writeinfofiles is not defined

[mkandziora]

command: physcraper_run.py -s pg_55 -t tree5864 -tb -o pg_55

.Traceback (most recent call last):
File "/root/physcraper_27072020/venv3/bin/physcraper_run.py", line 7, in
exec(compile(f.read(), file, 'exec'))
File "/root/physcraper_27072020/physcraper-main/bin/physcraper_run.py", line 220, in
scraper.calculate_final_tree(boot_reps = boot_reps)
File "/root/physcraper_27072020/physcraper-main/physcraper/scrape.py", line 1215, in calculate_final_tree
besttreepath = self.est_full_tree()
File "/root/physcraper_27072020/physcraper-main/physcraper/scrape.py", line 1122, in est_full_tree
alignment = self.align_new_seqs()
File "/root/physcraper_27072020/physcraper-main/physcraper/scrape.py", line 931, in align_new_seqs
self.read_blast_wrapper()
File "/root/physcraper_27072020/physcraper-main/physcraper/scrape.py", line 580, in read_blast_wrapper
self.read_webbased_blast_query(fn_path)
File "/root/physcraper_27072020/physcraper-main/physcraper/scrape.py", line 540, in read_webbased_blast_query
writeinfofiles.write_not_added_info(self, gb_id, "evalue threshold not passed")
NameError: name 'writeinfofiles' is not defined

[snacktavish]

Good catch! this should be fixed in c0ee604

I'm just running some checks now.

[snacktavish]

My first fix introduced a new bug! But I have fixed both now, and merged to main. Should work now!