"bump version","shortMessageHtmlLink":"bump version"}},{"before":null,"after":"cc3a26ecde9164c41620160cec30cb898cefc7c1","ref":"refs/heads/dev","pushedAt":"2024-07-10T09:57:21.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"Write consistent column sets to variant information files (#330)\n\n* write only mandatory pvar columns\r\n\r\n* Fix samplesheet parsing error warnings (#322)\r\n\r\n* Update SamplesheetParser.groovy\r\n\r\n* fix multiple samplesheet error message\r\n\r\n---------\r\n\r\nCo-authored-by: Benjamin Wingfield \r\n\r\n---------\r\n\r\nCo-authored-by: Sam Lambert ","shortMessageHtmlLink":"Write consistent column sets to variant information files (#330)"}},{"before":"ba5d0f810ab591b377224d7619182fc6d6cdd7d3","after":null,"ref":"refs/heads/dev","pushedAt":"2024-07-10T09:55:32.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"}},{"before":null,"after":"148f1fdbbfd7ab7fa1170d94f7c5064bff54a8ff","ref":"refs/heads/docs-review","pushedAt":"2024-07-10T09:54:49.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"Remove references to multiple cohorts","shortMessageHtmlLink":"Remove references to multiple cohorts"}},{"before":"ccfd6367d55eee6d81c36541248d757ebacf6c7e","after":"cc3a26ecde9164c41620160cec30cb898cefc7c1","ref":"refs/heads/main","pushedAt":"2024-07-04T10:00:17.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"Write consistent column sets to variant information files (#330)\n\n* write only mandatory pvar columns\r\n\r\n* Fix samplesheet parsing error warnings (#322)\r\n\r\n* Update SamplesheetParser.groovy\r\n\r\n* fix multiple samplesheet error message\r\n\r\n---------\r\n\r\nCo-authored-by: Benjamin Wingfield \r\n\r\n---------\r\n\r\nCo-authored-by: Sam Lambert ","shortMessageHtmlLink":"Write consistent column sets to variant information files (#330)"}},{"before":"c13f7220147ffc887eddaee1ad2ced7652491f86","after":"ba5d0f810ab591b377224d7619182fc6d6cdd7d3","ref":"refs/heads/dev","pushedAt":"2024-07-01T16:14:28.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"Merge branch 'main' into dev","shortMessageHtmlLink":"Merge branch 'main' into dev"}},{"before":"b0fb148b4a8b78ab218c7867d29807f3f9243bcb","after":"c13f7220147ffc887eddaee1ad2ced7652491f86","ref":"refs/heads/dev","pushedAt":"2024-07-01T15:15:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"Fix samplesheet parsing error warnings (#322)\n\n* Update SamplesheetParser.groovy\r\n\r\n* fix multiple samplesheet error message\r\n\r\n---------\r\n\r\nCo-authored-by: Benjamin Wingfield ","shortMessageHtmlLink":"Fix samplesheet parsing error warnings (#322)"}},{"before":"ca334fa575c1f34a793b461c2587ee45b3d85649","after":"b0fb148b4a8b78ab218c7867d29807f3f9243bcb","ref":"refs/heads/dev","pushedAt":"2024-07-01T15:13:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"write only mandatory pvar columns","shortMessageHtmlLink":"write only mandatory pvar columns"}},{"before":"717a5651f1f1d089661ad8d2f5dbc1b004cc7623","after":null,"ref":"refs/heads/272-check-sampleset-id-doesnt-include-and-underscore-_","pushedAt":"2024-06-20T09:13:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"}},{"before":"ca334fa575c1f34a793b461c2587ee45b3d85649","after":"ccfd6367d55eee6d81c36541248d757ebacf6c7e","ref":"refs/heads/main","pushedAt":"2024-06-20T09:13:06.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"Fix samplesheet parsing error warnings (#322)\n\n* Update SamplesheetParser.groovy\r\n\r\n* fix multiple samplesheet error message\r\n\r\n---------\r\n\r\nCo-authored-by: Benjamin Wingfield ","shortMessageHtmlLink":"Fix samplesheet parsing error warnings (#322)"}},{"before":"c2daeab38aabfb56d52ffb9132f7a9e79a4880cf","after":"717a5651f1f1d089661ad8d2f5dbc1b004cc7623","ref":"refs/heads/272-check-sampleset-id-doesnt-include-and-underscore-_","pushedAt":"2024-06-20T09:02:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"fix multiple samplesheet error message","shortMessageHtmlLink":"fix multiple samplesheet error message"}},{"before":null,"after":"ca334fa575c1f34a793b461c2587ee45b3d85649","ref":"refs/heads/dev","pushedAt":"2024-06-20T08:27:28.