diff --git a/doc/documentation_data_format.rst b/doc/documentation_data_format.rst index 64bf5a39..cfd9298a 100644 --- a/doc/documentation_data_format.rst +++ b/doc/documentation_data_format.rst @@ -340,7 +340,9 @@ Detailed field description Observation function as plain text formula expression. May contain any symbol defined in the SBML model (including model time ``time``) or parameter table. In the simplest case just an SBML species ID - or an ``AssignmentRule`` target. + or an ``AssignmentRule`` target. Additionally, any observable ID + introduced in the observable table may be referenced, but circular definitions + must be avoided. May introduce new parameters of the form ``observableParameter${n}_${observableId}``, which are overridden by ``observableParameters`` in the measurement table @@ -362,7 +364,11 @@ Detailed field description observable. Alternatively, some formula expression can be provided to specify - more complex noise models. A noise model which accounts for relative and + more complex noise models. The formula may reference any uniquely identifiable + model entity with PEtab-compatible identifier or any observable ID + specified in the observable table. + + A noise model which accounts for relative and absolute contributions could, e.g., be defined as:: noiseParameter1_observable_pErk + noiseParameter2_observable_pErk*pErk