{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":268721837,"defaultBranch":"main","name":"HAMLET","ownerLogin":"LUMC","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-06-02T06:41:46.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/1418997?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1701957270.0","currentOid":""},"activityList":{"items":[{"before":"c283c863f747519106244b90239f5895dee62da2","after":"d0abd534e84427729e3001892c982fafe05e3ed3","ref":"refs/heads/main","pushedAt":"2024-08-22T10:01:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Switch to GITHUB_OUTPUT in actions","shortMessageHtmlLink":"Switch to GITHUB_OUTPUT in actions"}},{"before":"ce4368c9e07f515cd36d24a9c75857cd2490e35d","after":"c283c863f747519106244b90239f5895dee62da2","ref":"refs/heads/main","pushedAt":"2024-08-22T09:33:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Fix typo","shortMessageHtmlLink":"Fix typo"}},{"before":"e74d501f4d873f66b61aebf5521037350041b24e","after":"ce4368c9e07f515cd36d24a9c75857cd2490e35d","ref":"refs/heads/main","pushedAt":"2024-08-22T09:29:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Update actions to the latest version","shortMessageHtmlLink":"Update actions to the latest version"}},{"before":"3d85d85cb4a8bba2161960acf8435e42db0159cd","after":"e74d501f4d873f66b61aebf5521037350041b24e","ref":"refs/heads/main","pushedAt":"2024-08-19T14:42:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Keep incomplete output files when the tests fail","shortMessageHtmlLink":"Keep incomplete output files when the tests fail"}},{"before":"cc343dc7d3c1c1465555a5f8292ad015b9bc2bde","after":"3d85d85cb4a8bba2161960acf8435e42db0159cd","ref":"refs/heads/main","pushedAt":"2024-08-19T14:12:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Use snakemake profile in tests","shortMessageHtmlLink":"Use snakemake profile in tests"}},{"before":"91374e7dee6abbf91ea4a1d420f2320cbb0b56e5","after":"cc343dc7d3c1c1465555a5f8292ad015b9bc2bde","ref":"refs/heads/main","pushedAt":"2024-08-16T07:31:34.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Mark tmp folder as temporary","shortMessageHtmlLink":"Mark tmp folder as temporary"}},{"before":"ca5d4226266fdb2024a74c4c1a0389810c377543","after":"91374e7dee6abbf91ea4a1d420f2320cbb0b56e5","ref":"refs/heads/main","pushedAt":"2024-07-15T15:00:28.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"XLIU-hub","name":"X.Liu","path":"/XLIU-hub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34545147?s=80&v=4"},"commit":{"message":"Merge pull request #32 from XLIU-hub/main\n\nUpdate CHANGELOG","shortMessageHtmlLink":"Merge pull request #32 from XLIU-hub/main"}},{"before":"6d80631ba496c2e6b6b90828fd6f512343b7c2f6","after":"ca5d4226266fdb2024a74c4c1a0389810c377543","ref":"refs/heads/main","pushedAt":"2024-07-09T11:15:11.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"XLIU-hub","name":"X.Liu","path":"/XLIU-hub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34545147?s=80&v=4"},"commit":{"message":"Merge pull request #31 from XLIU-hub/main\n\nRevert local access","shortMessageHtmlLink":"Merge pull request #31 from XLIU-hub/main"}},{"before":"71f64db9a0d3b7ca79d92775fd1a45d19def678b","after":"6d80631ba496c2e6b6b90828fd6f512343b7c2f6","ref":"refs/heads/main","pushedAt":"2024-07-09T10:06:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"XLIU-hub","name":"X.Liu","path":"/XLIU-hub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34545147?s=80&v=4"},"commit":{"message":"Delete contents_seq","shortMessageHtmlLink":"Delete contents_seq"}},{"before":"66f1d233b3c788971fe667023f5ac97d23cfc923","after":"71f64db9a0d3b7ca79d92775fd1a45d19def678b","ref":"refs/heads/main","pushedAt":"2024-07-08T22:23:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"XLIU-hub","name":"X.Liu","path":"/XLIU-hub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34545147?s=80&v=4"},"commit":{"message":"Fix package not found error","shortMessageHtmlLink":"Fix package not found error"}},{"before":"892af7ae300274ef4d802bc7980adbb6943104c7","after":"66f1d233b3c788971fe667023f5ac97d23cfc923","ref":"refs/heads/main","pushedAt":"2024-07-08T20:06:35.