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"fix conda package name","shortMessageHtmlLink":"fix conda package name"}},{"before":"ca334fa575c1f34a793b461c2587ee45b3d85649","after":"c2daeab38aabfb56d52ffb9132f7a9e79a4880cf","ref":"refs/heads/272-check-sampleset-id-doesnt-include-and-underscore-_","pushedAt":"2024-06-19T19:45:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"smlmbrt","name":"Sam Lambert","path":"/smlmbrt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4139843?s=80&v=4"},"commit":{"message":"Update SamplesheetParser.groovy","shortMessageHtmlLink":"Update SamplesheetParser.groovy"}},{"before":null,"after":"ca334fa575c1f34a793b461c2587ee45b3d85649","ref":"refs/heads/272-check-sampleset-id-doesnt-include-and-underscore-_","pushedAt":"2024-06-19T19:43:59.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"smlmbrt","name":"Sam Lambert","path":"/smlmbrt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4139843?s=80&v=4"},"commit":{"message":"fix conda package name","shortMessageHtmlLink":"fix conda package name"}},{"before":"b6b83cd174f5696771459b2368e1eb0a68d4d4bd","after":"ca334fa575c1f34a793b461c2587ee45b3d85649","ref":"refs/heads/main","pushedAt":"2024-06-19T18:40:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"fix conda package name","shortMessageHtmlLink":"fix conda package name"}},{"before":"b6b83cd174f5696771459b2368e1eb0a68d4d4bd","after":null,"ref":"refs/tags/v2.0.0-beta","pushedAt":"2024-06-19T18:39:37.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"}},{"before":"eaa553a9a46ce994f1d3f82b2e4887c35a01cf7e","after":"b6b83cd174f5696771459b2368e1eb0a68d4d4bd","ref":"refs/heads/main","pushedAt":"2024-06-19T15:56:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"Update changelog.rst","shortMessageHtmlLink":"Update changelog.rst"}},{"before":"c64a703f18af41eb97f4fb1afd6e3a7587b984c1","after":null,"ref":"refs/heads/dev","pushedAt":"2024-06-19T15:52:40.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"}},{"before":"45326ac0666b074f655f7870918e184455a6c3f3","after":"eaa553a9a46ce994f1d3f82b2e4887c35a01cf7e","ref":"refs/heads/main","pushedAt":"2024-06-19T15:52:36.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"v2.0.0-beta (#318)\n\n* use dev version of pygscatalog\r\nuse dev version of pgscatalog-utils\r\n\r\n* fix versions\r\n\r\n* update images\r\n\r\n* Add match error explanation to docs (#311)\r\n\r\n* add match explanation\r\n\r\n* Update match.rst\r\n\r\nSome edits\r\n\r\n---------\r\n\r\nCo-authored-by: Sam Lambert \r\n\r\n* Explicitly declare plugins in nextflow.config (#315)\r\n\r\n* declare plugins explicitly\r\n\r\n* add provenance to pipeline_info output\r\n\r\n* update citation string\r\n\r\n* remove deprecated parameter\r\n\r\n* nf-schema migration updates\r\n\r\n* fix validation parameter case\r\n\r\n* update help message to use nf-schema\r\n\r\n* update offline instructions with plugin information\r\n\r\n* fix typo\r\n\r\n* bump fraposa_pgsc version\r\n\r\n* disable nf-schema validateparameters() for now\r\n\r\n* update conda environments\r\n\r\n* update pyyaml environment\r\n\r\n* bump pgscatalog-utils to v1.1.1\r\n\r\n* bump version to beta\r\n\r\n* drop defaults channel from conda environment\r\n\r\n* bump pgscatalog-utils version\r\n\r\n* trigger action\r\n\r\n---------\r\n\r\nCo-authored-by: Sam Lambert ","shortMessageHtmlLink":"v2.0.0-beta (#318)"}},{"before":"50f2507a1852437288a6db7960fa2681e5a8d044","after":"c64a703f18af41eb97f4fb1afd6e3a7587b984c1","ref":"refs/heads/dev","pushedAt":"2024-06-19T15:13:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"trigger action","shortMessageHtmlLink":"trigger action"}},{"before":"2d5b48a8aead6ae6ece7457b949adb922a3b7717","after":"50f2507a1852437288a6db7960fa2681e5a8d044","ref":"refs/heads/dev","pushedAt":"2024-06-19T14:34:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"bump pgscatalog-utils version","shortMessageHtmlLink":"bump pgscatalog-utils version"}},{"before":"4c8ab4df02b9a0cdd50ef198296dc607debbaf43","after":"2d5b48a8aead6ae6ece7457b949adb922a3b7717","ref":"refs/heads/dev","pushedAt":"2024-06-19T13:01:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"drop defaults channel from conda environment","shortMessageHtmlLink":"drop defaults channel from conda environment"}},{"before":"c05b6a78263c523f7e1127e898695c0cac7ad652","after":"4c8ab4df02b9a0cdd50ef198296dc607debbaf43","ref":"refs/heads/dev","pushedAt":"2024-06-18T12:37:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"bump version to beta","shortMessageHtmlLink":"bump version to beta"}},{"before":"ee25d58073361a01f7cde07c7ea4476df85e6aa8","after":"c05b6a78263c523f7e1127e898695c0cac7ad652","ref":"refs/heads/dev","pushedAt":"2024-06-18T12:35:40.000Z","pushType":"push","commitsCount":14,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"Merge branch 'main' into dev","shortMessageHtmlLink":"Merge branch 'main' into dev"}},{"before":"c11f8f6dae8c5a41665e89a43d1f6d8600ee9459","after":"ee25d58073361a01f7cde07c7ea4476df85e6aa8","ref":"refs/heads/dev","pushedAt":"2024-06-18T12:28:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"bump pgscatalog-utils to v1.1.1","shortMessageHtmlLink":"bump pgscatalog-utils to v1.1.1"}},{"before":"41b6f23928208d13814d84491f25f078ed2d70e4","after":"c11f8f6dae8c5a41665e89a43d1f6d8600ee9459","ref":"refs/heads/dev","pushedAt":"2024-06-18T10:56:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"update pyyaml environment","shortMessageHtmlLink":"update pyyaml environment"}},{"before":"cb3d6c5840a92f85390454cd85412dbec59f454f","after":"41b6f23928208d13814d84491f25f078ed2d70e4","ref":"refs/heads/dev","pushedAt":"2024-06-18T10:18:34.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"update conda environments","shortMessageHtmlLink":"update conda environments"}},{"before":"b5cf6692fb8e9f746b3ecbda1bacd246bac716eb","after":"cb3d6c5840a92f85390454cd85412dbec59f454f","ref":"refs/heads/dev","pushedAt":"2024-06-17T16:01:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"bump fraposa_pgsc version","shortMessageHtmlLink":"bump fraposa_pgsc version"}},{"before":"a044892bfd0cc208b82657e3b7208798302c81d8","after":null,"ref":"refs/heads/nf-schema","pushedAt":"2024-06-17T09:27:49.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"}},{"before":"f2f9565a858c828c123aba955ce7b0c1e32665c0","after":"b5cf6692fb8e9f746b3ecbda1bacd246bac716eb","ref":"refs/heads/dev","pushedAt":"2024-06-17T09:27:45.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"nebfield","name":"Benjamin Wingfield","path":"/nebfield","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11425618?s=80&v=4"},"commit":{"message":"Explicitly declare plugins in nextflow.config (#315)\n\n* declare plugins explicitly\r\n\r\n* add provenance to pipeline_info output\r\n\r\n* update citation string\r\n\r\n* remove deprecated parameter\r\n\r\n* nf-schema migration updates\r\n\r\n* fix validation parameter case\r\n\r\n* update help message to use nf-schema\r\n\r\n* update offline instructions with plugin information\r\n\r\n* fix typo","shortMessageHtmlLink":"Explicitly declare plugins in nextflow.config (#315)"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEe8OyuQA","startCursor":null,"endCursor":null}},"title":"Activity ยท PGScatalog/pgsc_calc"}