first draft to co-authors.

Author: iancze

LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2019 - 2023 Ian Czekala and contributors
+Copyright (c) 2019 - 2025 Ian Czekala and contributors
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

paper/paper.bib

@@ -436,4 +436,199 @@ @article{harris20
   doi       = {10.1038/s41586-020-2649-2},
   publisher = {Springer Science and Business Media {LLC}},
   url       = {https://doi.org/10.1038/s41586-020-2649-2}
+}
+
+@book{condon16,
+  author  = {{Condon}, James J. and {Ransom}, Scott M.},
+  title   = {{Essential Radio Astronomy}},
+  year    = 2016,
+  adsurl  = {https://ui.adsabs.harvard.edu/abs/2016era..book.....C},
+  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+@article{baydin18,
+  author  = {Atilim Gunes Baydin and Barak A. Pearlmutter and Alexey Andreyevich Radul and Jeffrey Mark Siskind},
+  title   = {Automatic Differentiation in Machine Learning: a Survey},
+  journal = {Journal of Machine Learning Research},
+  year    = {2018},
+  volume  = {18},
+  number  = {153},
+  pages   = {1--43},
+  url     = {http://jmlr.org/papers/v18/17-468.html}
+}
+
+@article{loshchilov17,
+  author        = {{Loshchilov}, Ilya and {Hutter}, Frank},
+  title         = {{Decoupled Weight Decay Regularization}},
+  journal       = {arXiv e-prints},
+  keywords      = {Computer Science - Machine Learning, Computer Science - Neural and Evolutionary Computing, Mathematics - Optimization and Control},
+  year          = 2017,
+  month         = nov,
+  eid           = {arXiv:1711.05101},
+  pages         = {arXiv:1711.05101},
+  doi           = {10.48550/arXiv.1711.05101},
+  archiveprefix = {arXiv},
+  eprint        = {1711.05101},
+  primaryclass  = {cs.LG},
+  adsurl        = {https://ui.adsabs.harvard.edu/abs/2017arXiv171105101L},
+  adsnote       = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+@article{pyro19,
+  author     = {Bingham, Eli and Chen, Jonathan P. and Jankowiak, Martin and Obermeyer, Fritz and Pradhan, Neeraj and Karaletsos, Theofanis and Singh, Rohit and Szerlip, Paul and Horsfall, Paul and Goodman, Noah D.},
+  title      = {Pyro: deep universal probabilistic programming},
+  year       = {2019},
+  issue_date = {January 2019},
+  publisher  = {JMLR.org},
+  volume     = {20},
+  number     = {1},
+  issn       = {1532-4435},
+  abstract   = {Pyro is a probabilistic programming language built on Python as a platform for developing advanced probabilistic models in AI research. To scale to large data sets and high-dimensional models, Pyro uses stochastic variational inference algorithms and probability distributions built on top of PyTorch, a modern GPU-accelerated deep learning framework. To accommodate complex or model-specific algorithmic behavior, Pyro leverages Poutine, a library of composable building blocks for modifying the behavior of probabilistic programs.},
+  journal    = {J. Mach. Learn. Res.},
+  month      = {jan},
+  pages      = {973–978},
+  numpages   = {6},
+  keywords   = {probabilistic programming, graphical models, generative models, deep learning, approximate Bayesian inference}
+}
+
+@article{tazzari18,
+  author        = {{Tazzari}, M. and {Beaujean}, F. and {Testi}, L.},
+  title         = {{GALARIO: a GPU accelerated library for analysing radio interferometer observations}},
+  journal       = {\mnras},
+  archiveprefix = {arXiv},
+  eprint        = {1709.06999},
+  primaryclass  = {astro-ph.IM},
+  keywords      = {methods: numerical, techniques: interferometric, submillimetre: general},
+  year          = 2018,
+  month         = jun,
+  volume        = 476,
+  pages         = {4527-4542},
+  doi           = {10.1093/mnras/sty409},
+  adsurl        = {http://adsabs.harvard.edu/abs/2018MNRAS.476.4527T},
+  adsnote       = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+@article{guzman18,
+  author        = {{Guzm{\'a}n}, Viviana V. and {Huang}, Jane and {Andrews}, Sean M. and {Isella}, Andrea and {P{\'e}rez}, Laura M. and {Carpenter}, John M. and {Dullemond}, Cornelis P. and {Ricci}, Luca and {Birnstiel}, Tilman and {Zhang}, Shangjia and {Zhu}, Zhaohuan and {Bai}, Xue-Ning and {Benisty}, Myriam and {{\"O}berg}, Karin I. and {Wilner}, David J.},
+  title         = {{The Disk Substructures at High Angular Resolution Program (DSHARP). VIII. The Rich Ringed Substructures in the AS 209 Disk}},
+  journal       = {\apjl},
+  keywords      = {dust, extinction, protoplanetary disks, techniques: high angular resolution, Astrophysics - Solar and Stellar Astrophysics, Astrophysics - Earth and Planetary Astrophysics, Astrophysics - Astrophysics of Galaxies},
+  year          = 2018,
+  month         = dec,
+  volume        = {869},
+  number        = {2},
+  eid           = {L48},
+  pages         = {L48},
+  doi           = {10.3847/2041-8213/aaedae},
+  archiveprefix = {arXiv},
+  eprint        = {1812.04046},
+  primaryclass  = {astro-ph.SR},
