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Stand alone cvPCA function? #3

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darioringach opened this issue Aug 30, 2019 · 5 comments
Open

Stand alone cvPCA function? #3

darioringach opened this issue Aug 30, 2019 · 5 comments

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@darioringach
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I assume somewhere in the code there is stand-alone cvPCA function... can you help me find it?
Thanks!

Dario
carsen-stringer added a commit that referenced this issue Sep 3, 2019
@carsen-stringer
added python notebook + cvPCA in python (issue #3)
be8bc96
@carsen-stringer
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shuffledSpectrum.m is the stand-alone function.

I've also added a python folder with it implemented in utils.py as "cvPCA". "shuff_cvPCA" runs multiple shuffles of the first and second repeat (trading stimuli back and forth). See the notebook powerlaws.ipynb for run info + pre-processing.

@darioringach
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Got it... thanks!

@darioringach
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What is the format of respB0?
Some functions seem to be missing (svdcon.m and fullCOV.m)?

@darioringach
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Just following up on the location of the above functions...

@carsen-stringer
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Svdecon is here https://github.com/MouseLand/stringer-pachitariu-et-al-2018a/blob/master/utilities/svdecon.m

Fullcov is a matrix not a function

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@darioringach @carsen-stringer