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"XLIU-hub","name":"X.Liu","path":"/XLIU-hub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34545147?s=80&v=4"},"commit":{"message":"Update report templates","shortMessageHtmlLink":"Update report templates"}},{"before":"0ad934f737bc19e4b3558cc3c64737661a7ff9fe","after":"892af7ae300274ef4d802bc7980adbb6943104c7","ref":"refs/heads/main","pushedAt":"2024-06-06T09:11:15.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Remove FastQ files when no longer needed","shortMessageHtmlLink":"Remove FastQ files when no longer needed"}},{"before":"b8ebe5e3461a4243977acc52877ee808a727ce3b","after":"0ad934f737bc19e4b3558cc3c64737661a7ff9fe","ref":"refs/heads/main","pushedAt":"2024-05-30T15:10:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Remove FastQC from qc-seq module","shortMessageHtmlLink":"Remove FastQC from qc-seq module"}},{"before":"91d22131f6ce3a7adca8fe8fcbf575894237f703","after":"b8ebe5e3461a4243977acc52877ee808a727ce3b","ref":"refs/heads/main","pushedAt":"2024-05-29T14:53:31.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Customize the MultiQC report to better suit the HAMLET pipeline","shortMessageHtmlLink":"Customize the MultiQC report to better suit the HAMLET pipeline"}},{"before":"854e3d5b408004f522b413c72dbbf8c22585feed","after":"91d22131f6ce3a7adca8fe8fcbf575894237f703","ref":"refs/heads/main","pushedAt":"2024-04-04T11:53:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Update changelog","shortMessageHtmlLink":"Update changelog"}},{"before":"251f606e100ff6d638bc4776b34ca46f31bb089e","after":"854e3d5b408004f522b413c72dbbf8c22585feed","ref":"refs/heads/main","pushedAt":"2024-03-26T15:58:12.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Add MultiQC to snv-indels module","shortMessageHtmlLink":"Add MultiQC to snv-indels module"}},{"before":"51ba68d5abf11c042f650bc5ee2e87c678ce1865","after":"251f606e100ff6d638bc4776b34ca46f31bb089e","ref":"refs/heads/main","pushedAt":"2024-03-21T12:00:03.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Fix changelog formatting","shortMessageHtmlLink":"Fix changelog formatting"}},{"before":"e7b2170af2805ca6a65e9c542e7901ffb08fcb31","after":"51ba68d5abf11c042f650bc5ee2e87c678ce1865","ref":"refs/heads/main","pushedAt":"2024-03-08T09:09:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"XLIU-hub","name":"X.Liu","path":"/XLIU-hub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34545147?s=80&v=4"},"commit":{"message":"fix snakefmt and its dependecy black version","shortMessageHtmlLink":"fix snakefmt and its dependecy black version"}},{"before":"8dcd9b93bf5c90fd57a00aee0fbf0054b897c579","after":"e7b2170af2805ca6a65e9c542e7901ffb08fcb31","ref":"refs/heads/main","pushedAt":"2024-03-08T08:29:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"XLIU-hub","name":"X.Liu","path":"/XLIU-hub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34545147?s=80&v=4"},"commit":{"message":"fix snakefmt version","shortMessageHtmlLink":"fix snakefmt version"}},{"before":"7246607fe5756158eee3e7133160d2dd1c655d27","after":"8dcd9b93bf5c90fd57a00aee0fbf0054b897c579","ref":"refs/heads/main","pushedAt":"2024-03-05T13:48:42.