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fix(protocol-designer): fix layout for ProtocolSteps (#16959)
This PR fixes the layout for protocol steps, acocunting for TimelineAlerts. To maintain position without flickering when hovering timeline steps, we align the center content to the top of the container, and provide top padding dependent on the presence of timeline alerts. We also fix logic to not show timeline alerts if a stepform toolbox is open. Lastly, we make the container scrollable to handle timeline alerts and step summaries rendering at the same time, and set the timeline, stepform, and substeps toolbox heights to fill the view height with padding.
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