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One of our OpenScope project packaged in 2022 is about to be published. We packaged the data in NWB files on Dandi but our collaborators found some issues loading the files in MatNWB, while it worked on our end with PyNWB.
We discussed this issue over email with Vijay and he suggested that we create an issue on this repo for documentation purposes
Steps to Reproduce
Thefiles are currently embargoed(we can share them with the team privately if needed), but trying to open them using matnwb returns an error.
Error Message
Errorusing types.util.checkUnset (line 13)Unexpectedproperties {data_offset}.Yourschema version may be incompatible with the file.Considerchecking the schema version of the file with
`util.getSchemaVersion(filename)` andcomparingwiththeYAMLnamespaceversion present in nwb-schema/core/nwb.namespace.yamlErrorin types.core.IndexSeries (line 35)types.util.checkUnset(obj,
unique(varargin(1:2:end)));
Errorin io.parseGroup (line 85)
parsed = eval([Type.typename'(kwargs{:})']);
Errorin io.parseGroup (line 38)
subg =io.parseGroup(filename, group, Blacklist);
Errorin io.parseGroup (line 38)
subg =io.parseGroup(filename, group, Blacklist);
Errorin io.parseGroup (line 38)
subg =io.parseGroup(filename, group, Blacklist);
Errorin nwbRead (line 59)
nwb =io.parseGroup(filename, h5info(filename), Blacklist);
2.6.0 should have a data_offset property for IndexSeries and I can confirm that it exists. It is possible that this is just a MATLAB Path resolution problem. Can you call which types.core.IndexSeries and confirm for me that the generated files are where you expect them to be? Usually what happens is that MATLAB prefers resolving path names from PATH before checking the working directory.
What happened?
One of our OpenScope project packaged in 2022 is about to be published. We packaged the data in NWB files on Dandi but our collaborators found some issues loading the files in MatNWB, while it worked on our end with PyNWB.
We discussed this issue over email with Vijay and he suggested that we create an issue on this repo for documentation purposes
Steps to Reproduce
Error Message
Operating System
Windows
Matlab Version
2.4.0
Code of Conduct
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