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I am getting an issue regarding memory, how to solve this ? #71

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devarajarun opened this issue Mar 20, 2022 · 0 comments
Open

I am getting an issue regarding memory, how to solve this ? #71

devarajarun opened this issue Mar 20, 2022 · 0 comments

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@devarajarun
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(deepbgc) [devaraja@rocket ~]$ deepbgc pipeline deepbgc/deepbgc-0.1-3.29/test/data/BGC0000015.fa


| _ \ ___ ___ ____ | __ ) / ) / )
| | \ / _ / _ \ _ | _ \ | | _ | |
| |
/ / __/ __/ |
) | |
) || |
| || |
_
|/ _|_| /|/ _| ___)
=================|
|===== version 0.1.29 =====
INFO 20/03 11:17:39 Loading model from: /gpfs/space/home/devaraja/.local/share/deepbgc/data/0.1.0/detector/deepbgc.pkl
Using TensorFlow backend.
WARNING 20/03 11:17:45 From /gpfs/space/home/devaraja/.conda/envs/deepbgc/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:74: The name tf.get_default_graph is deprecated. Please use tf.compat.v1.get_default_graph instead.

WARNING 20/03 11:17:45 From /gpfs/space/home/devaraja/.conda/envs/deepbgc/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:517: The name tf.placeholder is deprecated. Please use tf.compat.v1.placeholder instead.

WARNING 20/03 11:17:45 From /gpfs/space/home/devaraja/.conda/envs/deepbgc/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:4138: The name tf.random_uniform is deprecated. Please use tf.random.uniform instead.

WARNING 20/03 11:17:45 From /gpfs/space/home/devaraja/.conda/envs/deepbgc/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:133: The name tf.placeholder_with_default is deprecated. Please use tf.compat.v1.placeholder_with_default instead.

WARNING 20/03 11:17:45 From /gpfs/space/home/devaraja/.conda/envs/deepbgc/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:3445: calling dropout (from tensorflow.python.ops.nn_ops) with keep_prob is deprecated and will be removed in a future version.
Instructions for updating:
Please use rate instead of keep_prob. Rate should be set to rate = 1 - keep_prob.
WARNING 20/03 11:17:46 From /gpfs/space/home/devaraja/.conda/envs/deepbgc/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:174: The name tf.get_default_session is deprecated. Please use tf.compat.v1.get_default_session instead.

terminate called after throwing an instance of 'std::system_error'
what(): Resource temporarily unavailable
Aborted

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