Breaking and fixing some more things.

Author: ryanmaguire

docs/requirements.txt

@@ -3,5 +3,4 @@ scipy
 spiceypy
 matplotlib
 mayavi
-pandas
-PyMieScatt
+PyMieScatt

docs/user_guide/figs/GRESH_E5_COMPARE.png

@@ -0,0 +1,89 @@
+%----------------------------Acronyms---------------------------%
+\newglossaryentry{spice}{
+    type=\acronymtype,
+    name={SPICE},
+    text={SPICE\glsadd{spiceglos}},
+    description={
+        Spacecraft, Planet, Instrument, C-Matrix, Events
+    }
+}
+\newglossaryentry{dlp}{
+    type=\acronymtype,
+    name={DLP},
+    text={DLP\glsadd{dlpglos}},
+    description={Diffraction-Limited Profile},
+    first={diffraction-limited profile (DLP)\glsadd{dlpglos}}
+}
+\newglossaryentry{dsn}{
+    type=\acronymtype, 
+    name={DSN},
+    text={DSN\glsadd{dsnglos}},
+    description={Deep Space Network},
+    first={Deep Space Network (DSN)\glsadd{dsnglos}}
+}
+\newglossaryentry{nasa}{
+    type=\acronymtype, 
+    name={NASA},
+    text={NASA\glsadd{nasaglos}},
+    description={National Aeronautics and Space Administration},
+    first={NASA\glsadd{nasaglos}}
+}
+\newglossaryentry{uso}{
+    type=\acronymtype,
+    name={USO},
+    text={USO\glsadd{usoglos}},
+    description={Ultra-Stable Oscillator},
+    first={Ultra-Stable Oscillator (USO)\glsadd{usoglos}}
+}
+\newglossaryentry{hga}{
+    type=\acronymtype,
+    name={HGA},
+    text={HGA\glsadd{hgaglos}},
+    description={High Gain Antenna},
+    first={High Gain Antenna (HGA)\glsadd{hgaglos}}
+}
+\newglossaryentry{if}{
+    type=\acronymtype,
+    name={IF},
+    text={IF\glsadd{ifglos}},
+    description={Intermediate Frequency},
+    first={Intermediate Frequency (IF)\glsadd{ifglos}}
+}
+\newglossaryentry{pds}{
+    type=\acronymtype,
+    name={PDS},
+    text={PDS\glsadd{pdsglos}},
+    description={Planetary Data System},
+    first={Planetary Data System (PDS)\glsadd{pdsglos}}
+}
+\newglossaryentry{rsr}{
+    type=\acronymtype,
+    name={RSR},
+    text={RSR\glsadd{rsrglos}},
+    description={Radio Science Receiver},
+    first={Radio Science Receiver (RSR)\glsadd{rsrglos}}
+}
+\newglossaryentry{rss}{
+    type=\acronymtype,
+    name={RSS},
+    text={RSS\glsadd{rssglos}},
+    description={Radio Science Subsystem},
+    first={Radio Science Subsystem (RSS)\glsadd{rssglos}}
+}
+\newglossaryentry{naif}{
+    type=\acronymtype,
+    name={NAIF},
+    text={NAIF\glsadd{naifglos}},
+    description={Navigation Ancillary Information Facility},
+    first={
+        Navigation Ancillary Information Facility
+        (NAIF)\glsadd{naifglos}
+    }
+}
+\newglossaryentry{spm}{
+    type=\acronymtype,
+    name={SPM},
+    text={SPM\glsadd{spmglos}},
+    description={Seconds Past Midnight},
+    first={seconds past midnight (SPM)\glsadd{spmglos}}
+}

