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Quick runner/wrapper for scholars-discovery project

Instructions:

Import two git repositories into the base folder of this repository

  1. git clone https://github.com/vivo-community/scholars-discovery.git
  2. git clone https://github.com/vivo-project/sample-data.git

NOTE: everything assumes the scholars-discovery code is checked out into the scholars-discovery directory, and sample-data into a sample-data directory (which is the default anyway). They are in the .gitignore file.

This will run off the scholars-discovery master branch. Right now that might not have a grapqhl endpoint - for the time being it may be best to switch to the vstf-staging branch (e.g. git checkout ...). The idea for this project is you should be able to use it to run any branch in development mode.

import some data

  1. cd data-importer
  2. ./gradlew build (or gradlew.bat on Windows)
  3. ./gradlew run --args='openvivo --import'

That should (after 5-10 minutes) put data in the data-imported/openvivo directory. Then cd .. (back up to scholars-discovery-setup directory)

  1. cd ..
  2. docker-compose up

or (if already imported data into TDB)

  1. docker-compose up

This is making us of a file application-dev.yml to configure scholars-discovery for local development mode. It also defaults to importing data into the index at startup.

However, you can change middleware.index.onStartup=false after the first start up has finished and imported into the index succesfully - so that it doesn't rebuild the index every time.

# file: application-dev.yml

...
middleware:
  index:
    onStartup: true # change to false after first run
...

Sample Query

Once you have running, can go this http://localhost:9000/gui and run GraphQL queries. Sample queries can be found here:

Wiki (see sample Graphql queries)