chore(Release): 2024-07-12

data/data/fields.csv

@@ -266,7 +266,6 @@ csv3_samp,1
 csv3_urea,1
 csv_aq,1
 csv_buff,1
-csv_factors,1
 csv_file,2
 csv_file_1,1
 csv_file_2,1
@@ -1202,7 +1201,7 @@ relative_height,1
 remove_empty_racks,1
 remove_tube_vol,1
 replenish_tips_manually,1
-reps_mix,2
+reps_mix,1
 res,2
 res12_type,1
 res1_type,1
@@ -1393,6 +1392,7 @@ start_buff_vol,1
 start_col,2
 start_column,1
 start_index_tip,1
+start_place,1
 start_tip,3
 start_tip_p20,2
 start_tip_p300,2
@@ -1602,7 +1602,6 @@ twelve_well_resv_lname,1
 type_matrix,1
 type_molecule,1
 type_pip,2
-type_pipette_small,1
 type_sample_rack,1
 type_tc,1
 udi_start_col,1
@@ -1668,9 +1667,8 @@ vol_ic,1
 vol_initial,1
 vol_lys_buffer,1
 vol_lysis_mix,1
-vol_media_tubes,1
 vol_meoh,1
-vol_mix,2
+vol_mix,1
 vol_mm,3
 vol_mobile_phase,1
 vol_mq,1