+  adsurl        = {https://ui.adsabs.harvard.edu/abs/2018ApJ...869L..48G},
+  adsnote       = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+@article{dia23,
+  author        = {{Dia}, Noe and {Yantovski-Barth}, M.~J. and {Adam}, Alexandre and {Bowles}, Micah and {Lemos}, Pablo and {Scaife}, Anna M.~M. and {Hezaveh}, Yashar and {Perreault-Levasseur}, Laurence},
+  title         = {{Bayesian Imaging for Radio Interferometry with Score-Based Priors}},
+  journal       = {arXiv e-prints},
+  keywords      = {Astrophysics - Instrumentation and Methods for Astrophysics, Computer Science - Computer Vision and Pattern Recognition},
+  year          = 2023,
+  month         = nov,
+  eid           = {arXiv:2311.18012},
+  pages         = {arXiv:2311.18012},
+  doi           = {10.48550/arXiv.2311.18012},
+  archiveprefix = {arXiv},
+  eprint        = {2311.18012},
+  primaryclass  = {astro-ph.IM},
+  adsurl        = {https://ui.adsabs.harvard.edu/abs/2023arXiv231118012D},
+  adsnote       = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+@article{huang18b,
+  author        = {{Huang}, Jane and {Andrews}, Sean M. and {P{\'e}rez}, Laura M. and {Zhu}, Zhaohuan and {Dullemond}, Cornelis P. and {Isella}, Andrea and {Benisty}, Myriam and {Bai}, Xue-Ning and {Birnstiel}, Tilman and {Carpenter}, John M. and {Guzm{\'a}n}, Viviana V. and {Hughes}, A. Meredith and {{\"O}berg}, Karin I. and {Ricci}, Luca and {Wilner}, David J. and {Zhang}, Shangjia},
+  title         = {{The Disk Substructures at High Angular Resolution Project (DSHARP). III. Spiral Structures in the Millimeter Continuum of the Elias 27, IM Lup, and WaOph 6 Disks}},
+  journal       = {\apjl},
+  keywords      = {dust, extinction, protoplanetary disks, techniques: high angular resolution, Astrophysics - Solar and Stellar Astrophysics, Astrophysics - Earth and Planetary Astrophysics, Astrophysics - Astrophysics of Galaxies},
+  year          = 2018,
+  month         = dec,
+  volume        = {869},
+  number        = {2},
+  eid           = {L43},
+  pages         = {L43},
+  doi           = {10.3847/2041-8213/aaf7a0},
+  archiveprefix = {arXiv},
+  eprint        = {1812.04193},
+  primaryclass  = {astro-ph.SR},
+  adsurl        = {https://ui.adsabs.harvard.edu/abs/2018ApJ...869L..43H},
+  adsnote       = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+@article{foreman-mackey13,
+  author        = {{Foreman-Mackey}, Daniel and {Hogg}, David W. and {Lang}, Dustin and {Goodman}, Jonathan},
+  title         = {{emcee: The MCMC Hammer}},
+  journal       = {\pasp},
+  keywords      = {Astrophysics - Instrumentation and Methods for Astrophysics, Physics - Computational Physics, Statistics - Computation},
+  year          = 2013,
+  month         = mar,
+  volume        = {125},
+  number        = {925},
+  pages         = {306},
+  doi           = {10.1086/670067},
+  archiveprefix = {arXiv},
+  eprint        = {1202.3665},
+  primaryclass  = {astro-ph.IM},
+  adsurl        = {https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F},
+  adsnote       = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+@article{hoffman14,
+  title   = {The No-U-Turn sampler: adaptively setting path lengths in Hamiltonian Monte Carlo.},
+  author  = {Hoffman, Matthew D and Gelman, Andrew and others},
+  journal = {J. Mach. Learn. Res.},
+  volume  = {15},
+  number  = {1},
+  pages   = {1593--1623},
+  year    = {2014}
+}
+
+@article{neal12,
+  title   = {MCMC using Hamiltonian dynamics},
+  author  = {Neal, Radford M},
+  journal = {arXiv preprint arXiv:1206.1901},
+  year    = {2012}
+}
+
+@article{hamaker96,
+  author   = {{Hamaker}, J.~P. and {Bregman}, J.~D. and {Sault}, R.~J.},
+  title    = {{Understanding radio polarimetry. I. Mathematical foundations.}},
+  journal  = {\aaps},
+  keywords = {METHODS: ANALYTICAL, METHODS: DATA ANALYSIS, TECHNIQUES: INTERFEROMETERS, TECHNIQUES: POLARIMETERS},
+  year     = 1996,
+  month    = may,
+  volume   = {117},
+  pages    = {137-147},
+  adsurl   = {https://ui.adsabs.harvard.edu/abs/1996A&AS..117..137H},
+  adsnote  = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+@article{smirnov11a,
+  author        = {{Smirnov}, O.~M.},
+  title         = {{Revisiting the radio interferometer measurement equation. I. A full-sky Jones formalism}},
+  journal       = {\aap},
+  keywords      = {methods: numerical, methods: analytical, methods: data analysis, techniques: interferometric, techniques: polarimetric, Astrophysics - Instrumentation and Methods for Astrophysics},
+  year          = 2011,
+  month         = mar,
+  volume        = {527},
+  eid           = {A106},
+  pages         = {A106},
+  doi           = {10.1051/0004-6361/201016082},
+  archiveprefix = {arXiv},
+  eprint        = {1101.1764},
+  primaryclass  = {astro-ph.IM},
+  adsurl        = {https://ui.adsabs.harvard.edu/abs/2011A&A...527A.106S},
+  adsnote       = {Provided by the SAO/NASA Astrophysics Data System}
 }