{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":155213323,"defaultBranch":"main","name":"seqreports","ownerLogin":"Molmed","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-10-29T13:06:19.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/3587866?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1711539608.0","currentOid":""},"activityList":{"items":[{"before":"809cc46de8712d0dfb02c7111264c51851faa262","after":"022c9990025e82076ca82ec9ebcd1dfc8be2ffcb","ref":"refs/heads/main","pushedAt":"2024-06-28T06:03:25.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"matrulda","name":"Matilda Åslin","path":"/matrulda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1584541?s=80&v=4"},"commit":{"message":"DATAOPS-716 Use customized list of adapters, FastQC (#60)\n\n* Use customized list of adapters, FastQC\r\n\r\nWhen hoovering over the adapter content plot in the the FastQC output\r\ndisplayed in the end of all seqreports the name of the adapter found\r\nis appearing. The adapters and names used are by default the ones\r\nspecified in the FastQC software. However, the provided list is outdated\r\nand many of the adapters are used in several library preparation kits. A\r\ncustomized list can now be used as input instead to look for adapters we\r\nuse at SNP&SEQ and to display relevant names when found.\r\n\r\nFiles changed:\r\n- New file, adapter_list_fastqc.txt, added in config/tool_config/ to\r\n specify the adapters to look for.\r\n- The fastqc command in main.nf is now updated with the additional\r\n a-flag that is used to specify the use of the file described under the\r\nprevious point.\r\n\r\n* Update config/tool_config/adapter_list_fastqc.txt\r\n\r\nCo-authored-by: Matilda Åslin \r\n\r\n* Update config/tool_config/adapter_list_fastqc.txt\r\n\r\nCo-authored-by: Matilda Åslin \r\n\r\n* Fixed indentation and permalink\r\n\r\n---------\r\n\r\nCo-authored-by: Matilda Åslin ","shortMessageHtmlLink":"DATAOPS-716 Use customized list of adapters, FastQC (#60)"}},{"before":"8e0d083a9350f6b04a3f602e59629e037b0bc780","after":"809cc46de8712d0dfb02c7111264c51851faa262","ref":"refs/heads/main","pushedAt":"2024-03-28T11:14:10.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"matrulda","name":"Matilda Åslin","path":"/matrulda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1584541?s=80&v=4"},"commit":{"message":"Increase job time for FastQC and Fastq screen (#59)\n\n* Increase job time for FastQC and Fastq screen\r\n\r\n* Increase even more","shortMessageHtmlLink":"Increase job time for FastQC and Fastq screen (#59)"}},{"before":"1f0cd1917dd117b88d046d320ed3c77651f019e6","after":null,"ref":"refs/heads/dependabot/pip/black-24.3.0","pushedAt":"2024-03-27T11:40:08.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":"1375149b668f26793c92b20eac924e8f9ad1608e","after":"8e0d083a9350f6b04a3f602e59629e037b0bc780","ref":"refs/heads/main","pushedAt":"2024-03-27T11:40:01.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"matrulda","name":"Matilda Åslin","path":"/matrulda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1584541?s=80&v=4"},"commit":{"message":"Bump black from 23.3.0 to 24.3.0 (#58)\n\nBumps [black](https://github.com/psf/black) from 23.3.0 to 24.3.0.\r\n- [Release notes](https://github.com/psf/black/releases)\r\n- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)\r\n- [Commits](https://github.com/psf/black/compare/23.3.0...24.3.0)\r\n\r\n---\r\nupdated-dependencies:\r\n- dependency-name: black\r\n dependency-type: direct:development\r\n...\r\n\r\nSigned-off-by: dependabot[bot] \r\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>","shortMessageHtmlLink":"Bump black from 23.3.0 to 24.3.0 (#58)"}},{"before":"29fddb4e1f401a506367727813c3ddf49147ee24","after":null,"ref":"refs/heads/dev","pushedAt":"2024-03-27T11:24:17.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"matrulda","name":"Matilda Åslin","path":"/matrulda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1584541?s=80&v=4"}},{"before":"b5b720adfefd45016eab6f51724c11e289ef0040","after":null,"ref":"refs/heads/master","pushedAt":"2024-03-27T11:24:10.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"matrulda","name":"Matilda Åslin","path":"/matrulda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1584541?s=80&v=4"}},{"before":null,"after":"1f0cd1917dd117b88d046d320ed3c77651f019e6","ref":"refs/heads/dependabot/pip/black-24.3.0","pushedAt":"2024-03-20T17:55:07.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump black from 23.3.0 to 24.3.0\n\nBumps [black](https://github.com/psf/black) from 23.3.0 to 24.3.0.\n- [Release notes](https://github.com/psf/black/releases)\n- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)\n- [Commits](https://github.com/psf/black/compare/23.3.0...24.3.0)\n\n---\nupdated-dependencies:\n- dependency-name: black\n dependency-type: direct:development\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump black from 23.3.0 to 24.3.0"}},{"before":"d88e32b52b9bdc94eeac85fbffc8ccea2397f7ac","after":"1375149b668f26793c92b20eac924e8f9ad1608e","ref":"refs/heads/main","pushedAt":"2024-03-12T09:50:29.