This reference contains all methods currently available in CLIJ, CLIJ2 and CLIJx for projecting images.. Read more about CLIJs release cycle
Please note: CLIJ is deprecated. Make the transition to CLIJ2.
Method is available in CLIJ (deprecated release)
Method is available in CLIJ2 (stable release)
Method is available in CLIJx (experimental release)
Method is available in clEsperanto (experimental)
Categories: Binary, Filter, Graphs, Labels, Math, Matrices, Measurements, Projections, Transformations, Detection
[A], B, C,[D],[E], F, G, H, I, J, K, L,[M], N, O, P, Q,[R],[S], T, U, V, W, X, Y,[Z]
Determines the maximum projection of an image stack along Z.
Determines a maximum projection of an image stack and does a color coding of the determined arg Z (position of the found maximum).
Extended depth of focus projection maximizing intensity in the local sobel image.
Extended depth of focus projection maximizing local pixel intensity variance.
Determines the maximum intensity projection of an image along X.
Determines the maximum intensity projection of an image along X.
Determines the maximum intensity projection of an image along Z.
Determines the maximum intensity projection of an image along Z within a given z range.
Determines the mean average intensity projection of an image along X.
Determines the mean average intensity projection of an image along Y.
Determines the mean average intensity projection of an image along Z.
Determines the mean average intensity projection of an image along Z but only for pixels above a given threshold.
Determines the mean average intensity projection of an image along Z but only for pixels below a given threshold.
Determines the mean average intensity projection of an image along Z within a given z range.
Determines the median intensity projection of an image stack along Z.
Determines the minimum intensity projection of an image along Y.
Determines the minimum intensity projection of an image along Y.
Determines the minimum intensity projection of an image along Z.
Determines the minimum intensity projection of an image along Z within a given z range.
Determines the minimum intensity projection of all pixels in an image above a given threshold along Z within a given z range.
Computes a radial projection of an image stack.
Computes a radial projection of an image stack and reslices it from top.
Determines the standard deviation intensity projection of an image stack along Z.
Determines the sum intensity projection of an image along Z.
Determines the sum intensity projection of an image along Z.
Determines the sum intensity projection of an image along Z.
Determines a Z-position of the maximum intensity along Z and writes it into the resulting image.
Project a defined Z-slice of a 3D stack into a 2D image.
Project multiple Z-slices of a 3D stack into a new 3D stack.
29 methods listed.