Grab reset flags on startup #250

	name: 'Code Coverage'
	on:
	pull_request:
	push:
	branches:
	- 'edge'
	workflow_dispatch:

	defaults:
	run:
	shell: bash


	jobs:
	generate-coverage:
	name: 'Generate-Coverage'
	runs-on: 'ubuntu-20.04'
	timeout-minutes: 10
	env:
	CC: gcc-10
	CXX: g++-10
	steps:
	- run: \|
	sudo apt update
	sudo apt install gcc-10 g++-10 lcov
	- uses: actions/setup-python@v4
	with:
	python-version: '3.10'
	- name: 'Install lcov_cobertura module'
	run: pip install lcov_cobertura
	- uses: 'actions/checkout@v2'
	with:
	fetch-depth: 0
	- uses: 'actions/cache@v2'
	with:
	path: './stm32-tools'
	key: stm32-host-${{ secrets.MODULES_STM32_CACHE_VERSION }}-${{ hashFiles('cmake/*') }}
	restore-keys: stm32-host-${{ secrets.MODULES_STM32_CACHE_VERSION }}-
	- name: 'Configure'
	run: cmake --preset=stm32-host -DENABLE_COVERAGE=On -DCMAKE_BUILD_TYPE=Debug
	- name: 'Run all stm32 tests'
	run: \|
	cmake --build --preset host --target common-build-and-test
	cmake --build --preset host --target thermocycler-gen2-build-and-test
	cmake --build --preset host --target heater-shaker-build-and-test
	cmake --build --preset host --target tempdeck-gen3-build-and-test
	- name: 'Generate coverage'
	run: cmake --build --preset host --target lcov-geninfo
	- name: 'Convert coverage to xml'
	run: lcov_cobertura build-stm32-host/lcov/data/capture/all_targets.info
	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	files: ./coverage.xml
	name: codecov-stm32-modules
	fail_ci_if_error: true

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