docs/user_guide/figs/MTR86_TAUTHRESH_DR.pdf

@@ -0,0 +1,198 @@
+@article{Acton1996,
+    author={C. Acton},
+    title="{Ancillary Data Services of NASA's Navigation and
+            Ancillary Information Facility}",
+    journal="Planetary and Space Science",
+    volume="44",
+    pages="65--70",
+    year="1996"
+}
+@article{French1993,
+    author={
+        R. French and P. Nicholson and M. Cooke and J. Elliot and
+        K. Matthews and O. Perkovic and E. Tollestrup and
+        P. Harvey and N. Chanover and M. Clark and
+        E. Dunham and W. Forrest and J. Harrington and
+        J. Pipher and A. Brahic and
+        I. Grenier and F. Roques and M. Arndt
+    },
+    title="{Geometry of the Saturn system from the 3 July 1989
+            occultation of 28 Sgr and Voyager observations}",
+    journal="Icarus",
+    volume="103",
+    pages="163--214",
+    year="1993"
+}
+@article{Marouf1983,
+    author={E. Marouf and L. Tyler and H Zebker and R. Simpson and V Eshleman},
+    title="{Particle Size Distributions in Saturn's Rings from Voyager 1 Radio Occultation}",
+    journal="Icarus",
+    volume="54",
+    pages="189--211",
+    year="1983"
+}
+@article{Marouf1986,
+    author={E. Marouf and L. Tyler and P. Rosen},
+    title="{Profiling Saturn's rings by radio occultation}",
+    journal="Icarus",
+    volume="68",
+    pages="120--166",
+    year="1986"
+}
+@article{Marouf2011,
+    author={
+        E. Marouf and R. French and N. Rappaport and K. Wong and
+        C. McGhee-French and A. Anabtawi
+    },
+    title="{Uncovering of small-scale quasi-periodic structure
+            in Saturn's ring C and possible origin}",
+    journal="EPSC-DPS Joint Meeting",
+    volume="265",
+    year="2011"
+}
+@article{Colwell2009,
+    author={
+        J.E. Colwell and P.D. Nicholson and M.S. Tiscareno
+        and C.D. Murray and R.G. French and E.A. Marouf
+    },
+    title="{The Structure of Saturn's Rings}",
+    journal="Saturn from Cassini-Huygens",
+    pages="375",
+    year="2009"
+}
+@article{ElMoutamid2016,
+    author={
+        M. El Moutamid and P.D. Nicholson and R.G French and
+        M.S. Tiscareno and C.D. Murray and M.W. Evans and
+        C.M. French and M.M. Hedman and J.A. Burns
+    },
+    title="{How Janus' orbital swap affects the edge of
+            Saturn's A ring?}",
+    journal="Icarus",
+    volume="279",
+    pages="125-140",
+    year="2016"
+}
+@article{French2016a,
+    author={
+        R.G French and P.D Nicholson and M.M Hedman and
+        J.M. Hahn and C.A. McGhee-French and J.E. Colwell
+        and E.A. Marouf and N.J. Rappaport
+    },
+    title="{Deciphering the embedded wave in
+            Saturn's Maxwell ringlet}",
+    journal="Icarus",
+    volume="279",
+    pages="62-77",
+    year="2016a"
+}
+@article{French2016b,
+    author={
+        R.G French and P.D. Nicholson and C.A. McGhee-French and
+        K. Lonergan and T. Sepersky and M.M. Hedman and
+        E.A. Marouf and J.E. Colwell
+    },
+    title="{Noncircular features in Saturn's rings III:
+            The Cassini Division}",
+    journal="Icarus",
+    volume="274",
+    pages="131-162",
+    year="2016b"
+}
+@article{Kliore2004,
+    author={
+        A.J Kliore and J.D. Anderson and J.W. Armstrong and
+        S.W. Asmar and C.L. Hamilton and N.J. Rappaport and
+        H.D. Wahlquist and R. Ambrosini and F.M. Flasar and
