README.md

Coded by: Mohamed Masoud [email protected] , 2019

Slide Masking Demo

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Slide Mask Demo is a webix based interactive learning environment to binary classify WSI regions of interest. It produces the heatmap and mask for the region of interests. It can run on local WSI or access remotely images with OpenSeadragon.

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Whole Slide Images Registration Demo

Demo shows registration of whole slide images after preprocessing them. It can run on local or remotely images with OpenSeadragon.

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Annotations App Demo

Demo shows cell masks of Tonsil example TONSIL-1_40X_cellMask.tif .

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Multiplex Blending Demo V1

Demo shows compositing and blending of OME files of whole slide image frames .

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Tree Based Whole Slide Images Galleries and Overlaying Demo

Demo shows tree based panel for whole slide images selection and overlaying from the server.

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Tree Based Multiplex Viewer and OME Channel Organizer (Under Construction)

Demo shows a proof on concept of blending OME Frames.

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Demo visualize OME Channel Organizer functionality.

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Whole Brain Inference at the Browser

Demo shows segmenation of 3D brain MRI at the browser based on a pretrained MeshNet model.