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annotate_peptides function does not show error for mismatching identifiers #2

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MiguelCos opened this issue Mar 30, 2022 · 1 comment
Open

annotate_peptides function does not show error for mismatching identifiers #2

MiguelCos opened this issue Mar 30, 2022 · 1 comment

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@MiguelCos
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The for loop in the function will stop if it doesn't find a match between protein identifiers and the fasta file.

It doesn't show an error if this is the case. This should be corrected.
@MiguelCos
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The error was due to the format of the list containing the fasta.

Just test in annotate_peptides if the protein sequence is not a list (it should be string) and throw an error message ("Use as.string = TRUE in read.fasta()......")

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@MiguelCos