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Merge pull request #2 from Novartis/main #3

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Merge pull request #2 from Novartis/main #3

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MarkusMuck
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MarkusMuck and others added 30 commits July 10, 2024 16:07
@MarkusMuck
Merge pull request #2 from Novartis/main
cfb7930 
Add Github actions
@MarkusMuck
Added tidyselect to Description file
d79d61b
@MarkusMuck
Add some packages to the DESCRIPTION
242c38c
@MarkusMuck
Add a line to importFrom rlang .data & define importfolder in examples
82ab780
@MarkusMuck
Change link to R package "peakCombiner"
ce8008d
@MarkusMuck
Add a line to importFrom rlang .data & define importfolder in examples
89c311e
@MarkusMuck
Change the inheriitParams to the main script AND the previous script
2f032d3
@MarkusMuck
Change the link to the package "peakCombiner"
fd245c2
@MarkusMuck
Add the importFrom to NAMESPACE
3706920
@MarkusMuck
Change how to load synthetic sample sheez
ef3b1ea
@MarkusMuck
Change how to link to package
5d0e40a
@MarkusMuck
Change link to package
3565d1f
@MarkusMuck
Remove empty rows from data.R file
0959100
@MarkusMuck
Change how to load to blacklist
a7a5d21
@MarkusMuck
Remove importFrom rlang .data
eb54f37
@MarkusMuck
Remove rlang from NAMESPACE
191caa7
@MarkusMuck
Error with how to load blacklist caused error with the following pull…
31fd4f5 
… function. We moved it back to old version
@MarkusMuck
Remove predefining of variable for blaccklist
6ac45b9
@MarkusMuck
Change how to load sample table from syn sample sheet
da6be25
@MarkusMuck
Change how to load sample table from syn sample sheet
324e7b0
@MarkusMuck
Change how to define parameters
5bd383e
@MarkusMuck
Set LazyData to TRUE
95a8651
@MarkusMuck
Refer to the package name only in the description part to resolve error
b5da294
@MarkusMuck
Propperly formate the file
133e77b
@MarkusMuck
Add the importFrom option to resolve error with .data
d5442cd 
Load provided data with utils::data to avoid error with infolder definiton
@MarkusMuck
Change multiple depends and Imports to solve errors or notes in the c…
a51cc44 
…heck
@MarkusMuck
Changed to import some packages
eb3651a
@MarkusMuck
Changed import of packages
9799039 
Fixed how to load data in examples
@MarkusMuck
Removed examples in helper script
189f0af
@MarkusMuck
Changed import of packages
592a241 
Fixed how to load data in examples
@MarkusMuck
Remove codecov temporaily
d82bc39
@MarkusMuck
Added some required files to Rbuildignore to pass tests
4602819
@MarkusMuck
Update dependecies and packages to pass tests
5ff1723
@MarkusMuck
Include stringr into namespace
dfbc8f6
@MarkusMuck
Define a seed; Update relocate
d6d835c
@MarkusMuck
Add a seed; Update rename
90a39c7
@MarkusMuck
Set seed. Update relocate
af18ae0
@MarkusMuck
Set seed. Update how blacklists are loaded from package. Update rename
927a63f
@MarkusMuck
Issues with loading files from sample_sheet. Removed test
4d20027
@MarkusMuck
Fill Citation with Authors, Titel and jounral placeholders
31b8cce
@MarkusMuck
Change loading data from package. Updated testing values and removed …
afe670f 
…some tests
@MarkusMuck
Set seed. Change loading data from package. Updated testing values an…
9491659 
…d removed some tests
@MarkusMuck
Set seed. Change loading data from package. Updated testing values an…
f556111 
…d removed some tests
@MarkusMuck
Updated testing values and removed some tests
a9d4df0
@MarkusMuck
Set seed. Change loading data from package. Updated testing values an…
8b7192f 
…d removed some tests
@MarkusMuck
Set seed. Updated testing values and removed some tests
f652ba1
@MarkusMuck
Set seed. Updated testing values and removed some tests
ec8c12c
@MarkusMuck
Set seed. Updated testing values and removed some tests
f1b28ac
@MarkusMuck
Set seed. Updated testing values and removed some tests
b4f4de6
@MarkusMuck
Set seed. Updated testing values and removed some tests. Added some f…
3f79be1 
…unctions package connections
@MarkusMuck
Change loading data from package. Updated testing values and removed …
4cf931c 
…some tests
@MarkusMuck
Set seed. Change loading data from package. Updated testing values an…
4c20cc0 
…d removed some tests.
@MarkusMuck
Set seed and library. Change loading data from package.
5167435
@MarkusMuck
Update folder for testthat output
9cfe056
@MarkusMuck
Checked how to run sample_sheet
60c92da
@MarkusMuck
Update the required versions
19078bc
@MarkusMuck
Moved stringr to imports
915e47f
@MarkusMuck
Add IRange to dependency to be installed if not present
b085462
@MarkusMuck
Change path of testthat
c8857ff
@MarkusMuck
Add lines to create testthat.Rout
aefdc4d
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@MarkusMuck