pyproject.toml

[tool.poetry]
name = "pyMSAviz"
version = "0.4.2"
description = "MSA visualization python package for sequence analysis"
authors = ["moshi4"]
license = "MIT"
homepage = "https://moshi4.github.io/pyMSAviz/"
repository = "https://github.com/moshi4/pyMSAviz/"
readme = "README.md"
keywords = [
    "bioinformatics",
    "matplotlib",
    "visualization",
    "sequence-alignment",
    "sequence-analysis",
]
classifiers = [
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Framework :: Matplotlib",
]
include = ["tests"]

[tool.pytest.ini_options]
minversion = "6.0"
addopts = "--cov=src --tb=line --cov-report=xml --cov-report=term"
testpaths = ["tests"]

# Lint Rules: https://beta.ruff.rs/docs/rules
[tool.ruff]
select = ["E", "F", "W", "I", "D", "B"]
ignore = [
    "D100",
    "D101",
    "D104",
    "D105",
    "D205",
    "D400",
    "D401",
    "D403",
    "D415",
    "B905",
]
src = ["src", "tests"]
line-length = 88

[tool.ruff.pydocstyle]
convention = "numpy"

[tool.poetry.scripts]
pymsaviz = "pymsaviz.scripts.cli:main"

[tool.poetry.dependencies]
python = "^3.8"
biopython = ">=1.79"
matplotlib = ">=3.5.2"

[tool.poetry.group.dev.dependencies]
pytest = ">=7.1.2"
black = ">=22.10.0"
ruff = ">=0.0.264"
pytest-cov = ">=4.0.0"
ipykernel = ">=6.13.0"
mkdocs = ">=1.2"
mkdocstrings = { extras = ["python"], version = ">=0.19.0" }
mkdocs-jupyter = ">=0.21.0"
mkdocs-material = ">=8.2"

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"