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fixed overflow bugs; optimized memory usage; added option for including block features
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‎LICENSE.md

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Copyright (c) 2016 Weiwei Yang
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.

‎README.md

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- `-g <gamma-value>`: Parameter of Dirichlet prior for block distribution (default: 1.0). Must be a positive real number.
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- `--blocks <num-blocks>`: Number of blocks (default: 10). Must be a positive integer.
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- `--output-wsbm <wsbm-output-file>`: File for [WSBM](#wsbm_cmd)-identified blocks. See [WSBM](#wsbm_cmd) for details.
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- `--block-feature`: Include block features in link prediction (default: false).
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#### <h4 id="lex_wsb_med_rtm_cmd">Lex-WSB-RTM with Hinge Loss (Lex-WSB-Med-RTM)</h4>
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‎doc/index-files/index-13.html

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<dd>&nbsp;</dd>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/rtm/lex_wsb_med_rtm/LexWSBMedRTM.html#readCorpus-java.lang.String-">readCorpus(String)</a></span> - Method in class yang.weiwei.lda.rtm.lex_wsb_med_rtm.<a href="../yang/weiwei/lda/rtm/lex_wsb_med_rtm/LexWSBMedRTM.html" title="class in yang.weiwei.lda.rtm.lex_wsb_med_rtm">LexWSBMedRTM</a></dt>
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<dd>&nbsp;</dd>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/rtm/lex_wsb_rtm/LexWSBRTM.html#readCorpus-java.lang.String-">readCorpus(String)</a></span> - Method in class yang.weiwei.lda.rtm.lex_wsb_rtm.<a href="../yang/weiwei/lda/rtm/lex_wsb_rtm/LexWSBRTM.html" title="class in yang.weiwei.lda.rtm.lex_wsb_rtm">LexWSBRTM</a></dt>
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<dd>&nbsp;</dd>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/rtm/RTM.html#readCorpus-java.lang.String-">readCorpus(String)</a></span> - Method in class yang.weiwei.lda.rtm.<a href="../yang/weiwei/lda/rtm/RTM.html" title="class in yang.weiwei.lda.rtm">RTM</a></dt>
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<dd>&nbsp;</dd>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/slda/bs_lda/BSLDA.html#readCorpus-java.lang.String-">readCorpus(String)</a></span> - Method in class yang.weiwei.lda.slda.bs_lda.<a href="../yang/weiwei/lda/slda/bs_lda/BSLDA.html" title="class in yang.weiwei.lda.slda.bs_lda">BSLDA</a></dt>
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<dd>&nbsp;</dd>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/slda/lex_wsb_bs_lda/LexWSBBSLDA.html#readCorpus-java.lang.String-">readCorpus(String)</a></span> - Method in class yang.weiwei.lda.slda.lex_wsb_bs_lda.<a href="../yang/weiwei/lda/slda/lex_wsb_bs_lda/LexWSBBSLDA.html" title="class in yang.weiwei.lda.slda.lex_wsb_bs_lda">LexWSBBSLDA</a></dt>
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<dd>&nbsp;</dd>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/slda/lex_wsb_med_lda/LexWSBMedLDA.html#readCorpus-java.lang.String-">readCorpus(String)</a></span> - Method in class yang.weiwei.lda.slda.lex_wsb_med_lda.<a href="../yang/weiwei/lda/slda/lex_wsb_med_lda/LexWSBMedLDA.html" title="class in yang.weiwei.lda.slda.lex_wsb_med_lda">LexWSBMedLDA</a></dt>
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<dd>&nbsp;</dd>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/slda/SLDA.html#readCorpus-java.lang.String-">readCorpus(String)</a></span> - Method in class yang.weiwei.lda.slda.<a href="../yang/weiwei/lda/slda/SLDA.html" title="class in yang.weiwei.lda.slda">SLDA</a></dt>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/wsb_tm/WSBTM.html#readCorpus-java.lang.String-">readCorpus(String)</a></span> - Method in class yang.weiwei.lda.wsb_tm.<a href="../yang/weiwei/lda/wsb_tm/WSBTM.html" title="class in yang.weiwei.lda.wsb_tm">WSBTM</a></dt>
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<dd>&nbsp;</dd>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/rtm/lex_wsb_med_rtm/LexWSBMedRTM.html#readGraph-java.lang.String-int-">readGraph(String, int)</a></span> - Method in class yang.weiwei.lda.rtm.lex_wsb_med_rtm.<a href="../yang/weiwei/lda/rtm/lex_wsb_med_rtm/LexWSBMedRTM.html" title="class in yang.weiwei.lda.rtm.lex_wsb_med_rtm">LexWSBMedRTM</a></dt>
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<dd>&nbsp;</dd>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/rtm/RTM.html#readGraph-java.lang.String-int-">readGraph(String, int)</a></span> - Method in class yang.weiwei.lda.rtm.<a href="../yang/weiwei/lda/rtm/RTM.html" title="class in yang.weiwei.lda.rtm">RTM</a></dt>

