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tach.toml
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tach.toml
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exclude = [
".*__pycache__",
".*egg-info",
"docs",
"tests",
"venv",
"LICENSE",
"build",
]
source_roots = [
'sub-packages/bionemo-core/src',
'sub-packages/bionemo-esm2/src',
'sub-packages/bionemo-example_model/src',
'sub-packages/bionemo-fw/src',
'sub-packages/bionemo-geneformer/src',
'sub-packages/bionemo-geometric/src',
'sub-packages/bionemo-llm/src',
'sub-packages/bionemo-scdl/src',
'sub-packages/bionemo-size-aware-batching/src',
'sub-packages/bionemo-testing/src',
'sub-packages/bionemo-webdatamodule/src',
]
[[modules]]
path = "bionemo.core"
depends_on = []
[[modules]]
path = "bionemo.esm2"
depends_on = [
{ path = "bionemo.core" },
{ path = "bionemo.llm" },
]
[[modules]]
path = "bionemo.example_model"
depends_on = [
{ path = "bionemo.core" },
{ path = "bionemo.llm" },
]
[[modules]]
path = "bionemo.fw"
depends_on = [
{ path = "bionemo.core" },
{ path = "bionemo.esm2" },
{ path = "bionemo.geneformer" },
{ path = "bionemo.geometric" },
{ path = "bionemo.llm" },
{ path = "bionemo.noodles" },
{ path = "bionemo.scdl" },
{ path = "bionemo.size_aware_batching" },
{ path = "bionemo.webdatamodule" },
{ path = "bionemo.noodles" },
]
[[modules]]
path = "bionemo.geneformer"
depends_on = [
{ path = "bionemo.core" },
{ path = "bionemo.llm" },
{ path = "bionemo.scdl" },
]
[[modules]]
path = "bionemo.geometric"
depends_on = [
{ path = "bionemo.core" },
]
[[modules]]
path = "bionemo.llm"
depends_on = [
{ path = "bionemo.core" },
]
[[modules]]
path = "bionemo.noodles"
depends_on = [
{ path = "bionemo.core" },
]
[[modules]]
path = "bionemo.scdl"
depends_on = [
{ path = "bionemo.core" },
]
[[modules]]
path = "bionemo.size_aware_batching"
depends_on = [
{ path = "bionemo.core" },
]
[[modules]]
path = "bionemo.testing"
depends_on = [
{ path = "bionemo.core" },
{ path = "bionemo.llm" },
]
[[modules]]
path = "bionemo.webdatamodule"
depends_on = [
{ path = "bionemo.core" },
{ path = "bionemo.llm" },
]