{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":614010709,"defaultBranch":"main","name":"konnektor","ownerLogin":"OpenFreeEnergy","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-03-14T17:57:42.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/92118939?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1724761219.0","currentOid":""},"activityList":{"items":[{"before":"f1b82d111dd22bac18a705fa16c8ececfd4245b7","after":"6008a6535fbbc4ff04e1c66e810ae07bed7e5fc3","ref":"refs/heads/build_v1","pushedAt":"2024-08-28T20:15:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"refactor analysis function names","shortMessageHtmlLink":"refactor analysis function names"}},{"before":null,"after":"f1b82d111dd22bac18a705fa16c8ececfd4245b7","ref":"refs/heads/IA_notebook_edits","pushedAt":"2024-08-27T12:20:19.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"IAlibay","name":"Irfan Alibay","path":"/IAlibay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12460125?s=80&v=4"},"commit":{"message":"Documentation_improvements: Jupyter Examples (#58)\n\nchanged jupyter notebooks.","shortMessageHtmlLink":"Documentation_improvements: Jupyter Examples (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2463228138\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenFreeEnergy/konnektor/issues/58\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenFreeEnergy/konnektor/pull/58/hovercard\" href=\"https://github.com/OpenFreeEnergy/konnektor/pull/58\">#58</a>)"}},{"before":"d331c222c6411cf51b2fa9207bdb1cefa2693dde","after":"f1b82d111dd22bac18a705fa16c8ececfd4245b7","ref":"refs/heads/build_v1","pushedAt":"2024-08-27T11:57:22.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Documentation_improvements: Jupyter Examples (#58)\n\nchanged jupyter notebooks.","shortMessageHtmlLink":"Documentation_improvements: Jupyter Examples (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2463228138\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenFreeEnergy/konnektor/issues/58\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenFreeEnergy/konnektor/pull/58/hovercard\" href=\"https://github.com/OpenFreeEnergy/konnektor/pull/58\">#58</a>)"}},{"before":"af3e91f6736577aede8276f703601b6b2aebd8e3","after":"1bf7103c6415cdaf2a4f2a29ff7f389496ccd38e","ref":"refs/heads/documentation_improvements","pushedAt":"2024-08-21T12:39:23.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Merge branch 'build_v1' into documentation_improvements","shortMessageHtmlLink":"Merge branch 'build_v1' into documentation_improvements"}},{"before":"af0a8448f1b9d7fcd0c6fb11a2de6edfbf118c78","after":"3737c2e387aa2238fab5dbbf1390107f3ceb3707","ref":"refs/heads/sphinx_docs","pushedAt":"2024-08-21T12:38:14.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"merge","shortMessageHtmlLink":"merge"}},{"before":null,"after":"af0a8448f1b9d7fcd0c6fb11a2de6edfbf118c78","ref":"refs/heads/sphinx_docs","pushedAt":"2024-08-21T12:35:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"fix widget","shortMessageHtmlLink":"fix widget"}},{"before":"de935c0ab0ded5a656c930e3dd49ce4fe0b828d6","after":"d331c222c6411cf51b2fa9207bdb1cefa2693dde","ref":"refs/heads/build_v1","pushedAt":"2024-08-21T12:34:07.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"git Merge branch 'build_v1' of github.com:OpenFreeEnergy/konnektor into build_v1","shortMessageHtmlLink":"git Merge branch 'build_v1' of github.com:OpenFreeEnergy/konnektor in…"}},{"before":"9c00002bb82d736069b9d155a19f40193c911932","after":"af3e91f6736577aede8276f703601b6b2aebd8e3","ref":"refs/heads/documentation_improvements","pushedAt":"2024-08-21T11:30:48.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Merge branch 'build_v1' into documentation_improvements","shortMessageHtmlLink":"Merge branch 'build_v1' into documentation_improvements"}},{"before":"ef0f26a61c70320112a7bac3ff7b8702b20d590b","after":null,"ref":"refs/heads/adding_optional_import_ipycytoscape","pushedAt":"2024-08-21T10:57:07.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"}},{"before":"939f11cb6a4b342b3c7183c0386892302ba36df5","after":"de935c0ab0ded5a656c930e3dd49ce4fe0b828d6","ref":"refs/heads/build_v1","pushedAt":"2024-08-21T10:57:03.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Adding optional import ipycytoscape (#63)\n\n\r\n* parallelization bug fix\r\n\r\n* example: adding charge data\r\n\r\n* widget scroll sensitivity improvement.\r\n\r\n* bug fix clusteredNetworker understands now own default.\r\n\r\n* Changes:\r\n  * analysis:\r\n* minor modifications on cycle analysis (only check for cylce of size 3 per default)\r\n* make delete more performant, by deleting multiple transformations/components at once if wanted.\r\n* adding graph cost and efficiency\r\n\r\n  * jnbs:\r\n*Adding text to Example JnB.