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I'm using DiCER, testing on a single subject that was preprocessed using fMRIPrep v20.2.6 (the latest version as of Nov 2021)
Because I'm using fMRIprep version > 1.1.1, I used DiCER_lightweight.sh instead of carpetCleaner.sh
Other dependencies I'm using are:
Python 3.9.7 (miniconda) with all required packages (scikit-learn, etc)
FSL v6.0.3
AFNI 21.2.04
My call to DiCER_lightweight.sh was as follows (with variables as shown), using a T1w in same space as the functional images (MNI152NLin2009cAsym, with both functional and anatomical images in 2x2x2 mm format).
sh DiCER_lightweight.sh -i $func -a $T1w -w $pathToFiles -s ${subjid} -d
FAST and detrending/high pass filtering appeared to work fine.
The first error was:
ImportError: cannot import name 'izip' from 'itertools' (unknown location)
but this is due to using Python 3+. I don't think this is affecting the overall execution.
Additional errors are described in my attached my DiCER output.
I'm using DiCER, testing on a single subject that was preprocessed using fMRIPrep v20.2.6 (the latest version as of Nov 2021)
Because I'm using fMRIprep version > 1.1.1, I used DiCER_lightweight.sh instead of carpetCleaner.sh
Other dependencies I'm using are:
Python 3.9.7 (miniconda) with all required packages (scikit-learn, etc)
FSL v6.0.3
AFNI 21.2.04
My call to DiCER_lightweight.sh was as follows (with variables as shown), using a T1w in same space as the functional images (MNI152NLin2009cAsym, with both functional and anatomical images in 2x2x2 mm format).
variables
subjid='001'
basefolder='/home/Chyatt/onrc/data/fmriprep/domino3/derivatives/fmriprep/'
pathToFiles=${basefolder}'sub-'${subjid}'/ses-01'
func='func/sub-'${subjid}'_ses-01_task-domino3_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.nii.gz'
T1w='anat/sub-'${subjid}'_ses-01_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.nii.gz'
call to DiCER
sh DiCER_lightweight.sh -i $func -a $T1w -w$pathToFiles -s $ {subjid} -d
FAST and detrending/high pass filtering appeared to work fine.
The first error was:
ImportError: cannot import name 'izip' from 'itertools' (unknown location)
but this is due to using Python 3+. I don't think this is affecting the overall execution.
Additional errors are described in my attached my DiCER output.
Any suggestions would be helpful. Thank you!
dicer_errors (1).txt
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