tRNA-Seq quantification benchmarking manuscript analysis

Processing and plotting of output from the tRNA-Seq simulation and quantification pipeline.

Manuscript pre-print coming shortly..

Repository structure

• input: output from tRNA-Seq simulation and quantification pipeline for further analysis/plotting
• notebooks: Notebooks to perform analysis/plotting. These should be run in the order of the numerical prefix
• results: Results from notebooks
  • plots: Plots for manuscript
• R: R code used across notebooks

Dependencies

The R packages used and their versions are shown in sessionInfo.pdf