‎doc/index-files/index-14.html

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<dd>&nbsp;</dd>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/util/MathUtil.html#sqr-double-">sqr(double)</a></span> - Static method in class yang.weiwei.util.<a href="../yang/weiwei/util/MathUtil.html" title="class in yang.weiwei.util">MathUtil</a></dt>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/util/MathUtil.html#sqr-int-">sqr(int)</a></span> - Static method in class yang.weiwei.util.<a href="../yang/weiwei/util/MathUtil.html" title="class in yang.weiwei.util">MathUtil</a></dt>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/preprocess/Stemmer.html#stem-java.lang.String-">stem(String)</a></span> - Method in class yang.weiwei.preprocess.<a href="../yang/weiwei/preprocess/Stemmer.html" title="class in yang.weiwei.preprocess">Stemmer</a></dt>
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<div class="block">Stem a single word</div>

‎doc/index-files/index-2.html

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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/LDASynParam.html#beta">beta</a></span> - Variable in class yang.weiwei.lda.<a href="../yang/weiwei/lda/LDASynParam.html" title="class in yang.weiwei.lda">LDASynParam</a></dt>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/LDAParam.html#blockFeat">blockFeat</a></span> - Variable in class yang.weiwei.lda.<a href="../yang/weiwei/lda/LDAParam.html" title="class in yang.weiwei.lda">LDAParam</a></dt>
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<div class="block">Include block feature in link prediction (default: false)</div>
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</dd>
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<dt><span class="memberNameLink"><a href="../yang/weiwei/lda/util/LDAResult.html#BLOCKLOGLIKELIHOOD">BLOCKLOGLIKELIHOOD</a></span> - Static variable in class yang.weiwei.lda.util.<a href="../yang/weiwei/lda/util/LDAResult.html" title="class in yang.weiwei.lda.util">LDAResult</a></dt>
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<dt><a href="../yang/weiwei/lda/bp_lda/BPLDA.html" title="class in yang.weiwei.lda.bp_lda"><span class="typeNameLink">BPLDA</span></a> - Class in <a href="../yang/weiwei/lda/bp_lda/package-summary.html">yang.weiwei.lda.bp_lda</a></dt>

‎doc/yang/weiwei/lda/LDAParam.html

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</td>
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<td class="colFirst"><code>boolean</code></td>
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<td class="colLast"><code><span class="memberNameLink"><a href="../../../yang/weiwei/lda/LDAParam.html#blockFeat">blockFeat</a></span></code>
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<div class="block">Include block feature in link prediction (default: false)</div>
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<td class="colFirst"><code>double</code></td>
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<div class="block">Regularization parameter for hinge loss (default: 1.0)</div>
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<div class="block">Parameter of block distribution's Dirichlet prior in WSBM (default 1.0)</div>
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<div class="block">Variance of downstream models' weights' Gaussian prior (default: 1.0)</div>
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‎doc/yang/weiwei/lda/rtm/lex_wsb_med_rtm/LexWSBMedRTM.html

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‎doc/yang/weiwei/lda/rtm/lex_wsb_rtm/LexWSBRTM.html

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<h3>Methods inherited from class&nbsp;yang.weiwei.lda.rtm.<a href="../../../../../yang/weiwei/lda/rtm/RTM.html" title="class in yang.weiwei.lda.rtm">RTM</a></h3>
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<h4>readCorpus</h4>
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<pre>public&nbsp;void&nbsp;readCorpus(java.lang.String&nbsp;corpusFileName)
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throws java.io.IOException</pre>
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<div class="block"><span class="descfrmTypeLabel">Description copied from class:&nbsp;<code><a href="../../../../../yang/weiwei/lda/LDA.html#readCorpus-java.lang.String-">LDA</a></code></span></div>
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<div class="block">Read corpus</div>
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<dl>
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<dt><span class="overrideSpecifyLabel">Overrides:</span></dt>
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<dd><code><a href="../../../../../yang/weiwei/lda/rtm/RTM.html#readCorpus-java.lang.String-">readCorpus</a></code>&nbsp;in class&nbsp;<code><a href="../../../../../yang/weiwei/lda/rtm/RTM.html" title="class in yang.weiwei.lda.rtm">RTM</a></code></dd>
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<dt><span class="paramLabel">Parameters:</span></dt>
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<dd><code>corpusFileName</code> - Corpus file name</dd>
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<dt><span class="throwsLabel">Throws:</span></dt>
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<dd><code>java.io.IOException</code> - IOException</dd>
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