\r\n\r\nnetwork -planners:\r\n* minor refactors\r\n* display fix, correct number of expected edges.\r\n\r\n* minor text improvments\r\n\r\n* Changes:\r\n- Notebook improvements, more documentation, black formatting\r\n- improving network generator documentation\r\n- vscode -> gitignore\r\n\r\n* applied black to code.\r\n\r\n* adding pre-commit and dependencies\r\n\r\n* make ipycytoscape optional.","shortMessageHtmlLink":"Adding optional import ipycytoscape (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2471914129\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenFreeEnergy/konnektor/issues/63\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenFreeEnergy/konnektor/pull/63/hovercard\" href=\"https://github.com/OpenFreeEnergy/konnektor/pull/63\">#63</a>)"}},{"before":"71c0ead5f0ca76773aaf516e2ff22ae8e22f4d07","after":"ef0f26a61c70320112a7bac3ff7b8702b20d590b","ref":"refs/heads/adding_optional_import_ipycytoscape","pushedAt":"2024-08-21T10:55:04.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"merge.","shortMessageHtmlLink":"merge."}},{"before":"af0a8448f1b9d7fcd0c6fb11a2de6edfbf118c78","after":null,"ref":"refs/heads/refactor_black","pushedAt":"2024-08-21T10:46:47.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"}},{"before":"193a55d3710022b7ab255faf6378039148c54539","after":"939f11cb6a4b342b3c7183c0386892302ba36df5","ref":"refs/heads/build_v1","pushedAt":"2024-08-21T10:46:32.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Refactor black (#62)\n\n* Update visualisation of molecules to 2D\r\n\r\n* parallelization bug fix\r\n\r\n* example: adding charge data\r\n\r\n* widget scroll sensitivity improvement.\r\n\r\n* bug fix clusteredNetworker understands now own default.\r\n\r\n* Changes:\r\n  * analysis:\r\n* minor modifications on cycle analysis (only check for cylce of size 3 per default)\r\n* make delete more performant, by deleting multiple transformations/components at once if wanted.\r\n* adding graph cost and efficiency\r\n\r\n  * jnbs:\r\n*Adding text to Example JnB.\r\n\r\nnetwork -planners:\r\n* minor refactors\r\n* display fix, correct number of expected edges.\r\n\r\n* minor text improvments\r\n\r\n* Update widget.py\r\n\r\npassing variable trough from top to bottom.\r\n\r\n* Changes:\r\n- Notebook improvements, more documentation, black formatting\r\n- improving network generator documentation\r\n- vscode -> gitignore\r\n\r\n* applied black to code.\r\n\r\n* adding pre-commit and dependencies\r\n\r\n* fixing konnektor_networks.ipynb.\r\n\r\n* fixing konnektor_networks.ipynb.\r\n\r\n* fixing konnektor_example.ipynb.\r\n\r\n* Update pyproject.toml\r\n\r\n* fix networks.ipynb\r\n\r\n* fix widget\r\n\r\n---------\r\n\r\nCo-authored-by: Julicancode <thethreevws@gmail.com>","shortMessageHtmlLink":"Refactor black (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2471903458\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenFreeEnergy/konnektor/issues/62\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenFreeEnergy/konnektor/pull/62/hovercard\" href=\"https://github.com/OpenFreeEnergy/konnektor/pull/62\">#62</a>)"}},{"before":null,"after":"193a55d3710022b7ab255faf6378039148c54539","ref":"refs/heads/build_v1","pushedAt":"2024-08-21T10:36:15.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Merge pull request #50 from OpenFreeEnergy/twin_star\n\nTwin star Network","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2345361658\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenFreeEnergy/konnektor/issues/50\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenFreeEnergy/konnektor/pull/50/hovercard\" href=\"https://github.com/OpenFreeEnergy/konnektor/pull/50\">#50</a> from OpenFreeEnergy/twin_star"}},{"before":"fc7f20e43225a6632b0df2212705ae4216b5ffe7","after":"af0a8448f1b9d7fcd0c6fb11a2de6edfbf118c78","ref":"refs/heads/refactor_black","pushedAt":"2024-08-21T10:30:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"fix widget","shortMessageHtmlLink":"fix widget"}},{"before":"64fd89db767a64ce1d53e63656a6934a36eca25c","after":"fc7f20e43225a6632b0df2212705ae4216b5ffe7","ref":"refs/heads/refactor_black","pushedAt":"2024-08-21T10:20:25.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Merge branch 'documentation_improvements' into refactor_black","shortMessageHtmlLink":"Merge branch 'documentation_improvements' into refactor_black"}},{"before":"61e88535364335b84d155bf8f0fd858df6fb6c76","after":"9c00002bb82d736069b9d155a19f40193c911932","ref":"refs/heads/documentation_improvements","pushedAt":"2024-08-21T10:15:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"fix networks.ipynb","shortMessageHtmlLink":"fix networks.ipynb"}},{"before":"dbb68e63bad099b37166db997e23117d96725a70","after":"61e88535364335b84d155bf8f0fd858df6fb6c76","ref":"refs/heads/documentation_improvements","pushedAt":"2024-08-21T05:50:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Update pyproject.toml","shortMessageHtmlLink":"Update pyproject.toml"}},{"before":"54086783037be0839587781818313ff8dca0807b","after":"64fd89db767a64ce1d53e63656a6934a36eca25c","ref":"refs/heads/refactor_black","pushedAt":"2024-08-21T05:43:39.