diff --git a/core/nwb.file.yaml b/core/nwb.file.yaml index 3c141b49..2376f36d 100644 --- a/core/nwb.file.yaml +++ b/core/nwb.file.yaml @@ -7,7 +7,7 @@ groups: attributes: - name: nwb_version dtype: text - value: 2.2.4 + value: 2.2.5 doc: File version string. Use semantic versioning, e.g. 1.2.1. This will be the name of the format with trailing major, minor and patch numbers. datasets: diff --git a/core/nwb.namespace.yaml b/core/nwb.namespace.yaml index 3a992098..c3ec78ad 100644 --- a/core/nwb.namespace.yaml +++ b/core/nwb.namespace.yaml @@ -57,4 +57,4 @@ namespaces: - doc: This source module contains neurodata_type for retinotopy data. source: nwb.retinotopy.yaml title: Retinotopy - version: 2.2.4 + version: 2.2.5 diff --git a/core/nwb.ophys.yaml b/core/nwb.ophys.yaml index 9314d351..386dca9b 100644 --- a/core/nwb.ophys.yaml +++ b/core/nwb.ophys.yaml @@ -17,8 +17,8 @@ groups: - name: field_of_view dtype: float32 dims: - - width|height - - width|height|depth + - - width|height + - - width|height|depth shape: - - 2 - - 3 @@ -232,11 +232,11 @@ groups: - name: origin_coords dtype: float32 dims: - - x, y - - x, y, z + - - x, y + - - x, y, z shape: - - 2 - - 3 + - - 2 + - - 3 doc: Physical location of the first element of the imaging plane (0, 0) for 2-D data or (0, 0, 0) for 3-D data. See also reference_frame for what the physical location is relative to (e.g., bregma). quantity: '?' @@ -248,11 +248,11 @@ groups: - name: grid_spacing dtype: float32 dims: - - x, y - - x, y, z + - - x, y + - - x, y, z shape: - - 2 - - 3 + - - 2 + - - 3 doc: Space between pixels in (x, y) or voxels in (x, y, z) directions, in the specified unit. Assumes imaging plane is a regular grid. See also reference_frame to interpret the grid. quantity: '?' diff --git a/docs/format/source/conf.py b/docs/format/source/conf.py index ccac52f8..30d39668 100644 --- a/docs/format/source/conf.py +++ b/docs/format/source/conf.py @@ -36,7 +36,7 @@ def run_doc_autogen(_): def setup(app): app.connect('builder-inited', run_doc_autogen) - app.add_stylesheet("theme_overrides.css") # overrides for wide tables in RTD theme + app.add_css_file("theme_overrides.css") # overrides for wide tables in RTD theme # -- ext settings ----------------------------------------------------- @@ -83,7 +83,7 @@ def setup(app): # built documents. # # The short X.Y version. -version = 'v2.2.4' +version = 'v2.2.5' # The full version, including alpha/beta/rc tags. release = version diff --git a/docs/format/source/format_release_notes.rst b/docs/format/source/format_release_notes.rst index dca23425..8d54affc 100644 --- a/docs/format/source/format_release_notes.rst +++ b/docs/format/source/format_release_notes.rst @@ -1,30 +1,36 @@ Release Notes ============= +2.2.5 (May 29, 2020) +---------------------- + +- Add schema validation CI. +- Fix incorrect dims and shape for ``ImagingPlane.origin_coords`` and ``ImagingPlane.grid_spacing``, and fix incorrect dims for ``TwoPhotonSeries.field_of_view``. + 2.2.4 (April 14, 2020) ---------------------- -- Fix typo in nwb.ophys.yaml that prevents proper parsing of the schema. +- Fix typo in ``nwb.ophys.yaml`` that prevents proper parsing of the schema. 2.2.3 (April 13, 2020) ---------------------- - Move nested type definitions to root of YAML files. This does not functionally change the schema but simplifies parsing of the schema and extensions by APIs. -- Make `ImagingPlane.imaging_rate` optional to handle cases where an imaging plane is associated with multiple time series with different rates. +- Make ``ImagingPlane.imaging_rate`` optional to handle cases where an imaging plane is associated with multiple time series with different rates. - Add release process documentation. 2.2.2 (March 2, 2020) --------------------- -- Fix shape and dims of `OpticalSeries.data` for color images -- Allow more than one `OpticalChannel` object in `ImagingPlane` -- Update hdmf-common-schema to 1.1.3. This fixes missing 'shape' and 'dims' key for types `VectorData`, `VectorIndex`, and `DynamicTableRegion`. -- Revert changes to retinotopy.yaml in 2.1.0 which break backward compatibility and were not supported by the APIs in any case. Changes will be revisited in a future version. +- Fix shape and dims of ``OpticalSeries.data`` for color images +- Allow more than one ``OpticalChannel`` object in ``ImagingPlane`` +- Update hdmf-common-schema to 1.1.3. This fixes missing 'shape' and 'dims' key for types ``VectorData``, ``VectorIndex``, and ``DynamicTableRegion``. +- Revert changes to ``nwb.retinotopy.yaml`` in 2.1.0 which break backward compatibility and were not supported by the APIs in any case. Changes will be revisited in a future version. 2.2.1 (January 14, 2020) ------------------------ -- Fixed incorrect version numbers in nwb.file.yaml and hdmf-common namespace.yaml. +- Fixed incorrect version numbers in ``nwb.file.yaml`` and ``hdmf-common-schema/common/namespace.yaml``. 2.2.0 (January 6, 2020) -----------------------