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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["hatchling", "hatch-vcs"]
build-backend = "hatchling.build"
[project]
name = "nwbinspector"
version = "0.6.0"
description = "Tool to inspect NWB files for best practices compliance."
readme = "README.md"
authors = [
{name = "Cody Baker"},
{name = "Steph Prince"},
{name = "Szonja Weigl"},
{name = "Heberto Mayorquin"},
{name = "Paul Adkisson"},
{name = "Luiz Tauffer"},
{name = "Ben Dichter", email = "[email protected]"}
]
urls = { "Homepage" = "https://github.com/NeurodataWithoutBorders/nwbinspector" }
license = {file = "license.txt"}
keywords = ["nwb"]
classifiers = [
"Intended Audience :: Science/Research",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Operating System :: POSIX :: Linux",
"Operating System :: Microsoft :: Windows",
"Operating System :: MacOS",
"License :: OSI Approved :: BSD License",
]
requires-python = ">=3.9"
dependencies = [
"pynwb>=2.8", # NWB Inspector should always be used with most recent minor versions of PyNWB
"hdmf-zarr",
"fsspec",
"s3fs",
"requests",
"aiohttp",
"PyYAML",
"jsonschema",
"packaging",
"natsort",
"click",
"tqdm",
"isodate",
"numpy>=1.22.0,<2.0.0", # TODO: add compatibility for 2.0 - HDMF Zarr and others also still have some troubles
"h5py<3.12.0", # TODO: remove pin when https://github.com/h5py/h5py/issues/2505 is fixed and released
]
[project.optional-dependencies]
dandi = [
"dandi",
"remfile",
]
[tool.setuptools.packages.find]
where = ["src"]
[project.scripts]
nwbinspector = "nwbinspector._nwbinspector_cli:_nwbinspector_cli"
[tool.black]
line-length = 120
target-version = ['py37']
include = '\.pyi?$'
extend-exclude = '''
/(
\.toml
|\.rst
|\.md
|\.yml
|\.txt
|\.sh
|\.git
|\.ini
|\.hg
|\.mypy_cache
|\.tox
|\.venv
|build
|dist
)/
'''
[tool.ruff]
exclude = ["docs/*"]
[tool.ruff.lint]
# TODO: eventually, expand to other 'D', and other 'F' linting
select = [
"F401",
"F541",
"I",
"ANN001",
"ANN201",
"ANN202",
"ANN205",
"ANN206",
]
fixable = ["ALL"]
[tool.ruff.lint.per-file-ignores]
"src/nwbinspector/__init__.py" = ["I"] # Must maintain explicit order for imports for check registration
"src/nwbinspector/utils/__init__.py" = ["F401", "I"] # Several items planned for long-term deprecation
# Temporarily keeping all exposure below for back-compatibility
# Deprecation scheduled for 9/15/2024
"src/nwbinspector/nwbinspector/__init__.py" = ["F401", "I"]
"src/nwbinspector/inspector_tools/__init__.py" = ["F401", "I"]
"src/nwbinspector/version/__init__.py" = ["F401", "I"]
"src/nwbinspector/register_checks/__init__.py" = ["F401", "I"]
"tests/*" = ["ANN"]
[tool.ruff.lint.isort]
relative-imports-order = "closest-to-furthest"
known-first-party = ["nwbinspector"]
[tool.codespell]
skip = '.git*,*.pdf,*.css'
check-hidden = true
ignore-words-list = 'assertin'