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Merge pull request #52 from Julicancode/3D_to_2D\n\nUpdate visualisation of molecules to 2D","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2397912512\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenFreeEnergy/konnektor/issues/52\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenFreeEnergy/konnektor/pull/52/hovercard\" href=\"https://github.com/OpenFreeEnergy/konnektor/pull/52\">#52</a> from Julicancode/3D_to_2D"}},{"before":null,"after":"71c0ead5f0ca76773aaf516e2ff22ae8e22f4d07","ref":"refs/heads/adding_optional_import_ipycytoscape","pushedAt":"2024-08-18T11:05:42.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"make ipycytoscape optional.","shortMessageHtmlLink":"make ipycytoscape optional."}},{"before":"54086783037be0839587781818313ff8dca0807b","after":"dbb68e63bad099b37166db997e23117d96725a70","ref":"refs/heads/documentation_improvements","pushedAt":"2024-08-18T10:57:59.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"fixing konnektor_example.ipynb.","shortMessageHtmlLink":"fixing konnektor_example.ipynb."}},{"before":"c087039c7f15f94da2fb66d8b8c117ba656cb8f5","after":"54086783037be0839587781818313ff8dca0807b","ref":"refs/heads/documentation_improvements","pushedAt":"2024-08-18T10:54:26.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"adding pre-commit and dependencies","shortMessageHtmlLink":"adding pre-commit and dependencies"}},{"before":null,"after":"54086783037be0839587781818313ff8dca0807b","ref":"refs/heads/refactor_black","pushedAt":"2024-08-18T10:34:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"adding pre-commit and dependencies","shortMessageHtmlLink":"adding pre-commit and dependencies"}},{"before":null,"after":"aad75883f498b25ceae13f5bb3888f0c5e4860ad","ref":"refs/heads/n_nodes_edges_fix","pushedAt":"2024-08-16T11:40:33.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"fix algorithm","shortMessageHtmlLink":"fix algorithm"}},{"before":"2d22256dcc4c84877fb8a43bcc585cf06738a90e","after":"c087039c7f15f94da2fb66d8b8c117ba656cb8f5","ref":"refs/heads/documentation_improvements","pushedAt":"2024-08-16T11:39:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Changes:\n- Notebook improvements, more documentation, black formatting\n- improving network generator documentation\n- vscode -> gitignore","shortMessageHtmlLink":"Changes:"}},{"before":"296a0f8c420c0a2b4731ea0f5d4cebfadf223d6b","after":"2d22256dcc4c84877fb8a43bcc585cf06738a90e","ref":"refs/heads/documentation_improvements","pushedAt":"2024-08-13T12:34:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"minor text improvments","shortMessageHtmlLink":"minor text improvments"}},{"before":null,"after":"296a0f8c420c0a2b4731ea0f5d4cebfadf223d6b","ref":"refs/heads/documentation_improvements","pushedAt":"2024-08-13T12:25:18.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Changes:\n  * analysis:\n* minor modifications on cycle analysis (only check for cylce of size 3 per default)\n* make delete more performant, by deleting multiple transformations/components at once if wanted.\n* adding graph cost and efficiency\n\n  * jnbs:\n*Adding text to Example JnB.\n\nnetwork -planners:\n* minor refactors\n* display fix, correct number of expected edges.","shortMessageHtmlLink":"Changes:"}},{"before":"66f4a3a1aec81965db4992661b3f5df8191a917e","after":null,"ref":"refs/heads/docs_fix","pushedAt":"2024-08-05T08:40:07.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"}},{"before":null,"after":"99fb79d24769b4b4acbfcc53313ca098efda193f","ref":"refs/heads/Useful_scoring_function_expansions","pushedAt":"2024-08-05T08:40:05.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"},"commit":{"message":"Create scoring_function_expansion\n\nthis is a bit a preview on the last chapter of the setup Trilogy, nevertheless, we can start doing this here.","shortMessageHtmlLink":"Create scoring_function_expansion"}},{"before":"99fb79d24769b4b4acbfcc53313ca098efda193f","after":null,"ref":"refs/heads/Useful_scoring_function_expansions","pushedAt":"2024-08-05T08:40:04.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"RiesBen","name":"Benjamin Ries","path":"/RiesBen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12428005?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEpup9SwA","startCursor":null,"endCursor":null}},"title":"Activity · OpenFreeEnergy/konnektor"}