v1.7.6

[1.7.6] - 2026-04-07

• Move scyan to our new GitHub organization: prism-oncology (WIP)
• Move to uv and ruff
• Upgrade dependencies to now use python>=3.11 and more recent deps versions

v1.6.2

[1.6.2] - 2024-05-22

Hotfix: use get_cmap from matplotlib.pyplot (#35)

v1.6.1

[1.6.1] - 2024-04-08

Changed

• More dependencies version support
• Use "cpu" accelerator by default

Added

• Spillover matrix reading + function to apply it in scyan.preprocess

Fixed

• Issue when running .predict after training on GPU (#34)

v1.5.3

• Fix GPU usage

v1.5.2

Enable GPU usage

v1.5.1

Fixes

• Model can be trained when adata.n_obs < batch_size

Features

• scyan.tools.PolygonGatingScatter to select cells on a 2D-scatterplot
• scyan.tools.leiden (leiden clustering, as in scanpy)

v1.5.0

• new plots (pop dynamics and percentage)
• major documentation update
• update the "cite us" with the link to the published paper

v1.4.0

• Batch effect correction: handle NA markers (column full of NA)
• Input/Output : new API design
• Handle expression continuums (new scyan.Scyan argument)
• Improved documentation
• Less dependencies

v1.3.4

• Improved documentation
• Model can be saved/loaded
• Can select cells on UMAP (via a polygon selector)
• New IO function: read_csv
• Make block color palette for hierarchical populations
• ... many others

v1.2.0

version 1.2.0