protoBuilds/4a0be6/4a0be6.ot2.apiv2.py.json

@@ -1,5 +1,5 @@
 {
-    "content": "import math\nfrom opentrons.protocol_api.labware import Well\n\nmetadata = {\n    'protocolName': 'Tube Filling',\n    'author': 'Opentrons <[email protected]>',\n    'source': 'Custom Protocol Request',\n    'apiLevel': '2.11'\n}\n\n\ndef run(protocol):\n    [transferVol, tubeRacks, tubeType, numRacks, srcType, srcVol,\n     pipType, pipMnt, startTip, dispMode, touchTip] = get_values(  # noqa: F821\n     'transferVol', 'tubeRacks', 'tubeType', 'numRacks', 'srcType', 'srcVol',\n     'pipType', 'pipMnt', 'startTip', 'dispMode', 'touchTip')\n\n    # Load labware and pipettes\n\n    tipNum = pipType.split('_')[0][1:]\n    tipNum = '300' if tipNum == '50' else tipNum\n    tipType = f'opentrons_96_tiprack_{tipNum}ul'\n    tips = [protocol.load_labware(tipType, '11')]\n    pip = protocol.load_instrument(pipType, pipMnt, tip_racks=tips)\n\n    firstTip = startTip[0].upper()+str(int(startTip[1:]))\n    pip.starting_tip = tips[0][firstTip]\n\n    srcLabware = protocol.load_labware(srcType, '1')\n\n    destRacks = [\n        protocol.load_labware(tubeRacks+tubeType, slot) for slot in range(\n            2, 2+numRacks)]\n\n    # Functions and Class creation\n    class WellH(Well):\n        def __init__(self, well, min_height=5, comp_coeff=1.15,\n                     current_volume=0):\n            super().__init__(well._impl)\n            self.well = well\n            self.min_height = min_height\n            self.comp_coeff = comp_coeff\n            self.current_volume = current_volume\n            if self.diameter is not None:\n                self.radius = self.diameter/2\n                cse = math.pi*(self.radius**2)\n            elif self.length is not None:\n                cse = self.length*self.width\n            self.height = (\n             current_volume/cse) - (0.2*pip._tip_racks[0].wells()[0].depth)\n            if self.height < min_height:\n                self.height = min_height\n            elif self.height > well.parent.highest_z:\n                raise Exception(\"\"\"Specified liquid volume\n                can not exceed the height of the labware.\"\"\")\n\n        def height_dec(self, vol):\n            if self.diameter is not None:\n                cse = math.pi*(self.radius**2)\n            elif self.length is not None:\n                cse = self.length*self.width\n            dh = (vol/cse)*self.comp_coeff\n            if self.height - dh > self.min_height:\n                self.height = self.height - dh\n            else:\n                self.height = self.min_height\n            if self.current_volume - vol > 0:\n                self.current_volume = self.current_volume - vol\n            else:\n                self.current_volume = 0\n            return(self.well.bottom(self.height))\n\n        def height_inc(self, vol, top=False):\n            if self.diameter is not None:\n                cse = math.pi*(self.radius**2)\n            elif self.length is not None:\n                cse = self.length*self.width\n            ih = (vol/cse)*self.comp_coeff\n            if self.height < self.min_height:\n                self.height = self.min_height\n            if self.height + ih < self.depth:\n                self.height = self.height + ih\n            else:\n                self.height = self.depth\n            self.current_volume += vol\n            if top is False:\n                return(self.well.bottom(self.height))\n            else:\n                return(self.well.top())\n\n    def yield_groups(list, num):\n        \"\"\"\n        yield lists based on number of items\n        \"\"\"\n        for i in range(0, len(list), num):\n            yield list[i:i+num]\n\n    # get number of distributes pipette can handle\n    distribute_num = pip.max_volume // transferVol\n    if distribute_num < 1:\n        # if transfer volume is greater than pipette max volume,\n        # use Transfer mode\n        dispMode = 'Transfer'\n\n    # create source location with WellH\n    source = WellH(\n        srcLabware.wells()[0], min_height=3, current_volume=srcVol*1000)\n\n    # Protocol: Tube filling\n    pip.pick_up_tip()\n    all_wells = [well for tuberack in destRacks for well in tuberack.wells()]\n    if dispMode == 'Transfer':\n        for dest in all_wells:\n            pip.transfer(\n                transferVol, source.height_dec(transferVol), dest,\n                touch_tip=touchTip, new_tip='never')\n    else:\n        well_groups = list(yield_groups(all_wells, int(distribute_num)))\n        for wells in well_groups:\n            pip.distribute(\n                transferVol, source.height_dec(transferVol), wells,\n                blow_out=source, touch_tip=touchTip, new_tip='never')\n    pip.drop_tip()\n",
+    "content": "import math\nfrom opentrons.protocol_api.labware import Well\n\nfrom opentrons import APIVersion\n\nmetadata = {\n    'protocolName': 'Tube Filling',\n    'author': 'Opentrons <[email protected]>',\n    'source': 'Custom Protocol Request',\n    'apiLevel': '2.13'\n}\n\n\ndef run(protocol):\n    [transferVol, tubeRacks, tubeType, numRacks, srcType, srcVol,\n     pipType, pipMnt, startTip, dispMode, touchTip] = get_values(  # noqa: F821\n     'transferVol', 'tubeRacks', 'tubeType', 'numRacks', 'srcType', 'srcVol',\n     'pipType', 'pipMnt', 'startTip', 'dispMode', 'touchTip')\n\n    # Load labware and pipettes\n\n    tipNum = pipType.split('_')[0][1:]\n    tipNum = '300' if tipNum == '50' else tipNum\n    tipType = f'opentrons_96_tiprack_{tipNum}ul'\n    tips = [protocol.load_labware(tipType, '11')]\n    pip = protocol.load_instrument(pipType, pipMnt, tip_racks=tips)\n\n    firstTip = startTip[0].upper()+str(int(startTip[1:]))\n    pip.starting_tip = tips[0][firstTip]\n\n    srcLabware = protocol.load_labware(srcType, '1')\n\n    destRacks = [\n        protocol.load_labware(tubeRacks+tubeType, slot) for slot in range(\n            2, 2+numRacks)]\n\n    # Functions and Class creation\n    if not protocol.is_simulating:\n        class WellH(Well):\n            def __init__(self, well, height=0, min_height=5, comp_coeff=1.15,\n                         current_volume=0):\n                # Change one is that we deprecated well._impl\n                super().__init__(well.parent, well._core, APIVersion(2, 13))\n                self.well = well\n                self.height = height\n                self.min_height = min_height\n                self.comp_coeff = comp_coeff\n                self.radius = self.diameter / 2\n                self.current_volume = current_volume\n\n            def height_dec(self, vol):\n                dh = (vol / (math.pi * (self.radius ** 2))) * self.comp_coeff\n                if self.height - dh > self.min_height:\n                    self.height = self.height - dh\n                else:\n                    self.height = self.min_height\n                if self.current_volume - vol > 0:\n                    self.current_volume = self.current_volume - vol\n                else:\n                    self.current_volume = 0\n                return (self.well.bottom(self.height))\n\n            def height_inc(self, vol):\n                dh = (vol / (math.pi * (self.radius ** 2))) * self.comp_coeff\n                if self.height + dh < self.depth:\n                    self.height = self.height + dh\n                else:\n                    self.height = self.depth\n                self.current_volume += vol\n                return (self.well.bottom(self.height + 20))\n\n        def yield_groups(list, num):\n            \"\"\"\n            yield lists based on number of items\n            \"\"\"\n            for i in range(0, len(list), num):\n                yield list[i:i+num]\n\n        # get number of distributes pipette can handle\n        distribute_num = pip.max_volume // transferVol\n        if distribute_num < 1:\n            # if transfer volume is greater than pipette max volume,\n            # use Transfer mode\n            dispMode = 'Transfer'\n\n        # create source location with WellH\n        source = WellH(\n            srcLabware.wells()[0], min_height=3, current_volume=srcVol*1000)\n\n        # Protocol: Tube filling\n        pip.pick_up_tip()\n        all_wells = [well for tuberack in destRacks\n                     for well in tuberack.wells()]\n        if dispMode == 'Transfer':\n            for dest in all_wells:\n                pip.transfer(\n                    transferVol, source.height_dec(transferVol), dest,\n                    touch_tip=touchTip, new_tip='never')\n        else:\n            well_groups = list(yield_groups(all_wells, int(distribute_num)))\n            for wells in well_groups:\n                pip.distribute(\n                    transferVol, source.height_dec(transferVol), wells,\n                    blow_out=source, touch_tip=touchTip, new_tip='never')\n        pip.drop_tip()\n",
     "custom_labware_defs": [
         {
             "brand": {
@@ -3551,7 +3551,7 @@
         }
     ],
     "metadata": {
-        "apiLevel": "2.11",
+        "apiLevel": "2.13",
         "author": "Opentrons <[email protected]>",
         "protocolName": "Tube Filling",
         "source": "Custom Protocol Request"