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sankey diagram not showing width for proportional V/J usage (fig 1d) #6

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jjfox25 opened this issue Apr 11, 2023 · 0 comments
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@jjfox25
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jjfox25 commented Apr 11, 2023

Hello, I'm having an issue creating a sankey diagram using the "gene_usage_analysis.ipynb" notebook. I am able to recreate the connections in figure 1d of the Frontiers in Immunology, but all the connections are going to a point rather than showing proportions with width.

This plot was made using the unchanged code from "figure1.ipynb" from the pyTCR_publication git repository.

bokeh_plot

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