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"XLIU-hub","name":"X.Liu","path":"/XLIU-hub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34545147?s=80&v=4"},"commit":{"message":"Add bookmarks in variant calling result","shortMessageHtmlLink":"Add bookmarks in variant calling result"}},{"before":"6ff2513f45442304d83797ab75d283708b86aa3e","after":"7246607fe5756158eee3e7133160d2dd1c655d27","ref":"refs/heads/main","pushedAt":"2024-02-26T15:35:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Remove some old code","shortMessageHtmlLink":"Remove some old code"}},{"before":"36662a3799d4d3e2cbb76a84eaf412b891e20111","after":"6ff2513f45442304d83797ab75d283708b86aa3e","ref":"refs/heads/main","pushedAt":"2024-02-26T15:06:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Update FastQC to 0.12.1","shortMessageHtmlLink":"Update FastQC to 0.12.1"}},{"before":"dec5fb57f90078f14e08627acc5038b4a72c675d","after":"36662a3799d4d3e2cbb76a84eaf412b891e20111","ref":"refs/heads/main","pushedAt":"2024-02-26T13:19:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Add helper script to clean up test files","shortMessageHtmlLink":"Add helper script to clean up test files"}},{"before":"16a2c4211ece2f2006137e116777afd1a6e05f67","after":"dec5fb57f90078f14e08627acc5038b4a72c675d","ref":"refs/heads/main","pushedAt":"2024-02-23T09:33:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"XLIU-hub","name":"X.Liu","path":"/XLIU-hub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34545147?s=80&v=4"},"commit":{"message":"fix: lock snakefmt version < 0.10.0","shortMessageHtmlLink":"fix: lock snakefmt version < 0.10.0"}},{"before":"10b5e8378301efa4ac0aba579a26c2f4588a22f0","after":"16a2c4211ece2f2006137e116777afd1a6e05f67","ref":"refs/heads/main","pushedAt":"2024-02-22T13:55:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"XLIU-hub","name":"X.Liu","path":"/XLIU-hub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34545147?s=80&v=4"},"commit":{"message":"sort genes of interest alphabetically","shortMessageHtmlLink":"sort genes of interest alphabetically"}},{"before":"1ae7975eb1d38617a770b718d21669888129ca81","after":"10b5e8378301efa4ac0aba579a26c2f4588a22f0","ref":"refs/heads/main","pushedAt":"2024-01-17T14:09:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"XLIU-hub","name":"X.Liu","path":"/XLIU-hub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34545147?s=80&v=4"},"commit":{"message":"Increase the default number of sorting bins for STAR\n\nThis fixes a memory limit issue, see https://github.com/LUMC/HAMLET/issues/30","shortMessageHtmlLink":"Increase the default number of sorting bins for STAR"}},{"before":"4bac1f97a8b33575d7d5bdb103eda71af1708806","after":"1ae7975eb1d38617a770b718d21669888129ca81","ref":"refs/heads/main","pushedAt":"2023-12-07T13:54:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Bugfix release","shortMessageHtmlLink":"Bugfix release"}},{"before":"2be8920117cb2249bcbe6bdc50b8a4f56adab55d","after":"4bac1f97a8b33575d7d5bdb103eda71af1708806","ref":"refs/heads/main","pushedAt":"2023-12-07T07:56:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Fix tests for database identifiers","shortMessageHtmlLink":"Fix tests for database identifiers"}},{"before":"8fd98745ef80f3f4c3fdd518133983bee38b1d6f","after":"2be8920117cb2249bcbe6bdc50b8a4f56adab55d","ref":"refs/heads/main","pushedAt":"2023-12-06T10:49:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Increase space for HGVS description","shortMessageHtmlLink":"Increase space for HGVS description"}},{"before":"f8004d948fb565449bbe27f623478cc48f4823b5","after":null,"ref":"refs/heads/version-check","pushedAt":"2023-11-30T08:06:41.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0yMlQxMDowMTo1Ni4wMDAwMDBazwAAAAShIOY0","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0yMlQxMDowMTo1Ni4wMDAwMDBazwAAAAShIOY0","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMS0zMFQwODowNjo0MS4wMDAwMDBazwAAAAO7vEqC"}},"title":"Activity ยท LUMC/HAMLET"}