+        R.G. French and L. Iess and E.A. Marouf and A.F. Nagy
+    },
+    title="{Cassini Radio Science}",
+    journal="Space Science Reviews",
+    volume="115",
+    pages="1-70",
+    year="2004"
+}
+@article{French2017,
+    author={
+        R.G. French and C.A. McGhee-French and K. Lonergan and T. Sepersky and
+        R.A. Jacobson and P.D. Nicholson and M.M. Hedman and E.A. Marouf and
+        J.E. Colwell
+    },
+    title="{Noncircular features in Saturn's rings IV:
+            Absolute radius scale and Saturn's pole direction}",
+    journal="Icarus",
+    volume="290",
+    pages="14-45",
+    year="2017"
+}
+@article{Nicholson2014a,
+    author={
+        P.D. Nicholson and R.G French and
+        M.M. Hedman E.A. Marouf J.E. Colwell
+    },
+    title="{Noncircular features in Saturn's rings I:
+            The edge of the B ring}",
+    journal="Icarus",
+    volume="227",
+    pages="152-175",
+    year="2014a"
+}
+@article{Nicholson2014b,
+    author={
+        P.D. Nicholson and R.G French and C.A. McGhee-French and
+        M.M. Hedman and E.A. Marouf and J.E. Colwell and
+        K. Lonergan and T. Sepersky
+    },
+    title="{Noncircular features in Saturn's rings II:
+           The C ring}",
+    journal="Icarus",
+    volume="241",
+    pages="373-396",
+    year="2014b"
+}
+@article{Rappaport2009,
+    author={
+        N.J. Rappaport and P.Y. Longaretti and R.G. French and
+        E.A. Marouf and C.A. McGhee
+    },
+    title="{A procedure to analyze nonlinear density waves in
+            Saturn's rings using several occultation profiles}",
+    journal="Icarus",
+    volume="199",
+    year="2009"
+}
+@article{Thomson2007,
+    author={
+        F.S. Thomson and E.A. Marouf and G.L. Tyler and
+        R.G. French and N.J. Rappoport
+    },
+    title="{Periodic microstructure in Saturn's rings A and B}",
+    journal="Geophysical Research Letters",
+    volume="34",
+    pages="L23203",
+    year="2007"
+}
+
+@manual{CRSUG2018,
+    author={S. W. Asmar and R. G. French and E. A. Marouf and P. Schinder and J. W. Armstrong and P. Tortora and L. Iess and A. Anabtawi and A. J. Kliore and M. Parisi and M. Zannoni and and D. Kahan},
+    title="Cassini Radio Science User's Guide",
+    edition="v1.1",
+    month="September",
+    year="2018",
+    organization="NASA Jet Propulsion Laboratory"
+    }
+@ARTICLE{Gresh1989,
+       author = {{Gresh}, D.~L. and {Marouf}, E.~A. and {Tyler}, G.~L. and
+         {Rosen}, P.~A. and {Simpson}, R.~A.},
+        title = "{Voyager radio occultation by Uranus' rings  I. Observational results}",
+      journal = {Icarus},
+     keywords = {Radio Occultation, Uranus Rings, Voyager 2 Spacecraft, Ellipticity, Kepler Laws, Opacity, Scattering, Signal Measurement, Spacecraft Antennas, URANUS, RINGS, OCCULTATIONS, RADIO METHODS, VOYAGER 2 MISSION, DEPTH, SPACECRAFT OBSERVATIONS, MICROWAVES, WAVELENGTHS, OPTICAL PROPERTIES, OPACITY, STRUCTURE, MORPHOLOGY, GEOMETRY, EXPERIMENTS, EQUIPMENT, DIAGRAMS, PARAMETERS, ANALYSIS, DIFFRACTION, CALCULATIONS, COMPARISONS, CHARACTERISTICS, PARTICLES, Lunar and Planetary Exploration; Uranus},
+         year = "1989",
+        month = "Mar",
+       volume = {78},
+       number = {1},
+        pages = {131-168},
+          doi = {10.1016/0019-1035(89)90074-2},
+       adsurl = {https://ui.adsabs.harvard.edu/abs/1989Icar...78..131G},
+      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+    }