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"Aratz","name":"Adrien Coulier","path":"/Aratz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1695233?s=80&v=4"},"commit":{"message":"Merge pull request #57 from Aratz/DEVELOP-2651_demux\n\nRead version info from `nf-core/demultiplex` version file","shortMessageHtmlLink":"Merge pull request #57 from Aratz/DEVELOP-2651_demux"}},{"before":"d37769fb4c044f5cf39f3176dba1d194d8bea696","after":"d88e32b52b9bdc94eeac85fbffc8ccea2397f7ac","ref":"refs/heads/main","pushedAt":"2024-03-06T15:32:22.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"nkongenelly","name":null,"path":"/nkongenelly","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25079360?s=80&v=4"},"commit":{"message":"DEVELOP-721: removing checkqc threshold check (#55)\n\n* DEVELOP-721: removing checkqc threshold check\r\n\r\n* DEVELOP-721: Updated unit tests","shortMessageHtmlLink":"DEVELOP-721: removing checkqc threshold check (#55)"}},{"before":"d1e39f9b6ac15871d9c134fdb44df7d65d0b8de6","after":"d37769fb4c044f5cf39f3176dba1d194d8bea696","ref":"refs/heads/main","pushedAt":"2024-03-04T15:32:22.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"nkongenelly","name":null,"path":"/nkongenelly","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25079360?s=80&v=4"},"commit":{"message":"Merge pull request #56 from nkongenelly/DEVELOP-732_use_closest_read_length\n\nFormatted with black and added pull-request event trigger on GHA","shortMessageHtmlLink":"Merge pull request #56 from nkongenelly/DEVELOP-732_use_closest_read_…"}},{"before":"57b18a9db8843d74ec356e4cfb3306edf9d0eb4b","after":"d1e39f9b6ac15871d9c134fdb44df7d65d0b8de6","ref":"refs/heads/main","pushedAt":"2024-03-04T14:50:07.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"nkongenelly","name":null,"path":"/nkongenelly","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25079360?s=80&v=4"},"commit":{"message":"Merge pull request #54 from nkongenelly/DEVELOP-732_use_closest_read_length\n\nDEVELOP:732:Use closest read length when fetching QC thresholds","shortMessageHtmlLink":"Merge pull request #54 from nkongenelly/DEVELOP-732_use_closest_read_…"}},{"before":"8afdd01bb21b2b4e1811860e6d8c40c36682b371","after":"57b18a9db8843d74ec356e4cfb3306edf9d0eb4b","ref":"refs/heads/main","pushedAt":"2024-03-04T14:47:02.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"nkongenelly","name":null,"path":"/nkongenelly","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25079360?s=80&v=4"},"commit":{"message":"Merge pull request #53 from nkongenelly/DATAOPS-626_update_multiqc_image\n\nDATAOPS-626: Updated multiqc container","shortMessageHtmlLink":"Merge pull request #53 from nkongenelly/DATAOPS-626_update_multiqc_image"}},{"before":"29fddb4e1f401a506367727813c3ddf49147ee24","after":"8afdd01bb21b2b4e1811860e6d8c40c36682b371","ref":"refs/heads/main","pushedAt":"2023-12-12T13:31:25.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"matrulda","name":"Matilda Åslin","path":"/matrulda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1584541?s=80&v=4"},"commit":{"message":"DATAOPS-524: novaseqxplus v1.2.0 upgrade (#52)\n\n* Update way flowcell type is fetched for NovaSeq X\r\n\r\n* Update README to reflect that we only have one main branch\r\n\r\n* Update bin/get_metadata.py\r\n\r\nCo-authored-by: Adrien Coulier \r\n\r\n* Bump version to 1.2.0\r\n\r\n---------\r\n\r\nCo-authored-by: Adrien Coulier ","shortMessageHtmlLink":"DATAOPS-524: novaseqxplus v1.2.0 upgrade (#52)"}},{"before":null,"after":"29fddb4e1f401a506367727813c3ddf49147ee24","ref":"refs/heads/main","pushedAt":"2023-12-12T12:07:32.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"matrulda","name":"Matilda Åslin","path":"/matrulda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1584541?s=80&v=4"},"commit":{"message":"Merge pull request #51 from matrulda/novaseq_x_plus\n\nAdd support for Novaseq X Plus","shortMessageHtmlLink":"Merge pull request #51 from matrulda/novaseq_x_plus"}},{"before":"6003094d3fe7a26e012701551973564b384b52fe","after":"29fddb4e1f401a506367727813c3ddf49147ee24","ref":"refs/heads/dev","pushedAt":"2023-06-21T08:21:06.382Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"b97pla","name":"Pontus Larsson","path":"/b97pla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/886632?s=80&v=4"},"commit":{"message":"Merge pull request #51 from matrulda/novaseq_x_plus\n\nAdd support for Novaseq X Plus","shortMessageHtmlLink":"Merge pull request #51 from matrulda/novaseq_x_plus"}},{"before":"39e052839d0652465b6cffec8de95dac1d010865","after":null,"ref":"refs/heads/dependabot/pip/lxml-4.9.1","pushedAt":"2023-06-15T06:37:08.666Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEcYbZPAA","startCursor":null,"endCursor":null}},"title":"Activity · Molmed/seqreports"}