ExampleGenGraphicsParameters.txt

# version=param_v1.0.0

gen_graphics{

	# set frame width & size
	frame_width=5000
	frame_height=5000

	# Set to absolute path of svs file
	image_file="/data/isip/data/tuh_dpath_breast/deidentified/v3.0.0/svs/train/00477780_aaaaaagg/s000_2017/breast/00477780_aaaaaagg_s000_0hne_0000_b003_lvl001_t000.svs"

	# Set to absolute path of csv or xml file containing annotation data
	hypothesis_annotation_file="/data/isip/data/tuh_dpath_breast/deidentified/v3.0.0/svs/train/00477780_aaaaaagg/s000_2017/breast/00477780_aaaaaagg_s000_0hne_0000_b003_lvl001_t000.xml"
	reference_annotation_file="/data/isip/data/tuh_dpath_breast/deidentified/v3.0.0/svs/train/00477780_aaaaaagg/s000_2017/breast/00477780_aaaaaagg_s000_0hne_0000_b003_lvl001_t000.xml"

	# This is where the images will be output
	output_directory="/data/isip/exp/tuh_dpath/exp_0288/Machine-Learning-Applications-In-Digital-Pathology/nedc_mladp/data/example_graphics_output"

	# 1 for showing background image on plot 0 if not
	show_background_image=1

	# if showing backgroung image, set compression level
	compression=40

	# show frames on top of image
	show_frames=0

	# 1 if showing annotations 0 if not
	show_reference_annotations=1
	show_hypothesis_annotations=1

}