docs/user_guide/figs/REV007E_X43_FORFIT_EXAMP.PDF

@@ -0,0 +1,92 @@
+\newglossaryentry{diffraction reconstruction}{%
+    name={Diffraction Reconstruction},
+    text={diffraction reconstruction},
+    description={Retrieval of radial optical depth
+                 profile of Saturn's rings responsible for
+                 observed diffraction pattern}}
+\newglossaryentry{optical depth}{%
+    name={Optical Depth},text={optical depth},
+    description={A term in physics}}
+\newglossaryentry{sampling rate}{%
+    name={Sampling Rate},
+    text={sampling rate},
+    description={The number of samples that are taken
+                 from a given signal per unit time}}
+\newglossaryentry{allen deviation}{
+        name = {Allen Deviation},
+        text = {Allen deviation},
+        description = {A physics term}}
+\newglossaryentry{ingress}{%
+        name = {Ingress},
+        text = {ingress},
+        description = {Entry phase of a ring or atmosphere occultation}}
+\newglossaryentry{egress}{%
+        name = {Egress},
+        text = {egress},
+        description = {Exit phase of a ring or atmosphere occultation}}
+\newglossaryentry{nasaglos}{%
+        name = {NASA},
+        text = {NASA},
+        description = {National Aeronautics and Space Administration}}
+\newglossaryentry{dsnglos}{%
+        name = {Deep Space Network},
+        text = {Deep Space Network},
+        description = {NASA's complex of Earth-based antennas,
+                       used to communicate with spacecraft}}
+\newglossaryentry{hgaglos}{%
+        name={High Gain Antenna},
+        text={High Gain Antenna},
+        description={Highly directional main spacecraft antenna
+                     for communications and radio science}}
+\newglossaryentry{pdsglos}{%
+        name={Planetary Data System},
+        text={Planetary Data System},
+        description={Long-term archive of digital data products
+                     returned from NASA's planetary missions, and from
+                     other kinds of flight and ground-based data acquisitions}}
+\newglossaryentry{rsrglos}{%
+        name={Radio Science Receiver},
+        text={Radio Science Receiver},
+        description={An open-loop receiver used in NASA's Deep
+                     Space Network (DSN) facilities}}
+\newglossaryentry{rssglos}{%
+        name={Radio Science Subsystem},
+        text={Radio Science Subsystem},
+        description={A subsystem placed on board a spacecraft
+                     for radio science purposes}}
+\newglossaryentry{diametric occultation}{%
+    name={Diametric occultation},
+    text={diametric occultation},
+    description={An occultation geometry in which the path
+                 of the complete occultation extends from ring ansa
+                 to ring ansa, passing behind the planet at mid-occultation}}
+\newglossaryentry{atmospheric occultation}{%
+    name={Atmospheric occultation},
+    text={atmospheric occultation},
+    description={Disappearance or reappearance of a source after
+                 the signal has passed through the atmosphere of a
+                 planet or satellite}}
+\newglossaryentry{chord occultation}{%
+    name={Chord occultation},
+    text={chord occultation},
+    description={Ring occultation}}
+\newglossaryentry{fresnel inversion}{%
+    name={Fresnel inversion},
+    text={Fresnel inversion},
+    description={Retrieval of intrinsic optical depth profile of
+                 the rings by using a Fresnel transform to correct
+                 for the effects of diffraction in the observed signal}}
+\newglossaryentry{rev number}{%
+    name={Rev number},
+    text={rev number},
+    description={The number of times the Cassini spacecraft has orbited Saturn}}
+\newglossaryentry{dlpglos}{
+    name={Diffraction-limited profile},
+    text={Diffraction-limited profile},
+    description={Observed radial optical depth profile without correcting for the effects of diffraction}
+}
+\newglossaryentry{spmglos}{
+    name={SPM},
+    text={SPM},
+    description={seconds past midnight}
+}