diff --git a/src/visualization/metabolicCartography/unifyMetabolicMapCD.m b/src/visualization/metabolicCartography/unifyMetabolicMapCD.m index 3d4956ce6e..32fb6000ed 100644 --- a/src/visualization/metabolicCartography/unifyMetabolicMapCD.m +++ b/src/visualization/metabolicCartography/unifyMetabolicMapCD.m @@ -13,15 +13,15 @@ % map2: Map with grey reactions colour, width 1 and white nodes colour. % % .. Authors: - J.Modamio LCSB, Belval, Luxembourg. 19.08.2017 - + map2 = map; - - for i = 1:length(map2.rxnName) - map2.rxnColor{i,1} = 'FFDCDCDC'; - map2.rxnWidth{i,1} = 1; + + for i = 1:length(map2.rxnName) + map2.rxnColor{i, 1} = 'FFDCDCDC'; + map2.rxnWidth{i, 1} = 1; end for j = 1:length(map2.molColor) - map2.molColor{j,1} = 'FFFFFFFF'; + map2.molColor{j, 1} = 'FFFFFFFF'; end - -end \ No newline at end of file + +end diff --git a/src/visualization/metabolicCartography/unifyMetabolicPPImapCD.m b/src/visualization/metabolicCartography/unifyMetabolicPPImapCD.m index 21a680d6a7..7def219fe6 100644 --- a/src/visualization/metabolicCartography/unifyMetabolicPPImapCD.m +++ b/src/visualization/metabolicCartography/unifyMetabolicPPImapCD.m @@ -11,7 +11,7 @@ % % OUTPUT: % map2: Map with grey reactions colour, width 1 and white nodes colour. -% Change colour complex to white +% Change colour complex to white % % .. Authors: % - J.Modamio LCSB, Belval, Luxembourg. 19.08.2017 LCSB. Belval. Luxembourg @@ -20,49 +20,49 @@ map2 = map; % Change reaction colour to ligth grey and and width to 1.0 - for i = 1:length(map2.rxnName) - map2.rxnColor{i,1} = 'FFDCDCDC'; - map2.rxnWidth{i,1} = 1; + for i = 1:length(map2.rxnName) + map2.rxnColor{i, 1} = 'FFDCDCDC'; + map2.rxnWidth{i, 1} = 1; end - % Change molecules color to white + % Change molecules color to white for j = 1:length(map2.molColor) - map2.molColor{j,1} = 'FFFFFFFF'; - end - % Change complex colour to white + map2.molColor{j, 1} = 'FFFFFFFF'; + end + % Change complex colour to white for c = 1:length(map2.complexColor) - map2.complexColor{c,1} = 'FFFFFFFF'; - end + map2.complexColor{c, 1} = 'FFFFFFFF'; + end % Change reactions secondary links to light grey (products) % and width to 1 - index=find(~cellfun(@isempty, map2.rxnProductLineColor)); - for t = 1:length(index) - if length(map2.rxnProductLineColor{t,1}) > 1 - for d = 1:length(map2.rxnProductLineColor{t,1}) - map2.rxnProductLineColor{t,1}{d,1} = 'FFDCDCDC'; - map2.rxnProductLineWidth{t,1}{d,1} = 1; - end - elseif length(map2.rxnProductLineColor{t,1}) == 1 - map2.rxnProductLineColor{t,1}{1,1} = 'FFDCDCDC'; - map2.rxnProductLineWidth{t,1}{1,1} = 1; - end - end + index = find(~cellfun(@isempty, map2.rxnProductLineColor)); + for t = 1:length(index) + if length(map2.rxnProductLineColor{t, 1}) > 1 + for d = 1:length(map2.rxnProductLineColor{t, 1}) + map2.rxnProductLineColor{t, 1}{d, 1} = 'FFDCDCDC'; + map2.rxnProductLineWidth{t, 1}{d, 1} = 1; + end + elseif length(map2.rxnProductLineColor{t, 1}) == 1 + map2.rxnProductLineColor{t, 1}{1, 1} = 'FFDCDCDC'; + map2.rxnProductLineWidth{t, 1}{1, 1} = 1; + end + end clear id index - + % Change reactions secondary links to light grey (reactants) % and width to 1 - index=find(~cellfun(@isempty, map2.rxnReactantLineColor)); - for r = 1:length(index) - if length(map2.rxnReactantLineColor{r,1}) > 1 - for p = 1:length(map2.rxnReactantLineColor{r,1}) - map2.rxnReactantLineColor{r,1}{p,1} = 'FFDCDCDC'; - map2.rxnReactantLineWidth{r,1}{p,1} = 1; + index = find(~cellfun(@isempty, map2.rxnReactantLineColor)); + for r = 1:length(index) + if length(map2.rxnReactantLineColor{r, 1}) > 1 + for p = 1:length(map2.rxnReactantLineColor{r, 1}) + map2.rxnReactantLineColor{r, 1}{p, 1} = 'FFDCDCDC'; + map2.rxnReactantLineWidth{r, 1}{p, 1} = 1; end - elseif length(map2.rxnReactantLineColor{r,1}) == 1 - map2.rxnReactantLineColor{r,1}{1,1} = 'FFDCDCDC'; - map2.rxnReactantLineWidth{r,1}{1,1} = 1; + elseif length(map2.rxnReactantLineColor{r, 1}) == 1 + map2.rxnReactantLineColor{r, 1}{1, 1} = 'FFDCDCDC'; + map2.rxnReactantLineWidth{r, 1}{1, 1} = 1; end end clear id index - -end \ No newline at end of file + +end